A comprehensive search for tools, databases and services was conducted throughout the project,
focusing in particular on those relevant to animals, unicellular animals and plants,
and to those required for the completion of the test cases outlined in Working Package 1 |
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| Protein
identification and characterization |
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| Identification
and characterization with peptide mass fingerprinting data |
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| FindMod |
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| FindPept |
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| Mascot |
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| PepMAPPER |
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| ProFound |
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| Protein Prospector |
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| Identification
and characterization with MS/MS data |
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| QuickMod |
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| Phenyx |
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| Mascot |
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| OMSSA |
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| PepFrag |
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| ProteinProspector |
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| Identification
with isoelectric point, molecular weight and/or amino acid composition |
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| AACompldent |
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| AACompSim |
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| Tagldent |
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| Multident |
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| Other
prediction or characterization tools |
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| ProtParam |
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| Compute pl/Mw |
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| PeptideCutter |
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| PeptideMass |
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| xComb |
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| xQuest |
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| SmileMS |
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| SmileMS
molecule toolkit |
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| Other
proteomics tools Glycotools |
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| GlycanMass |
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| GlycoMod |
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| GlycospectrumScan |
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| Glycoviewer |
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| Other
tools for MS data (vizualization, quantitation, analysis, etc.) |
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| HCD/CID spectra
merger |
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| MALDIPepQuant |
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| Msight |
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| plcarver |
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| Other
tools for 2-DE data (image analysis, data publishing, etc.) |
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| ImageMaster /
Melanie |
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| MAKE2D-DB II |
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| DNA
-> Protein |
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| Translate |
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| Transeq |
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| Graphical Codon Usage
Analyser |
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| BCM search laucher |
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| Reverse
Translate |
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| Reverse
Transcription and Translation Tool |
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| Genewise |
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| Similarity
searches |
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| BLAST at ExPASy |
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| BLAST
at EMBnet-CH/SIB |
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| BLAST at NCBI |
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| BLAST at PBIL |
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| WU-BLAST at
Bork«s group in EMBL |
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| WU-BLAST at EBI |
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| Fasta3 |
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| MPsrch |
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| ProbSearch |
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| SAMBA |
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| SAWTED |
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| Scanps |
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| SEQUEROME |
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| SHOPS |
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| BLAST2FASTA |
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| Pattern
and profile Searches |
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| InterPro Scan |
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| MyHits |
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| ScanProsite |
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| HamapScan |
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| MotifScan |
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| ProDom |
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| Superfamily
Sequence Search |
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| FingerPRINTScan |
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| 3of5 |
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| ELM |
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| PPSEARCH |
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| PROSITE Scan |
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| PATTINPROT |
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| SMART |
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| TEIRESIAS |
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| 9aaTAD |
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| Post-translational
modification prediction |
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| ChloroP |
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| LipoP |
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| MITOPROT |
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| PATS |
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| PlasMit |
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| Predotar |
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| PTS1 |
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| SignalP |
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| DictyOGlyc |
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| NetOGlyc |
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| NetGlycate |
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| NetNGlyc |
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| OGPET |
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| YinOYang |
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| big-PI
Predictor |
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| GPI-SOM |
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| Myristoylator |
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| NMT |
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| CSS-Palm |
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| PrePS |
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| NetAcet |
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| NetPhos |
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| NetPhosK |
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| NetPhosYeast |
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| GPS |
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| Sulfinator |
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| SulfoSite |
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| SUMOplot |
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| SUMOsp |
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| TermiNator |
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| NetPicoRNA |
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| NetCorona |
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| ProP |
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| Topology
Prediction |
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| NetNES |
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| PSORT |
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| SecretomeP |
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| TargetP |
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| TatP |
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| DAS |
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| HMMTOP |
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| PredictProtein |
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| SOSUI |
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| TMHMM |
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| Tmpred |
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| TopPred |
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| Primary
sturcture analysis |
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| ProtParam |
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| Compute pl/Mw |
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| Scansite
pl/Mw |
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| MW, pl, Titration Curve |
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| Scratch
Protein Predictor |
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| HeliQuest |
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| Radar |
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| REP |
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| REPRO |
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| T-REKS |
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| TRUST |
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| XSTREAM |
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| SAPS |
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| Coils |
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| PairCoil |
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| PairCoil2 |
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| Multicoil |
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| 2ZIP |
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| ePESTfind |
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| HLA_Bind |
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| PEPVAC |
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| RANKPEP |
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| SYFPEITHI |
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| ProtScale |
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| Drawhca |
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| Peptide
Builder |
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| Protein
Colourer |
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| Three
to One |
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| Three-/one-letter
amino acid converter |
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| Colorseq |
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| PepDraw |
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| RandSeq |
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| Secondary
structure prediction |
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| AGADIR |
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| APSSP |
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| CFSSP |
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| GOR |
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| HNN |
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| HTMSRAP |
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| Jpred |
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| JUFO |
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| NetSurfP |
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| NetTurnP |
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| nnPredict |
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| Porter |
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| PredictProtein |
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| Prof |
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| PSA |
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| PSIpred |
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| SOPMA |
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| Scratch
Protein Predictor |
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| DLP-SVM |
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| Tertiary
Structure Analysis |
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| iMolTalk |
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| MolTalk |
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| COPS |
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| PoPMuSiC |
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| Seq2Struct |
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| STRAP |
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| TLSMD |
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| TopMatch-web |
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| Tertiary
Structure Prediction |
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| SWISS-MODEL |
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| CPHmodels |
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| ESyPred3D |
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| Geno3d |
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| Phyre |
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| Fugue |
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| Hhpred |
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| LOOPP |
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| SAM-T08 |
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| PSIpred |
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| HMMSTR/Rosetta |
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| Assessing
tertiary structure prediction |
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| Anolea |
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| LiveBench |
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| NQ-Flipper |
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| PROCHECK |
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| ProSA-web |
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| QMEAN |
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| What If |
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| Quanternary
structure |
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| MakeMultimer |
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| EBI
PISA |
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| PQS |
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| ProtBud |
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| Molecular
modeling and visualization tools |
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| Swiss-PdbViewer |
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| SwissDock |
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| SwissParam |
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|
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| Ascalaph
Packages |
|
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|
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| Astex Viewer |
|
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| Jmol |
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| MarvinSpace |
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| MolMol |
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| MovieMaker |
|
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| PyMol |
|
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| Rasmol |
|
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| SRS 3D |
|
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| VMD |
|
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| YASARA |
|
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| Prediction
of disordered regions |
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| |
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| DisEMBL |
|
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| GlobPlot |
|
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| MeDor |
|
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| POODLE |
|
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| Sequence
aligment |
|
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| Binary |
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| |
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| LALIGN |
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| Dotlet |
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| Multiple |
|
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| |
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| Decrease
redundancy |
|
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|
| CLUSTALW |
|
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| KALIGN |
|
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| MAFFT |
|
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| Muscle |
|
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| T-Coffee |
|
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| MSA |
|
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| DIALIGN |
|
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| Match-Box |
|
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| Multalin |
|
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| MUSCA |
|
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| Alignment
Analysis |
|
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| |
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| AMAS |
|
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| Bork's alignment tools |
|
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| CINEMA |
|
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| ESPript |
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| MaxAlign |
|
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| PhyloGibbs |
|
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| SVA |
|
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| PVS |
|
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| WebLogo |
|
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|
|
| plogo |
|
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|
|
| GENIO/logo |
|
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|
|
| SeqLogo |
|
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|
|
| Phylogenetic
Analysis |
|
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| |
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| BIONJ |
|
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| DendroUPGMA |
|
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| PHYLIP |
|
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| PhyML |
|
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|
|
| Phylogeny.fr |
|
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|
|
| The PhylOgenetic Web
Repeater (POWER) |
|
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|
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| BlastO |
|
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|
|
| Evolutionary Trace Server (TraceSuite II) |
|
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|
|
| Phylogenetic programs |
|
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| Biological
Text Analysis |
|
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| |
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| AcroMed |
|
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| BioMinT |
|
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| GPSDB |
|
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|
| Medline
Ranker |
|
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|
|
| The Miner Suite |
|
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|
|
| XplorMed |
|
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|
|
| Statistical
tools |
|
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| |
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|
|
| pROC |
|
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|
|
| Nucleic Acid
Analysis |
|
|
| Calculators/Unitilies |
|
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| |
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| 4PEAKS |
|
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|
|
| BIOCALCULATORS (AGILENT) |
|
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|
|
| BIOMATH CALCULATORS |
|
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|
|
| DNA 2.0 BIOINFORMATICS TOOLBOX |
|
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|
|
| GenoCAD |
|
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|
|
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|
|
| iPapers |
|
|
|
|
|
|
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|
|
| LabAssistant 1.1 |
|
|
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|
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|
|
| MARTINDALEÕS BIOSCIENCE CALCULATORS ON-LINE CENTER |
|
|
|
|
| PAPERS |
|
|
|
|
|
|
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|
|
| READSEQ SEQUENCE CONVERSION (EBI) |
|
|
|
|
|
|
| REVERSE COMPLEMENTING A DNA SEQUENCE |
|
|
|
|
|
|
| THE GENETIC CODES |
|
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|
|
| TRANSEQ |
|
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|
|
| TRANSLATE TOOL |
|
|
|
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|
|
| UNIVERSAL GENETIC CODE |
|
|
|
|
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|
|
| VIRTUAL RIBOSOME |
|
|
|
|
|
|
|
|
| ANNO-J |
|
|
|
|
|
|
|
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|
|
| Exons
and alternative Splicing |
|
|
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|
| |
|
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|
|
|
|
|
|
| AGenDA: ALIGNMENT-BASED GENE DETECTION ALGORITHM |
|
|
|
|
| ALTERNATIVE EXON DATABASE (EBI) |
|
|
|
|
|
|
| ALTERNATIVE SPLICING AND TRANSCRIPT DIVERSITY |
|
|
|
|
|
| ALTEXTRON (EBI) |
|
|
|
|
|
|
|
|
| ALTSPLICE (EBI) |
|
|
|
|
|
|
|
|
| ATDB: ALTERNATIVE TRANSCRIPT DIVERSITY DATABASE (EBI) |
|
|
|
|
| AUGUSTUS |
|
|
|
|
|
|
|
|
| CODON USAGE DATABASE |
|
|
|
|
|
|
|
| CPGPLOT |
|
|
|
|
|
|
|
|
|
| DEDB: DROSOPHILA MELANOGASTER EXON DATABASE |
|
|
|
|
|
| EASYGENE |
|
|
|
|
|
|
|
|
|
| ESEfinder: EXONIC SPLICING ENHANCER FINDER (CSHL) |
|
|
|
|
|
| EuGENEÕHOM |
|
|
|
|
|
|
|
|
| EXON PAINTER |
|
|
|
|
|
|
|
|
| FeatureExtact |
|
|
|
|
|
|
|
|
| FrameD |
|
|
|
|
|
|
|
|
|
| FUGOID: FUNCTIONAL GENOMICS OF ORGANELLAR INTRONS DATABASE |
|
|
|
| GeneFizz |
|
|
|
|
|
|
|
|
|
| GeneMark |
|
|
|
|
|
|
|
|
|
| GENIE: GENE FINDER |
|
|
|
|
|
|
|
|
| GENSCAN (MIT) |
|
|
|
|
|
|
|
|
| GLIMMER: MICROBIAL GENE-FINDING SYSTEM |
|
|
|
|
|
|
| H-DBAS: HUMAN-TRANSCRIPTOME DATABASE OF ALTERNATIVE SPLICING |
|
|
|
| HMMGENE |
|
|
|
|
|
|
|
|
| HS3D: HOMO SAPIENS SPLICE SITES DATASET |
|
|
|
|
|
|
| JCAT: JAVA CODON ADAPTATION TOOL |
|
|
|
|
|
|
| mGene.web |
|
|
|
|
|
|
|
|
| NETGENE2 |
|
|
|
|
|
|
|
|
|
| NetPlantGene |
|
|
|
|
|
|
|
|
| ORF FINDER (NCBI) |
|
|
|
|
|
|
|
|
| ORPHELIA |
|
|
|
|
|
|
|
|
|
| ProSAS: PROTEIN STRUCTURE AND ALTERNATIVE SPLICING DATABASE |
|
|
|
|
| RESCUE-ESE: EXONIC SPLICING ENHANCERS |
|
|
|
|
|
|
| SERpredict |
|
|
|
|
|
|
|
|
| SHORT TANDEM REPEAT DNA DATABASE |
|
|
|
|
|
|
| SLAM: WHOLE GENOME ANNOTATION OF HUMAN AND MOUSE |
|
|
|
|
| SPLICEINFO |
|
|
|
|
|
|
|
|
| SpliceNest |
|
|
|
|
|
|
|
|
|
| SROOGLE: SPLICING REGULATION ONLINE GRAPHICAL ENGINE |
|
|
|
|
| TACT: TRANSCRIPTOME AUTO-ANNOTATION CONDUCTING TOOL |
|
|
|
|
| TACT: TRANSCRIPTOME AUTO-ANNOTATION CONDUCTING TOOL |
|
|
|
|
| THE GENETIC CODES |
|
|
|
|
|
|
|
|
|
| VIRTUAL RIBOSOME |
|
|
|
|
|
|
|
|
|
| WASP: WEBSITE FOR ALTERNATIVE SPLICING PREDICTION |
|
|
|
|
|
|
|
| Expressed
sequence tags |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| dbEST: EXPRESSED SEQUENCE TAGS DATABASE |
|
|
|
|
|
|
| ECGENE: EST CLUSTERING |
|
|
|
|
|
|
|
| EDAS: EST-DERIVED ALTERNATIVE SPLICING DATABASE |
|
|
|
|
|
| MGALIGN: mRNA TO GENOME ALIGNMENTS |
|
|
|
|
|
|
| MIRA 2 EST SEQUENCE ASSEMBLER |
|
|
|
|
|
|
|
| UNIGENE |
|
|
|
|
|
|
|
|
|
| WEBGESTALT: WEB-BASED GENE SET ANALYSIS TOOLKIT |
|
|
|
|
|
|
| Literature
Gateaway |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| BIOMED CENTRAL: OPEN ACCESS |
|
|
|
|
|
|
|
| BioMinT |
|
|
|
|
|
|
|
|
|
| ENTREZ (NCBI) |
|
|
|
|
|
|
|
|
| etBLAST |
|
|
|
|
|
|
|
|
|
| GOOGLE SCHOLAR |
|
|
|
|
|
|
|
|
| GOPUBMED |
|
|
|
|
|
|
|
|
| HUBMED: PUBMED REWIRED |
|
|
|
|
|
|
|
| IHOP: INFORMATION HYPERLINKED OVER PROTEINS |
|
|
|
|
|
| LitInspector (Genomatix) |
|
|
|
|
|
|
|
| LITMINER |
|
|
|
|
|
|
|
|
|
| MedlineRanker |
|
|
|
|
|
|
|
|
| NCBI EMAIL ALERTS |
|
|
|
|
|
|
|
|
| NLM GATEWAY |
|
|
|
|
|
|
|
|
| OLS: ONTOLOGY LOOKUP SERVICE |
|
|
|
|
|
|
|
| PLOS: PUBLIC LIBRARY OF SCIENCE |
|
|
|
|
|
|
|
| PUBCRAWLER |
|
|
|
|
|
|
|
|
| PUBGENE |
|
|
|
|
|
|
|
|
|
| PUBMATRIX |
|
|
|
|
|
|
|
|
| PUBMED |
|
|
|
|
|
|
|
|
|
| PUBMED CENTRAL |
|
|
|
|
|
|
|
|
| SCIRUS |
|
|
|
|
|
|
|
|
|
| SENT: SEMANTIC FEATURES IN TEXT |
|
|
|
|
|
|
|
| SEQANALREF (EXPASY) |
|
|
|
|
|
|
|
|
|
| Mirna
Sequences and Targets |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ASRP: Arabidopsis thaliana SMALL RNA PROJECT |
|
|
|
|
|
| CROSSLINK |
|
|
|
|
|
|
|
|
| DIANA-microT |
|
|
|
|
|
|
|
|
| deepBase |
|
|
|
|
|
|
|
|
|
| GeneSet2miRNA |
|
|
|
|
|
|
|
|
| INSERT DESIGN TOOL (AMBION) |
|
|
|
|
|
|
|
| MICROCOSM |
|
|
|
|
|
|
|
|
| MicroInspector |
|
|
|
|
|
|
|
|
| microRNA TARGETS |
|
|
|
|
|
|
|
|
| miPRED |
|
|
|
|
|
|
|
|
|
| miRacle |
|
|
|
|
|
|
|
|
|
| MiRAlign |
|
|
|
|
|
|
|
|
|
| miRanalyzer |
|
|
|
|
|
|
|
|
| miRBASE REGISTRY (SANGER) |
|
|
|
|
|
|
|
| miRBASE SEQUENCE DATABASE (SANGER) |
|
|
|
|
|
|
| mirDEEP |
|
|
|
|
|
|
|
|
|
| MiRNA TARGET SEARCH |
|
|
|
|
|
|
|
| miRNAMap |
|
|
|
|
|
|
|
|
| miRpredict |
|
|
|
|
|
|
|
|
| MirZ |
|
|
|
|
|
|
|
|
|
| MMIA: microRNA AND mRNA INTEGRATED ANALYSIS |
|
|
|
|
|
| ProMiR II |
|
|
|
|
|
|
|
|
|
| psRNATARGET |
|
|
|
|
|
|
|
|
| RegRNA: REGULATORY RNA MOTIFS AND ELEMENTS FINDER |
|
|
|
|
| RNA22 MICRORNA TARGET DETECTION (IBM) |
|
|
|
|
|
|
| RNAhybrid |
|
|
|
|
|
|
|
|
| smiRNAdb |
|
|
|
|
|
|
|
|
|
| TARGETSCAN |
|
|
|
|
|
|
|
|
| TargetScanS |
|
|
|
|
|
|
|
|
| TransmiR |
|
|
|
|
|
|
|
|
|
| ViTa: VIRUS miRNA TARGET |
|
|
|
|
|
|
|
|
| Molecular
Biology Protocols |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| BENCH GUIDE (QIAGEN) |
|
|
|
|
|
|
|
| BIOTECHNIQUES¨ PROTOCOL GUIDE |
|
|
|
|
|
|
| BIOWWW.NET |
|
|
|
|
|
|
|
|
| COLD SPRING HARBOR PROTOCOLS |
|
|
|
|
|
|
| JOVE: JOURNAL OF VISUALIZED EXPERIMENTS |
|
|
|
|
|
|
| LINNEAª PROTOCOLS |
|
|
|
|
|
|
|
|
| NUCLEIC ACIDS RESEARCH METHODS |
|
|
|
|
|
|
|
| Nucleic
Acids Structure |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| 3D-DART: 3DNA-DRIVEN DNA ANALYSIS AND REBUILDING TOOL |
|
|
|
|
| 3D-FOOTPRINT |
|
|
|
|
|
|
|
|
| 3DNALandscapes |
|
|
|
|
|
|
|
|
| 4SALE: RNA SEQUENCE ALIGNMENT AND EDITING |
|
|
|
|
|
| bend.it¨ SERVER |
|
|
|
|
|
|
|
|
| CENTROIDFOLD |
|
|
|
|
|
|
|
|
| dbRES: DATABASE FOR RNA EDITING SITES |
|
|
|
|
|
|
| DIAL: DIHEDRAL ALIGNMENT SERVER |
|
|
|
|
|
|
| DINAMELT SERVER |
|
|
|
|
|
|
|
|
| DNA mFOLD |
|
|
|
|
|
|
|
|
| DNA TOOLs |
|
|
|
|
|
|
|
|
| FASTR3D: FAST AND ACCURATE SEARCH TOOL FOR RNA 3D STRUCTURES |
|
|
|
| NDB GALLERIES |
|
|
|
|
|
|
|
|
| NDB: NUCLEIC ACID DATABASE |
|
|
|
|
|
|
|
| ProNIT: PROTEIN-NUCLEIC ACID INTERACTIONS |
|
|
|
|
|
| PROTEIN-RNA INTERACTION DATABASE |
|
|
|
|
|
|
| RNA mFOLD |
|
|
|
|
|
|
|
|
| RNA MODIFICATION DATABASE |
|
|
|
|
|
|
|
| RNA NON-CANONICAL PAIR DATABASE |
|
|
|
|
|
|
| RNAmine |
|
|
|
|
|
|
|
|
|
| RNAVIZ |
|
|
|
|
|
|
|
|
|
| SARA |
|
|
|
|
|
|
|
|
|
| SSTRUCTVIEW |
|
|
|
|
|
|
|
|
| TINOCO PLOT |
|
|
|
|
|
|
|
|
| w3DNA |
|
|
|
|
|
|
|
|
|
| WEB 3DNA |
|
|
|
|
|
|
|
|
|
| Primer
Design |
|
|
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| |
|
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|
|
|
|
|
|
|
| ARRAY DESIGNER |
|
|
|
|
|
|
|
|
| ASePCR: ALTERNATIVE SPLICING ELECTRONIC RT-PCR IN MULTIPLE
TISSUES |
|
|
|
| ASSEMBLY PCR OLIGO MAKER |
|
|
|
|
|
|
|
| AUTODIMER |
|
|
|
|
|
|
|
|
| CODEHOP: CONSENSUS DEGENERATE HYBRID OLIGONUCLEOTIDE PRIMERS |
|
|
|
| D-LUXª DESIGNER (INVITROGEN) |
|
|
|
|
|
|
|
| DILUTIONCALCULATOR (IDT) |
|
|
|
|
|
|
|
| DNA METHYLATION ANALYSIS PCR PRIMER DATABASE |
|
|
|
|
|
| e-PCR: ELECTRONIC PCR |
|
|
|
|
|
|
|
| GENE DESIGNER |
|
|
|
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|
|
| GENE2OLIGO |
|
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| GENEFISHER |
|
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|
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|
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|
|
| geNorm |
|
|
|
|
|
|
|
|
|
| iCODEHOP: CONSENSUS DEGENERATE HYBRID OLIGONUCLEOTIDE
PRIMERS |
|
|
|
| IDT SCITOOLS (IDT) |
|
|
|
|
|
|
|
|
| IN-SILICO PCR |
|
|
|
|
|
|
|
|
| iRNAi |
|
|
|
|
|
|
|
|
|
| LNA TOOLS |
|
|
|
|
|
|
|
|
| methBLAST |
|
|
|
|
|
|
|
|
| MethPrimer: METHYLATION PCR |
|
|
|
|
|
|
|
| MULTIPLEX MANAGER |
|
|
|
|
|
|
|
|
| muPLEX: MULTI-OBJECTIVE MULTIPLEX PCR DESIGN |
|
|
|
|
|
| NormFinder |
|
|
|
|
|
|
|
|
| OLIGOANALYZER (IDT) |
|
|
|
|
|
|
|
|
| OLIGODESIGN |
|
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|
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|
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|
|
| OligoPerfectª DESIGNER (INVITROGEN) |
|
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|
|
| PCR SUITE |
|
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|
|
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|
|
| PDA: PRIMER DESIGN ASSISTANT |
|
|
|
|
|
|
|
| PRIMACLADE |
|
|
|
|
|
|
|
|
| PRIMEGENS: PRIMER DESIGN USING GENE SPECIFIC FRAGMENTS |
|
|
|
|
| PRIMER -BLAST (NCBI) |
|
|
|
|
|
|
|
|
| PRIMER BANK |
|
|
|
|
|
|
|
|
| PRIMER DESIGN FOR AUTOMATED SEQUENCING |
|
|
|
|
|
| PRIMER Z |
|
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|
|
| Primer3Plus |
|
|
|
|
|
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|
|
| PRIMERQUEST (IDT) |
|
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|
|
| primers4clades |
|
|
|
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|
|
| PRIMERSTATION |
|
|
|
|
|
|
|
|
| PRIMERX |
|
|
|
|
|
|
|
|
|
| probeBase: rRNA-TARGETED OLIGONUCLEOTIDE PROBES |
|
|
|
|
|
| PROBEWIZ |
|
|
|
|
|
|
|
|
|
| qPimerDepot: QUANTITATIVE REAL-TIME PCR PRIMER DATABASE |
|
|
|
|
| QPPD: QUANTITATIVE PCR PRIMER DATABASE |
|
|
|
|
|
|
| qPrimerDepot: QUANTITATIVE REAL TIME PCR (HUMAN) |
|
|
|
|
|
| qPrimerDepot: QUANTITATIVE REAL TIME PCR (MOUSE) |
|
|
|
|
|
| RESUSPENSION CALCULATOR (IDT) |
|
|
|
|
|
|
|
| RTPrimerDB: REAL TIME PCR PRIMER AND PROBE DATABASE |
|
|
|
|
| SCPrimer |
|
|
|
|
|
|
|
|
|
| SNPbox |
|
|
|
|
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|
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|
|
| SNPDesign |
|
|
|
|
|
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|
|
| TmPrime |
|
|
|
|
|
|
|
|
|
| Uniprime: UNIVERSAL PRIMER DESIGN |
|
|
|
|
|
|
| UniSTS |
|
|
|
|
|
|
|
|
|
| VirOligo |
|
|
|
|
|
|
|
|
|
| WEB PRIMER (SGD) |
|
|
|
|
|
|
|
|
|
| Restriction
site Mapping |
|
|
|
|
|
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| |
|
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|
|
|
|
|
|
|
| ApE PLASMID EDITOR |
|
|
|
|
|
|
|
|
| DOUBLE DIGEST FINDER |
|
|
|
|
|
|
|
| ENZYME FINDER (NEB) |
|
|
|
|
|
|
|
|
| EnzymeX |
|
|
|
|
|
|
|
|
|
| everyVECTOR |
|
|
|
|
|
|
|
|
| GeneCoder |
|
|
|
|
|
|
|
|
| NEB CUTTER |
|
|
|
|
|
|
|
|
| REBASE¨ (NEB) |
|
|
|
|
|
|
|
|
| RESTRICTION ENZYMES AND METHYLASES |
|
|
|
|
|
|
| Vector NTI ADVANCE¨ (Invitrogen) |
|
|
|
|
|
|
|
| WEBCUTTER |
|
|
|
|
|
|
|
|
|
| RNA
Regulation |
|
|
|
|
|
|
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| |
|
|
|
|
|
|
|
|
|
| deepBase |
|
|
|
|
|
|
|
|
|
| fRNADB: FUNCTIONAL RNA DATABASE |
|
|
|
|
|
|
| GENE-SPECIFIC siRNA SELECTOR |
|
|
|
|
|
|
|
| INSERT DESIGN TOOL (AMBION) |
|
|
|
|
|
|
|
| NPInter |
|
|
|
|
|
|
|
|
|
| RegRNA: REGULATORY RNA MOTIFS AND ELEMENTS FINDER |
|
|
|
|
| RibEx: RIBOSWITCH EXPLORER |
|
|
|
|
|
|
|
| RiDDLE |
|
|
|
|
|
|
|
|
|
| RNAdb |
|
|
|
|
|
|
|
|
|
| RNAi CONSORTIUM shRNA LIBRAY |
|
|
|
|
|
|
|
| RNAi DESIGN (INTEGRATED DNA TECHNOLOGIES) |
|
|
|
|
|
| RNAi EXPLORERª |
|
|
|
|
|
|
|
|
| RNAmutants |
|
|
|
|
|
|
|
|
| siDESIGN¨ CENTER (DHARMACON) |
|
|
|
|
|
|
|
| siDIRECT |
|
|
|
|
|
|
|
|
|
| siRNA AT WHITEHEAD |
|
|
|
|
|
|
|
|
| siRNA DESIGN |
|
|
|
|
|
|
|
|
| siRNA TARGET FINDER (AMBION) |
|
|
|
|
|
|
|
| TROD: T7 RNAi OLIGO DESIGNER) |
|
|
|
|
|
|
|
|
| Sequence
Alignment |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| 4SALE: RNA SEQUENCE ALIGNMENT AND EDITING |
|
|
|
|
|
| 3D-FOOTPRINT |
|
|
|
|
|
|
|
|
| 3DNALandscapes |
|
|
|
|
|
|
|
|
| ACT: ARTEMIS COMPARISON TOOL |
|
|
|
|
|
|
|
| bl2BLAST: BLAST 2 SEQUENCES |
|
|
|
|
|
|
|
| BLink:BLAST LINK (NCBI) |
|
|
|
|
|
|
|
| CENSOR |
|
|
|
|
|
|
|
|
|
| CIRCOS |
|
|
|
|
|
|
|
|
|
| CORRELOGO |
|
|
|
|
|
|
|
|
| DIALIGN 2 |
|
|
|
|
|
|
|
|
|
| ECR BROWSER |
|
|
|
|
|
|
|
|
| GALAXY |
|
|
|
|
|
|
|
|
|
| GALAXY SCREENCASTS |
|
|
|
|
|
|
|
|
| GeneCoder |
|
|
|
|
|
|
|
|
| HOMOLOGENE |
|
|
|
|
|
|
|
|
| InterPro |
|
|
|
|
|
|
|
|
|
| MEME/MAST |
|
|
|
|
|
|
|
|
| MODEL MAKER (NCBI) |
|
|
|
|
|
|
|
|
| NNDB: NEAREST NEIGHBOR DATABASE |
|
|
|
|
|
|
| OrthoSelect |
|
|
|
|
|
|
|
|
| PACDB: SEARCH BY GENOME ALIGNMENT |
|
|
|
|
|
|
| PARALIGN |
|
|
|
|
|
|
|
|
|
| PIPMAKER: PERCENT IDENTITY PLOT |
|
|
|
|
|
|
| REPEATMASKER |
|
|
|
|
|
|
|
|
| RevTrans |
|
|
|
|
|
|
|
|
|
| RU: REPBASE UPDATE |
|
|
|
|
|
|
|
|
| SERpredict |
|
|
|
|
|
|
|
|
| SIB BLAST SERVER: SIMPLE IS BEAUTIFUL |
|
|
|
|
|
|
| SPIDEY |
|
|
|
|
|
|
|
|
|
| SPLIGN (NCBI) |
|
|
|
|
|
|
|
|
| WAVIS: ALIGNMENT VISUALIZATION TOOLS |
|
|
|
|
|
|
| WebGMAP |
|
|
|
|
|
|
|
|
| Wise2 |
|
|
|
|
|
|
|
|
|
| zPICTURE |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Sequence
Retrieval |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| CENSOR |
|
|
|
|
|
|
|
|
|
| DDBJ: DNA DATA BANK OF JAPAN |
|
|
|
|
|
|
|
| DNA PATENT DATABASE |
|
|
|
|
|
|
|
| EMBL DOCUMENTATION |
|
|
|
|
|
|
|
| ENTREZ GENE (NCBI) |
|
|
|
|
|
|
|
|
| ENTREZ GLOBAL QUERY |
|
|
|
|
|
|
|
| ENTREZ: ACCESS TO NCBI DATABASES |
|
|
|
|
|
|
| FASTA/SSEARCH/GGSEARCH/GLSEARCH |
|
|
|
|
|
|
| FRAME-PROFILESCAN SERVER |
|
|
|
|
|
|
|
| GENBANK¨ |
|
|
|
|
|
|
|
|
| GENECARDS¨ |
|
|
|
|
|
|
|
|
| GENOMENET |
|
|
|
|
|
|
|
|
| INTERNATIONAL NUCLEOTIDE SEQUENCE DATABASE COLLABORATION |
|
|
|
|
| NCBI SITE MAP |
|
|
|
|
|
|
|
|
| NCBI: NATIONAL CENTER FOR BIOTECHNOLOGY INFORMATION |
|
|
|
|
| PATOME DB: DATABASE OF ISSUED AND PUBLISHED BIOLOGICAL
SEQUENCES |
|
|
|
| SEQUIN |
|
|
|
|
|
|
|
|
|
| SRS@EMBL-EBI |
|
|
|
|
|
|
|
|
| TELOMERASE DATABASE |
|
|
|
|
|
|
|
|
| Transcription
factors and bindning sites |
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| AGRIS: ARABIDOPSIS GENE REGULATORY INFORMATION SERVER |
|
|
|
|
| AthaMap |
|
|
|
|
|
|
|
|
|
| CEAS: CIS-REGULATORY ELEMENT ANNOTATION SYSTEM |
|
|
|
|
|
| CisMols ANALYZER: Cis- REGULATORY MODULES |
|
|
|
|
|
| cisRED: GENOME-WIDE REGULATORY MODULE AND ELEMENT
PREDICTIONS |
|
|
|
| CLUSTER BUSTER |
|
|
|
|
|
|
|
|
| CONREAL: CONSERVED REGULATORY ELEMENTS ANCHORED ALIGNMENT |
|
|
|
| CONSITE |
|
|
|
|
|
|
|
|
|
| DATF: DATABASE OF Arabidopsis TRANSCRIPTION FACTORS |
|
|
|
|
|
| DBD: TRANSCRIPTION FACTOR PREDICTION DATABASE |
|
|
|
|
|
| DiRE: DISTANT REGULATORY ELEMENTS OF CO-REGULATED GENES |
|
|
|
|
| HOMEOBOX PAGE |
|
|
|
|
|
|
|
|
| HOMEODOMAIN RESOURCE |
|
|
|
|
|
|
|
| HOX-PRO |
|
|
|
|
|
|
|
|
|
| HTPSELEX DATABASE |
|
|
|
|
|
|
|
|
| INCLUSive |
|
|
|
|
|
|
|
|
|
| JASPAR |
|
|
|
|
|
|
|
|
|
| jPREdictor |
|
|
|
|
|
|
|
|
|
| MAPPER |
|
|
|
|
|
|
|
|
|
| MATBASE |
|
|
|
|
|
|
|
|
|
| MATINSPECTOR |
|
|
|
|
|
|
|
|
| MoD: MOTIF DISCOVERY |
|
|
|
|
|
|
|
| MOTIFVIZ |
|
|
|
|
|
|
|
|
|
| ORegAnno: OPEN REGULATORY ANNOTATION DATABASE |
|
|
|
|
|
| PAZAR |
|
|
|
|
|
|
|
|
|
| PLACE: PLANT CIS-ACTING REGULATORY DNA ELEMENTS |
|
|
|
|
|
| ProteDNA |
|
|
|
|
|
|
|
|
|
| RSAT: REGULATORY SEQUENCE ANALYSIS TOOLS |
|
|
|
|
|
| rVISTA |
|
|
|
|
|
|
|
|
|
| SeqVISTA |
|
|
|
|
|
|
|
|
|
| TARGET EXPLORER |
|
|
|
|
|
|
|
|
| TESS: TRANSCRIPTION ELEMENT SEARCH SYSTEM |
|
|
|
|
|
| TFBScluster |
|
|
|
|
|
|
|
|
| TFSEARCH |
|
|
|
|
|
|
|
|
|
| TOUCAN 2 |
|
|
|
|
|
|
|
|
|
| TRACTOR DB |
|
|
|
|
|
|
|
|
| TRANSCompel¨ |
|
|
|
|
|
|
|
|
| TRANSFAC¨ |
|
|
|
|
|
|
|
|
| TRANSPATH¨ |
|
|
|
|
|
|
|
|
| TRANSTERM |
|
|
|
|
|
|
|
|
| TRAWLER |
|
|
|
|
|
|
|
|
|
| TRED: TRANSCRIPTIONAL REGULATORY ELEMENT DATABASE |
|
|
|
|
| TrSDB |
|
|
|
|
|
|
|
|
|
| VOMBAT |
|
|
|
|
|
|
|
|
|
| YMF |
|
|
|
|
|
|
|
|
|
| ZINC FINGER TOOLS |
|
|
|
|
|
|
|
|
|
| Transcription
Promoter Sites |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ANNOTATIONS (OF TRANSCRIPTION FACTOR BINDING SITES WITHIN
ORTHOLOGOUS PROMOTERS) |
|
| BKL Transfac¨ |
|
|
|
|
|
|
|
|
| ChromDB |
|
|
|
|
|
|
|
|
|
| CMA: COMPOSITE MODULE ANALYST |
|
|
|
|
|
|
| COREPROMOTER FINDER (CSHL) |
|
|
|
|
|
|
|
| CREB TARGET GENE DATABASE |
|
|
|
|
|
|
|
| CSHLmpd: COLD SPRING HARBOR LABORATORY MAMMALIAN PROMOTER
DATABASE |
|
|
| dbQSNP |
|
|
|
|
|
|
|
|
|
| DBTSS: DATABASE OF TRANSCRIPTION START SITES |
|
|
|
|
|
| EPD: EUKARYOTIC PROMOTER DATABASE |
|
|
|
|
|
|
| GENE2PROMOTER |
|
|
|
|
|
|
|
|
| GenomeTraFac |
|
|
|
|
|
|
|
|
| LSPD: LIVER SPECIFIC GENE PROMOTER DATABASE (CSHL) |
|
|
|
|
|
| NEURAL NETWORK PROMOTER PREDICTION |
|
|
|
|
|
|
| NPRD: NUCLEOSOME POSITIONING REGION DATABASE |
|
|
|
|
|
| PlantPromDB |
|
|
|
|
|
|
|
|
| PLEIADES PROMOTER PROJECT |
|
|
|
|
|
|
|
| PromEC |
|
|
|
|
|
|
|
|
|
| PROMOSER |
|
|
|
|
|
|
|
|
| PROMOTER SCAN |
|
|
|
|
|
|
|
|
| PromoterSweep |
|
|
|
|
|
|
|
|
| PSCAN |
|
|
|
|
|
|
|
|
|
| S/MARt DBª |
|
|
|
|
|
|
|
|
|
| Vector
Maps |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| CIRDNA |
|
|
|
|
|
|
|
|
|
| GENE INSPECTOR |
|
|
|
|
|
|
|
|
| IRESite |
|
|
|
|
|
|
|
|
|
| LINDNA |
|
|
|
|
|
|
|
|
|
| PlasMapper |
|
|
|
|
|
|
|
|
| PlasmID: PLASMID INFORMATION DATABASE |
|
|
|
|
|
|
| VECSCREEN (UNIVEC DATABASE) |
|
|
|
|
|
|
|
| VECTOR db |
|
|
|
|
|
|
|
|
| VECTOR MAPS (AGILENT) |
|
|
|
|
|
|
|
| VECTORDESIGNERª (INVITROGEN) |
|
|
|
|
|
|
|
| VECTORS (PROMEGA) |
|
|
|
|
|
|
|
|
| VECTORS (RZPD) |
|
|
|
|
|
|
|
|
|
| Genomic
Resources |
|
|
| Bioinformatics |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Arena3D |
|
|
|
|
|
|
|
|
|
| ARGO GENOME BROWSER |
|
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| AutoClass@IJM |
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| BiNA: BIOLOGICAL NETWORK ANALYZER |
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| BioCocoa |
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| BIOCONDUCTOR |
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| BioGRID: BIOLOGICAL GENERAL REPOSITORY FOR INTERACTION
DATASETS |
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| BioLayout EXPRESS 3D |
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| BIOLOGICAL NETWORKS INTEGRATED RESEARCH ENVIRONMENT |
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| BiOMART |
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| BIOMOBY |
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| BIOMODELS DATABASE (EMBL-EBI) |
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| BIOMODELS.NET |
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| BIOPATHWAYS CONSORTIUM |
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| BioPAX: BIOLOGICAL PATHWAYS EXCHANGE |
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| BIOPERL PROJECT |
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| BIOPORTAL |
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| BIOPYTHON PROJECT |
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| BioTapestry |
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| BioUML- OPEN SOURCE JAVA FRAMEWORK FOR SYSTEMS BIOLOGY |
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| BMC BIOINFORMATICS |
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| CALEYDO |
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| CELLCIRCUITS |
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| CELLDESIGNERª |
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| CellML MODEL REPOSITORY |
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| CellML TOOLs |
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| COLLEXIS¨ |
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| CVTree: COMPOSITION VECTOR PHYLOGENETIC ANALYSIS |
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| CYTOSCAPE |
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| DAS: DISTRIBUTED ANNOTATION SYSTEM |
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| DAVID: DATABASE FOR ANNOTATION, VISUALIZATION AND INTEGRATED
DISCOVERY |
|
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| E-CELL |
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| EBI: EUROPEAN BIOINFORMATICS INSTITUTE |
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| EDINBURGH PATHWAY EDITOR |
|
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| ENCODE: ENCYCLOPEDIA OF DNA ELEMENTS (NHGRI) |
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| ENTREZ GENE (NCBI) |
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| FGED: FUNCTIONAL GENOMICS DATA SOCIETY |
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| GENDOO: GENE DISEASE FEATURES ONTOLOGY-BASED OVERVIEW |
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| GeneAssistª (APPLIED BIOSYSTEMS) |
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| GENESPRINGª |
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| GENeVis |
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| GenMAPP |
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| GEO: GENE EXPRESSION OMNIBUS (NCBI) |
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| GO: GENE ONTOLOGY CONSORTIUM |
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| ImageWeb |
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| INGENUITY PATHWAYS ANALYSIS |
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| INOH: INTEGRATING NETWORK OBJECTS WITH HIERARCHIES |
|
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| ISB: INSTITUTE FOR SYSTEMS BIOLOGY |
|
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| J. CRAIG VENTER INSTITUTE SOFTWARE TOOLS |
|
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| JWS ONLINE CELLULAR SYSTEMS MODELING |
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| MGI GLOSSARY |
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| MICROARRAY DATA ANALYSIS BIBLIOGRAPHY |
|
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| MICROARRAY PROJECT (NHGRI) |
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| MICROBIAL METAGENOMICS BIOINFORMATICS STRATEGY |
|
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| MiGenAS: INTEGRATED GENE ANALYSIS SYSTEM |
|
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|
| MIRIAM: MINIMAL INFORMATION REQUESTED IN THE ANNOTATION OF
BIOCHEMICAL MODELS |
|
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| myGRID |
|
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| NAViGaTOR: NETWORK ANALYSIS VISUALIZATION AND GRAPHING
TORONTO |
|
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| Nbrowse |
|
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| ODE: ONTOLOGICAL DISCOVERY ENVIRONMENT |
|
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| OLS: ONTOLOGY LOOKUP SERVICE |
|
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| OMNIGENE |
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| ONDEX |
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| OPENHELIX BIOINFORMATICS TRAINING |
|
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| OSPREY |
|
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| OWL: ONTOLOGY WEB LANGUAGE |
|
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| PATTERN DISCOVERY GROUP (IBM) |
|
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| PHOG: PHYLOFACTS ORTHOLOGY GROUP) |
|
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| PosMed: POSITIONAL MEDLINE |
|
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| PyNN: PYTHON NEURAL NETWORK MODELS |
|
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| SAGEmap (NCBI) |
|
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| SBGN: SYSTEMS BIOLOGY GRAPHIC NOTATION |
|
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| SBML SOFTWARE MATRIX |
|
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|
| SBML: SYSTEMS BIOLOGY MARKUP LANGUAGE |
|
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|
|
| SENT: SEMANTIC FEATURES IN TEXT |
|
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|
| SEQUENCE ANALYSIS WITH DISTRIBUTED RESOURCES (AN ONLINE
COURSE) |
|
|
|
| SYSTEMS BIOLOGY WORKBENCH |
|
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| TAVERNA |
|
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| Tulip |
|
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| VANTED: VISUALIZATION AND ANALYSIS OF NETWORKS CONTAINING
EXPERIMENTAL DATA |
|
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| visANT |
|
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| WEBCELL |
|
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| WhichGenes |
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| yED |
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| Clone
Collections |
|
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| |
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| CLONERANGERª |
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| CLONES (ATCC) |
|
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|
| DNASU PLASMID REPOSITORY |
|
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|
|
| GENESERVICE |
|
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|
|
| I.M.A.G.E. CONSORTIUM: iNTEGRATED MOLECULAR ANALYSIS OF
GENOMES AND THEIR EXPRESSION |
|
| imaGenes |
|
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|
| INVITROGEN CLONES |
|
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|
| LINNEAª GENES |
|
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|
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|
|
| MGC: MAMMALIAN GENE COLLECTION |
|
|
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|
|
| OPEN BIOSYSTEMS |
|
|
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|
| ORFEXPRESSª |
|
|
|
|
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|
|
| ULTIMATEª ORF BROWSER |
|
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|
|
| Coparative
Genomics |
|
|
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| |
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|
| 3D-GENOMICS |
|
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|
|
| ARCHAEAL GENOME BROWSER (UCSC) |
|
|
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|
|
| BBID: BIOLOGICAL BIOCHEMICAL IMAGE DATABASE |
|
|
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|
| CHAOS+DIALIGN |
|
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| CIRCOS |
|
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|
| CMR: COMPREHENSIVE MICROBIAL RESOURCE (TIGR) |
|
|
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|
|
| CORG: COMPARATIVE REGULATORY GENOMICS |
|
|
|
|
|
| CVTree: COMPOSITION VECTOR TREE |
|
|
|
|
|
|
| DATABASE OF ORTHOLOGOUS GROUPS |
|
|
|
|
|
|
| DEG:DATABASE OF ESSENTIAL GENES |
|
|
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|
|
| e-PROTEIN |
|
|
|
|
|
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|
|
| ECR BROWSER: EVOLUTIONARY CONSERVED REGIONS |
|
|
|
|
|
| eggNOG: EVOLUTIONARY GENEALOGY OF GENES--NON-SUPERVISED
ORTHOLOGOUS GROUPS |
|
|
| EGO: EUKARYOTIC GENE ORTHOLOGUES |
|
|
|
|
|
|
| EPGD: EUKARYOTIC PARALOG GROUP DATABASE |
|
|
|
|
|
| ERGOª (INTEGRATED GENOMICS) |
|
|
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|
|
|
|
| eSHADOW: EVOLUTIONARY PHYLOGENETIC SHADOWING OF CLOSELY
RELATED SPECIES (LLNL) |
|
|
| FOOTPRINTER MANUAL |
|
|
|
|
|
|
|
| FUSIONDB |
|
|
|
|
|
|
|
|
|
| GATA: GRAPHIC ALIGNMENT TOOL FOR COMPARATIVE SEQUENCE
ANALYSIS |
|
|
|
| GENE INDEX PROJECT |
|
|
|
|
|
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|
|
| GeneNest |
|
|
|
|
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|
|
| GENETIC ANALYSIS SOFTWARE |
|
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|
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|
|
| GENOMES (EBI) |
|
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|
|
| GENOMES FASTA |
|
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|
|
| GESBAP: GENE SET BASED ANALYSIS OF POLYMORPHISMS |
|
|
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|
|
| GIB: GENOME INFORMATION BROKER (DDBJ) |
|
|
|
|
|
|
| HGT-DB: HORIZONTAL GENE TRANSFER DATABASE |
|
|
|
|
|
| HOMOLOGENE |
|
|
|
|
|
|
|
|
| ICCARE: INTERSPECIFIC COMPARATIVE CLUSTERING AND ANNOTATION
FOR EST |
|
|
|
| ICDS: INTERRUPTED CODING SEQUENCE DATABASE |
|
|
|
|
|
| IMG: INTEGRATED MICROBIAL GENOMES |
|
|
|
|
|
|
| InParanoid: EUKARYOTIC ORTHOLOG GROUPS |
|
|
|
|
|
|
| INTEGR8 (EMBL-EBI) |
|
|
|
|
|
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|
|
| INTEROLOG/ REGULOG DATABASE |
|
|
|
|
|
|
|
| KALIGN |
|
|
|
|
|
|
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|
|
| MaM: MULTIPLE ALIGNMENT MANIPULATOR |
|
|
|
|
|
|
| MANET: MOLECULAR ANCESTRY NETWORK |
|
|
|
|
|
|
| MBGD: MICROBIAL GENOME DATABASE |
|
|
|
|
|
|
| MEDEA (COMPARATIVE GENOMIC VISUALIZATION WITH ADOBE FLASH) |
|
|
|
|
| MEGA: MOLECULAR EVOLUTIONARY GENETICS ANALYSIS |
|
|
|
|
|
| MG-RAST: META GENOME RAPID ANNOTATION USING SUBSYSTEM
TECHNOLOGY |
|
|
|
| MICROBIAL GENOME DATABASE FOR COMPARATIVE ANALYSIS |
|
|
|
|
| MICROFOOTPRINTER |
|
|
|
|
|
|
|
|
| MizBee: A MULTISCALE SYNTENY BROWSER |
|
|
|
|
|
|
| MrBayes |
|
|
|
|
|
|
|
|
|
| MULAN (LLNL) |
|
|
|
|
|
|
|
|
| NCBI TAXONOMY |
|
|
|
|
|
|
|
|
| ODB: OPERON DATABASE |
|
|
|
|
|
|
|
| OMICBROWSE (RIKEN) |
|
|
|
|
|
|
|
|
| OPTIC: ORTHOLOGOUS AND PARALOGOUS TRANSCRIPTS IN CLADES |
|
|
|
|
| ORTHOMCL DB |
|
|
|
|
|
|
|
|
| PANDIT: PROTEIN AND ASSOCIATED NUCLEOTIDE DOMAINS WITH
INFERRED TREES |
|
|
|
| PANTHER: PROTEIN ANALYSIS THROUGH EVOLUTIONARY RELATIONSHIPS |
|
|
|
| PAUP: PHYLOGENETIC ANALYSIS USING PARSIMONY |
|
|
|
|
|
| PEDANT DATABASE |
|
|
|
|
|
|
|
|
| PHENOMICDB |
|
|
|
|
|
|
|
|
| PHOG: PHYLOFACTS ORTHOLOGY GROUP |
|
|
|
|
|
|
| PHYDBAC: PHYLOGENOMIC DISPLAY OF BACTERIAL GENES |
|
|
|
|
|
| PHYLIP |
|
|
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|
| PHYLOMEDB |
|
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|
|
| PHYLOPARS |
|
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|
| PHYML |
|
|
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|
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|
|
| POPSET (NCBI) |
|
|
|
|
|
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|
|
| POWER: PHYLOGENETIC WEB REPEATER |
|
|
|
|
|
|
| PROLINKS |
|
|
|
|
|
|
|
|
|
| SPLITSTREE: ANALYZING AND VISUALIZING EVOLUTIONARY DATA |
|
|
|
|
| SPRING: SORTING PERMUTATION BY REVERSALS AND BLOCK
INTERCHANGES |
|
|
|
| SUPERFAMILY |
|
|
|
|
|
|
|
|
| SVC: STRUCTURED VISUALIZATION OF EVOLUTIONARY CONSERVED
SEQUENCES |
|
|
|
| SYBIL (TIGR) |
|
|
|
|
|
|
|
|
| SynView |
|
|
|
|
|
|
|
|
|
| TAED: THE ADAPTIVE EVOLUTION DATABASE |
|
|
|
|
|
|
| TAXONOMY BROWSER (NCBI) |
|
|
|
|
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|
|
| THE SEED |
|
|
|
|
|
|
|
|
|
| TREE OF LIFE |
|
|
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|
| TREEBASE |
|
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|
|
| TREEFAM |
|
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|
| VISTA SERVERS |
|
|
|
|
|
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|
|
| xBASE |
|
|
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|
|
| Drosophila
Genome |
|
|
|
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| |
|
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|
|
|
|
|
|
| BDGP GOLD cDNA COLLECTION |
|
|
|
|
|
|
|
| BLAST Drosophila SEQUENCES |
|
|
|
|
|
|
|
| Drosophila GENOME RESOURCES (NCBI) |
|
|
|
|
|
|
| Drosophila MICROARRAY CENTRE |
|
|
|
|
|
|
|
| Drosophila POLYMORPHISM DATABASE |
|
|
|
|
|
|
| Drosophila RNAi SCREENING CENTER |
|
|
|
|
|
|
| FLIGHT |
|
|
|
|
|
|
|
|
|
| FLYBASE: A DATABASE OF Drosophila GENES AND GENOMES |
|
|
|
|
| FLYBRAIN |
|
|
|
|
|
|
|
|
|
| FLYMOVE |
|
|
|
|
|
|
|
|
|
| FlyTF: FLY TRANSCRIPTION FACTORS |
|
|
|
|
|
|
| FLYTRAP |
|
|
|
|
|
|
|
|
|
| FLYVIEW |
|
|
|
|
|
|
|
|
|
| GenomeRNAi |
|
|
|
|
|
|
|
|
| REDfly: REGULATORY ELEMENT DATABASE FOR DROSOPHILA |
|
|
|
|
| THE INTERACTIVE FLY |
|
|
|
|
|
|
|
|
|
| Fish
Genomes |
|
|
|
|
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| |
|
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|
|
|
|
|
|
| FISHSCOPE |
|
|
|
|
|
|
|
|
| MEDAKAFISH HOMEPAGE |
|
|
|
|
|
|
|
| ZEBRAFISH GENOME RESOURCES (NCBI) |
|
|
|
|
|
|
| ZFIN: ZEBRAFISH INFORMATION RESOURCE NETWORK |
|
|
|
|
|
|
| Fundamental
Genomic Resources |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ABySS-EXPLORER |
|
|
|
|
|
|
|
|
| ANNO-J |
|
|
|
|
|
|
|
|
|
| BAR CODE OF LIFE DATA SYSTEMS |
|
|
|
|
|
|
|
| BIOCONDUCTOR |
|
|
|
|
|
|
|
|
| BIOSAPIENS NETWORK |
|
|
|
|
|
|
|
|
| CBOL: CONSORTIUM FOR THE BARCODE OF LIFE |
|
|
|
|
|
| CLC GENOMICS MACHINE |
|
|
|
|
|
|
|
| DATABASE OF GENOME SIZES |
|
|
|
|
|
|
|
| DNASTAR¨ |
|
|
|
|
|
|
|
|
|
| e-ENSEMBL (EBI) |
|
|
|
|
|
|
|
|
| EBI TOOLBOX |
|
|
|
|
|
|
|
|
| ECR BROWSER: EVOLUTIONARY CONSERVED REGIONS |
|
|
|
|
|
| ENTREZ GENE |
|
|
|
|
|
|
|
|
| ENTREZ GENOME |
|
|
|
|
|
|
|
|
| GENETESTS |
|
|
|
|
|
|
|
|
| GENOME CHANNEL |
|
|
|
|
|
|
|
|
| GENOME GLOSSARY |
|
|
|
|
|
|
|
|
| GENOME REVIEWS (EBI) |
|
|
|
|
|
|
|
| GENOME WORKBENCH (NCBI) |
|
|
|
|
|
|
|
| GENOMES AT THE EBI |
|
|
|
|
|
|
|
|
| GenoViz |
|
|
|
|
|
|
|
|
|
| GOLDª Genomes Online Database |
|
|
|
|
|
|
|
| HAWKEYE |
|
|
|
|
|
|
|
|
|
| IGV: INTEGRATIVE GENOMICS VIEWER |
|
|
|
|
|
|
| INSIGNIA |
|
|
|
|
|
|
|
|
|
| NCBI DCODE.ORG COMPARATIVE GENOMICS |
|
|
|
|
|
|
| NCBI SITE MAP |
|
|
|
|
|
|
|
|
| SAMtools |
|
|
|
|
|
|
|
|
|
|
| Fungal
Genomes |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| BCCM: BELGIAN CO-ORDINATED COLLECTIONS OF MICRO-ORGANISMS |
|
|
|
|
| CADRE: CENTRAL Aspergillus DATA REPOSITORY |
|
|
|
|
|
| CANDIDADB |
|
|
|
|
|
|
|
|
| CGD: Candida GENOME DATABASE |
|
|
|
|
|
|
|
| ChromatinDB |
|
|
|
|
|
|
|
|
| DRYGIN:DATA REPOSITORY OF YEAST GENETIC INTERACTIONS |
|
|
|
|
| FUGOID: FUNCTIONAL GENOMICS OF ORGANELLAR INTRONS DATABASE |
|
|
|
| FUNGAL GENETICS STOCK CENTER |
|
|
|
|
|
|
|
| FUNGAL GENOMES BLAST |
|
|
|
|
|
|
|
| GENOLEVURES |
|
|
|
|
|
|
|
|
| MYCORWEB |
|
|
|
|
|
|
|
|
| Neurospora HOME PAGE |
|
|
|
|
|
|
|
| OGD: OOMYCETE GENOMICS DATABASE (NCGR) |
|
|
|
|
|
| ORIDB: REPLICATION ORIGINS DATABASE |
|
|
|
|
|
|
| PHI-BASE: PATHOGEN HOST INTERACTIONS |
|
|
|
|
|
|
| PHYTOPATHIC FUNGI DATABASE |
|
|
|
|
|
|
|
| PROPHECY: PROFILING PHENOTYPIC CHARACTERISTICS IN YEAST |
|
|
|
|
| Saccharomyces cerevisiae GENOME SNAPSHOT (SGD) |
|
|
|
|
|
| SCPD: PROMOTER DATABASE OF Saccharomyces cerevisiae (CSHL) |
|
|
|
|
| SGD: Saccharomyces GENOME DATABASE |
|
|
|
|
|
|
| snoRNAs FROM Saccharomyces |
|
|
|
|
|
|
|
| YEAST GENE ORDER BROWSER |
|
|
|
|
|
|
|
| YEAST INTRON DATABASE |
|
|
|
|
|
|
|
| YEAST RESOURCE CENTER |
|
|
|
|
|
|
|
| YEASTRACT: YEAST SEARCH FOR TRANSCRIPTIONAL REGULATORS AND
CONSENSUS TRACKING |
|
|
|
| Gene
Expression Databases |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| A-to-I RNA EDITING WEBSITE |
|
|
|
|
|
|
|
| ARRAYEXPRESS (EBI) |
|
|
|
|
|
|
|
|
| BASE: BioArray SOFTWARE ENVIRONMENT |
|
|
|
|
|
|
| BioGPS (SYMATLAS) |
|
|
|
|
|
|
|
|
| cDNA2Genome |
|
|
|
|
|
|
|
|
| ChimerDB |
|
|
|
|
|
|
|
|
|
| ChromatinDB |
|
|
|
|
|
|
|
|
| cMAP: CONNECTIVITY MAP |
|
|
|
|
|
|
|
| CORG: COMPARATIVE REGULATORY GENOMICS |
|
|
|
|
|
| COXPRESDB: CO-EXPRESSED GENE DATABASE |
|
|
|
|
|
|
| dbEST: EXPRESSED SEQUENCE TAGS DATABASE (NCBI) |
|
|
|
|
|
| dbGAP: DATABASE OF GENOTYPE AND PHENOTYPE (NCBI) |
|
|
|
|
|
| EUREXPRESS |
|
|
|
|
|
|
|
|
| EXPANDER: EXpression Analyzer and DisplayER) |
|
|
|
|
|
| fRNAdb |
|
|
|
|
|
|
|
|
|
| G-QUADRUPLEX RESOURCE SITE |
|
|
|
|
|
|
|
| GEMMA |
|
|
|
|
|
|
|
|
|
| GENECODIS: GENE ANNOTATIONS CO-OCURRENCE DISCOVERY |
|
|
|
|
| genepaint.org |
|
|
|
|
|
|
|
|
| GenMAPP |
|
|
|
|
|
|
|
|
|
| GEO: GENE EXPRESSION OMNIBUS |
|
|
|
|
|
|
|
| GREGLIST: POTENTIAL G-QUADRUPLEX -REGULATED GENES LIST |
|
|
|
|
| GSEA: GENE SET ENRICHMENT ANALYSIS |
|
|
|
|
|
|
| GXD: GENE EXPRESSION DATABASE |
|
|
|
|
|
|
|
| HHMD: HUMAN HISTONE MODIFICATION DATABASE |
|
|
|
|
|
| HuGE: HUMAN GENE EXPRESSION INDEX |
|
|
|
|
|
|
| HUGE: HUMAN UNIDENTIFIED GENE-ENCODED LARGE PROTEINS |
|
|
|
|
| IMPRINTED GENE CATALOG |
|
|
|
|
|
|
|
| IRESite |
|
|
|
|
|
|
|
|
|
| LIFEdb: DATABASE FOR LOCALIZATION, INTERACTION, FUNCTIONAL
ASSAYS AND EXPRESSION OF PROTEINS |
|
| MGI: MOUSE GENOME INFORMATICS (GENE EXPRESSION LITERATURE
QUERY) |
|
|
|
| MODEL MAKER (NCBI) |
|
|
|
|
|
|
|
|
| MSigDB: MOLECULAR SIGNATURES DATABASE |
|
|
|
|
|
|
| NATsDB: NATURAL ANTISENSE TRANSCRIPTS DATABASE |
|
|
|
|
|
| NCBI DCODE.ORG COMPARATIVE GENOMICS DEVELOPMENTS |
|
|
|
|
| ODE: ONTOLOGICAL DISCOVERY ENVIRONMENT |
|
|
|
|
|
| PhenoGen INFORMATICS |
|
|
|
|
|
|
|
| PolyA DB |
|
|
|
|
|
|
|
|
|
| POMELLO II |
|
|
|
|
|
|
|
|
| PROBEBASE |
|
|
|
|
|
|
|
|
| PRODORIC: PROKARYOTIC DATABASE OF GENE REGULATION |
|
|
|
|
| PSCAN |
|
|
|
|
|
|
|
|
|
| QuadBase: QUADRUPLEX DATABASES |
|
|
|
|
|
|
| RAD: RNA ABUNDANCE DATABASE |
|
|
|
|
|
|
|
| READ: RIKEN EXPRESSION ARRAY DATABASE |
|
|
|
|
|
|
| RECODE: A DATABASE OF TRANSLATIONAL RECODING EVENTS |
|
|
|
|
| REDI DB: RNA EDITING DATABASE |
|
|
|
|
|
|
|
| RELNET: RELEVANCE NETWORKS |
|
|
|
|
|
|
|
| RNAdb: NONCODING RNAs |
|
|
|
|
|
|
|
| SIDD: STRESS INDUCED DNA DUPLEX DESTABILIZATION |
|
|
|
|
|
| SMD: STANFORD MICROARRY DATABASE |
|
|
|
|
|
|
| SPLIGN (NCBI) |
|
|
|
|
|
|
|
|
| SwissRegulon |
|
|
|
|
|
|
|
|
| ToppGene SUITE |
|
|
|
|
|
|
|
|
| UNIGENE |
|
|
|
|
|
|
|
|
|
| UTRdb |
|
|
|
|
|
|
|
|
|
| VisHiC: VISUALIZATION OF HIERARCHICAL CLUSTERING |
|
|
|
|
|
| WebGMAP |
|
|
|
|
|
|
|
|
|
| Gene
Symbols and Annotation |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ARGH: BIOMEDICAL ACRONYM RESOLVER |
|
|
|
|
|
|
| BABELOMICS |
|
|
|
|
|
|
|
|
| BARCODE OF LIFE |
|
|
|
|
|
|
|
|
| BASys: BACTERIAL ANNOTATION SYSTEM |
|
|
|
|
|
|
| BioGPS |
|
|
|
|
|
|
|
|
|
| BOLD: BAR CODE OF LIFE DATA SYSTEMS |
|
|
|
|
|
|
| cDNA2Genome |
|
|
|
|
|
|
|
|
| COFECO: COMPOSITE FUNCTION ANNOTATION ENRICHED BY PROTEIN
COMPLEX DATA |
|
|
| DAVID: DATABASE FOR ANNOTATION, VISUALIZATION AND INTEGRATED
DISCOVERY |
|
|
| e!ENSEMBL |
|
|
|
|
|
|
|
|
| ECfunction: FUNCTIONAL ANNOTATION VIEWER |
|
|
|
|
|
| ENTREZ GENE (NCBI) |
|
|
|
|
|
|
|
|
| GenDB |
|
|
|
|
|
|
|
|
|
| GENECODIS: GENE ANNOTATIONS CO-OCURRENCE DISCOVERY |
|
|
|
|
| GO PaD: GENE ONTOLOGY PARTITION DATABASE |
|
|
|
|
|
| GO: GENE ONTOLOGY |
|
|
|
|
|
|
|
|
| GOA: GENE ONTOLOGY ANNOTATION (EMBL-EBI) |
|
|
|
|
|
| GOblet |
|
|
|
|
|
|
|
|
|
| GoGene |
|
|
|
|
|
|
|
|
|
| GOPET |
|
|
|
|
|
|
|
|
|
| GPSDB: GENE AND PROTEIN SYNONYM DATABASE |
|
|
|
|
|
| GUIDELINES FOR HUMAN GENE NOMENCLATURE |
|
|
|
|
|
| HARVARD GENE FUNCTIONAL ANNOTATION PREDICTION BROWSER |
|
|
|
|
| HGNC: HUGO GENE NOMENCLATURE COMMITTEE |
|
|
|
|
|
| HGNC: HUMAN GENE NOMENCLATURE SEARCH |
|
|
|
|
|
| IPNI: INTERNATIONAL PLANT NAMES INDEX |
|
|
|
|
|
|
| IUBMB NOMENCLATURE |
|
|
|
|
|
|
|
| IUPAC NOMENCLATURE |
|
|
|
|
|
|
|
| KLAM: KIM LAB ANNOTATION MAPPER |
|
|
|
|
|
|
| MICHECK:MICROBIAL GENOME CHECKER |
|
|
|
|
|
|
| MOLECULE PAGES (AfCS) |
|
|
|
|
|
|
|
| MOUSE NOMENCLATURE |
|
|
|
|
|
|
|
| PICR: PROTEIN IDENTIFIER CROSS-REFERENCE SERVICE |
|
|
|
|
|
| PLANT ONTOLOGY DATABASE |
|
|
|
|
|
|
|
| PROTEIN NAMING UTILITY |
|
|
|
|
|
|
|
| REFSEQ (NCBI) |
|
|
|
|
|
|
|
|
| TOPPGENE SUITE |
|
|
|
|
|
|
|
|
| TROPICOS |
|
|
|
|
|
|
|
|
|
| UMLSKS: UMLS KNOWLEDGE SOURCE SERVER |
|
|
|
|
|
|
| VLAD: VisuaL Annotation Display |
|
|
|
|
|
|
|
| WEGO: WEB GENE ONTOLOGY |
|
|
|
|
|
|
|
|
| Genetic/Genomic
databases |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ACLAME: A CLASSIFICATION OF GENETIC MOBILE ELEMENTS |
|
|
|
|
| ANAGE: ANIMAL AGEING DATABASE |
|
|
|
|
|
|
| BUTTERFLY BASE: LEPIDOPTERA GENOMICS |
|
|
|
|
|
|
| CGAP: CANCER GENOME ANATOMY PROJECT |
|
|
|
|
|
|
| CPDL: CONSERVED PROPERTY DIFFERENCE LOCATOR |
|
|
|
|
|
| EMBOSS ISOCHORE |
|
|
|
|
|
|
|
|
| EUGENES |
|
|
|
|
|
|
|
|
|
| GAN: GENE AGING NEXUS |
|
|
|
|
|
|
|
| GC-PROFILE |
|
|
|
|
|
|
|
|
| GENESNPs |
|
|
|
|
|
|
|
|
|
| GENETIC ANALYSIS SOFTWARE |
|
|
|
|
|
|
|
| GENOLIST |
|
|
|
|
|
|
|
|
|
| GENOME SURVEY SEQUENCES |
|
|
|
|
|
|
|
| GENOMES (EBI) |
|
|
|
|
|
|
|
|
| HAPMAP PROJECT |
|
|
|
|
|
|
|
|
| HEDGEHOG SIGNALING PATHWAY DATABASE |
|
|
|
|
|
|
| HTG: HIGH-THROUGHPUT GENOMIC SEQUENCES |
|
|
|
|
|
| KARYOTYPE DB |
|
|
|
|
|
|
|
|
| KINASE.COM |
|
|
|
|
|
|
|
|
| OMIA: ONLINE MENDELIAN INHERITANCE IN ANIMALS |
|
|
|
|
|
| OMIM: ONLINE MENDELIAN INHERITANCE IN MAN |
|
|
|
|
|
| RNASe P DATABASE |
|
|
|
|
|
|
|
|
| SKY/M-FISH and CGH DATABASE: SPECTRAL KARYOTYPING/MULTIPLE
FLUORESCENCE IN SITU and COMPARATIVE GENOMIC
HYBRIDIZATION |
|
| StellaBase |
|
|
|
|
|
|
|
|
|
| TRANSPORTDB |
|
|
|
|
|
|
|
|
|
| Microbial
Genomes |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| AMIGENE: ANNOTATION OF MICROBIAL GENES |
|
|
|
|
|
|
| BAGEL |
|
|
|
|
|
|
|
|
|
| BCCM: BELGIAN CO-ORDINATED COLLECTIONS OF MICRO-ORGANISMS |
|
|
|
|
| BioBIKE: BIOLOGICAL INTEGRATED KNOWLEDGE ENVIRONMENT |
|
|
|
|
| CABRI HYPERCATALOG |
|
|
|
|
|
|
|
|
| CAMERA: COMMUNITY CYBERINFRASTRUCTURE FOR ADVANCED MARINE
MICROBIAL ECOLOGY RESEARCH AND ANALYSIS |
|
| CGSC DB WEB SERVER |
|
|
|
|
|
|
|
|
| CMR: COMPREHENSIVE MICROBIAL RESOURCE (TIGR) |
|
|
|
|
|
| COMPLETE MICROBIAL GENOMES (NCBI ENTREZ GENOME PROJECT) |
|
|
|
|
| CYANOBASE |
|
|
|
|
|
|
|
|
| DNA STRUCTURAL ATLAS OF Escherichi coli |
|
|
|
|
|
|
| ECDC: E.coli DATABASE COLLECTION |
|
|
|
|
|
|
| ECOWEB |
|
|
|
|
|
|
|
|
|
| EnteriX |
|
|
|
|
|
|
|
|
|
| FOCUS ON METAGENOMICS (NATURE) |
|
|
|
|
|
|
| GENETREES |
|
|
|
|
|
|
|
|
| GENPROTEC: E.coli GENOME AND PROTEOME DATABASE |
|
|
|
|
|
| HGT-DB: HORIZONTAL GENE TRANSFER DATABASE |
|
|
|
|
|
| IMG: INTEGRATED MICROBIAL GENOMES |
|
|
|
|
|
|
| IMG: INTEGRATED MICROBIAL GENOMES |
|
|
|
|
|
|
| INSIGNIA |
|
|
|
|
|
|
|
|
|
| IS FINDER: INSERTION SEQUENCES DATABASE |
|
|
|
|
|
|
| LPSN: LIST OF PROKARYOTIC NAMES WITH STANDING IN
NOMENCLATURE |
|
|
|
| MBGD: MICROBIAL GENOME DATABASE FOR COMPARATIVE ANALYSIS |
|
|
|
|
| megx.net: MARINE ECOLOGICAL GENOMICS |
|
|
|
|
|
|
| MetaBioME: METAGENOMIC BIOMINING ENGINE |
|
|
|
|
|
| MG-RAST: META GENOME RAPID ANNOTATION USING SUBSYSTEM
TECHNOLOGY |
|
|
|
| MICROBE BROWSER |
|
|
|
|
|
|
|
|
| MICROBES ONLINE |
|
|
|
|
|
|
|
|
| MICROSCOPE: MICROBIAL GENOMES ANNOTATION AND COMPARATIVE
ANALYSIS PLATFORM |
|
|
| MiST: MICROBIAL SIGNAL TRANSDUCTION DATABASE |
|
|
|
|
|
| NCCB: NETHERLANDS CULTURE COLLECTION OF BACTERIA |
|
|
|
|
|
| ORPHELIA |
|
|
|
|
|
|
|
|
|
| PEDANT (MIPS) |
|
|
|
|
|
|
|
|
| PHYDBAC: PHYLOGENOMIC DISPLAY OF BACTERIAL GENES |
|
|
|
|
|
| PRODORIC¨: PROKARYOTIC DATABASE OF GENE REGULATION |
|
|
|
|
| PROTISA: TRANSLATION INITIATION SITE ANNOTATION IN
PROKARYOTIC ORGANISMS |
|
|
| PSORTdb |
|
|
|
|
|
|
|
|
|
| QIIME: QUANTITATIVE INSIGHTS INTO MICROBIAL ECOLOGY |
|
|
|
|
| REGTRANSBASE |
|
|
|
|
|
|
|
|
| SUBTILIST WWW SERVER |
|
|
|
|
|
|
|
| xBASE |
|
|
|
|
|
|
|
|
|
|
| Mouse
and Rat Genomes |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| FANTOM: FUNCTIONAL ANNOTATION OF MOUSE |
|
|
|
|
|
| IMSR: INTERNATIONAL MOUSE STRAIN RESOURCE |
|
|
|
|
|
| MGI: MOUSE GENOME INFORMATICS |
|
|
|
|
|
|
| Ensemble Mouse |
|
|
|
|
|
|
|
|
| MOUSE GENOME RESOURCES (NCBI) |
|
|
|
|
|
|
| MOUSE NOMENCLATURE HOME PAGE (MGI) |
|
|
|
|
|
|
| MOUSE TAXONOMY (NCBI) |
|
|
|
|
|
|
|
| MOUSE UNIGENE SEQUENCES |
|
|
|
|
|
|
|
| MPD: MOUSE PHENOME DATABASE |
|
|
|
|
|
|
| RAT GENOME BROWSER (ENSEMBL) |
|
|
|
|
|
|
| RAT GENOME RESOURCES (NCBI) |
|
|
|
|
|
|
|
| RATMAP: THE RAT GENOME DATABASE |
|
|
|
|
|
|
| RGD: RAT GENOME DATABASE |
|
|
|
|
|
|
|
|
| Multi-level
Analysis |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| dbGaP: GENOTYPE AND PHENOTYPE (NCBI) |
|
|
|
|
|
|
| E-CELL PROJECT |
|
|
|
|
|
|
|
|
| EMAP: EDINBURGH MOUSE ATLAS PROJECT |
|
|
|
|
|
|
| GENECARDS |
|
|
|
|
|
|
|
|
| OmicBrowse (RIKEN) |
|
|
|
|
|
|
|
|
| KEGG: KYOTO ENCYCLOPEDIA OF GENES AND GENOMES |
|
|
|
|
|
| MONOD: MODELERÕS NOTEBOOK AND DATASTORE |
|
|
|
|
|
| VIRTUAL CELL MODELING AND SIMULATION FRAMEWORK |
|
|
|
|
|
|
| Nematode
Genome |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Caenorhabditis elegans WWW Server |
|
|
|
|
|
|
| Caenorhabditis Genome Sequencing Projects |
|
|
|
|
|
|
| CENTER FOR C.elegans ANATOMY |
|
|
|
|
|
|
|
| NEMATODE.NET |
|
|
|
|
|
|
|
|
| WORMATLAS |
|
|
|
|
|
|
|
|
| WORMBASE LITERATURE SEARCH |
|
|
|
|
|
|
|
|
| Organelle
Genomes |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Arabidopsis MITOCHONDRIAL PROTEOME PROJECT |
|
|
|
|
|
| COMPLETE ORGANELLE GENOMES |
|
|
|
|
|
|
|
| FMGP: FUNGAL MITOCHONDRIAL GENOME PROJECT |
|
|
|
|
|
| FUGOID: FUNCTIONAL GENOMICS OF ORGANELLAR INTRONS DATABASE |
|
|
|
| GenDEcoder |
|
|
|
|
|
|
|
|
| GOBASE |
|
|
|
|
|
|
|
|
|
| MiGENES DATABASE |
|
|
|
|
|
|
|
|
| MITODAT: MENDELIAN INHERITANCE AND THE MITOCHONDRION |
|
|
|
|
| MITOMAP: HUMAN MITOCHONDRIAL GENOME DATABASE |
|
|
|
|
|
| MITOP: MITOCHONDRIAL PROTEOME |
|
|
|
|
|
|
| MITOPROT |
|
|
|
|
|
|
|
|
|
| MitoProteome Database |
|
|
|
|
|
|
|
| mtDB: HUMAN MITOCHONDRIAL GENOME DATABASE |
|
|
|
|
|
| OGMP: ORGANELLE GENOME MEGASEQUENCING PROGRAM |
|
|
|
|
| ORGANELLE GENOMES RESOURCES (NCBI) |
|
|
|
|
|
|
| ORGANELLEDB: DATABASE OF ORGANELLES AND PROTEIN COMPLEXES |
|
|
|
|
| PEROXISOMEDB |
|
|
|
|
|
|
|
|
| RNA EDITING WEB SITE |
|
|
|
|
|
|
|
|
| SubMito |
|
|
|
|
|
|
|
|
|
|
| Plant
Genomes |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| AGBASE |
|
|
|
|
|
|
|
|
|
| Arabidopsis thaliana SMALL RNA PROJECT |
|
|
|
|
|
|
| ARABINET: Arabidopis INFORMATION ON THE WWW |
|
|
|
|
|
| AraCyc |
|
|
|
|
|
|
|
|
|
| AthaMap |
|
|
|
|
|
|
|
|
|
| ATIDB: Arabidopsis thaliana INTEGRATED DATABASE |
|
|
|
|
|
| AtNoPDB: Arabidopsis NUCLEOLAR PROTEIN DATABASE |
|
|
|
|
|
| ATTED: Arabidopis thaliana TRANS-FACTOR AND CIS-ELEMENT
PREDICTION DATABASE |
|
|
| BARLEY GENOME (NCBI) |
|
|
|
|
|
|
|
| BARLEY MUTANTS |
|
|
|
|
|
|
|
|
| BARLEY SNP |
|
|
|
|
|
|
|
|
| BARLEYBASE |
|
|
|
|
|
|
|
|
| BIOACTIVE NUTRIENT EXPLORER |
|
|
|
|
|
|
|
| COMPARATIVE ANALYSIS OF LEGUME GENOMES |
|
|
|
|
|
| CR-EST: CROP ESTs |
|
|
|
|
|
|
|
|
| DENDROME: FOREST TREE GENOME DATABASE |
|
|
|
|
|
|
| FLAGdb++ |
|
|
|
|
|
|
|
|
|
| GERMINATE |
|
|
|
|
|
|
|
|
| GRAINGENES |
|
|
|
|
|
|
|
|
| GRAMENE |
|
|
|
|
|
|
|
|
|
| GRAMENE PATHWAY |
|
|
|
|
|
|
|
|
| IPLANTª COLLABORATIVE |
|
|
|
|
|
|
|
| IPNI: THE INTERNATIONAL PLANT NAMES INDEX |
|
|
|
|
|
| KATANA: KAZUSA Arabidopis thaliana ANNOTATION ABSTRACT |
|
|
|
|
| MAIZEGDB: MAIZE GENETICS AND GENOMICS DATABASE |
|
|
|
|
|
| MICROBE BROWSER |
|
|
|
|
|
|
|
|
| NASC: EUROPEAN Arabidopsis STOCK CENTRE |
|
|
|
|
|
|
| NETPLANTGENE SERVER |
|
|
|
|
|
|
|
| NewCROPª |
|
|
|
|
|
|
|
|
| PathoPlant¨ |
|
|
|
|
|
|
|
|
| PLAN2L: PLANT ANNOTATION TO LITERATURE |
|
|
|
|
|
|
| PLANT BIOINFORMATICS PORTAL |
|
|
|
|
|
|
|
| PLANT DNA C-insert into btk_08_data |
|
|
|
|
|
|
| PLANT GENOME RESOURCES CENTER |
|
|
|
|
|
|
| PLANT GENOMES CENTRAL (NCBI) |
|
|
|
|
|
|
|
| PLANT GENOMES QUERY (NCBI) |
|
|
|
|
|
|
|
| PLANT MPSS DATABASES |
|
|
|
|
|
|
|
| PLANT snoRNA DATABASE |
|
|
|
|
|
|
|
| PlantCARE: Cis-ACTING REGULATORY ELEMENT |
|
|
|
|
|
|
| PlantGDB: PLANT GENOME DATABASE |
|
|
|
|
|
|
| PLANTMARKERS |
|
|
|
|
|
|
|
|
| PlantsP: FUNCTIONAL GENOMICS OF PLANT PHOSPHORYLATION |
|
|
|
|
| PlantsT: FUNCTIONAL GENOMICS OF PLANT TRANSPORTERS |
|
|
|
|
| PlnTFDB: PLANT TRANSCRIPTION FACTOR DATABASE |
|
|
|
|
|
| PMRD: PLANT MICRORNA DATABASE |
|
|
|
|
|
|
| POGs/PlantRBP: PUTATIVE ORTHOLOGOUS GROUPS/PLANT RNA BINDING
PROTEIN DATABASE |
|
|
| POMAMO |
|
|
|
|
|
|
|
|
|
| PREP SUITE: PREDICTIVE RNA EDITORS FOR PLANTS |
|
|
|
|
|
| PRG: PLANT RESISTANCE GENES |
|
|
|
|
|
|
|
| RARGE: RIKEN Arabidopsis GENOME ENCYCLOPEDIA |
|
|
|
|
|
| RICE ANNOTATION DATABASE |
|
|
|
|
|
|
|
| RIKEN Arabidopis TRANSCRIPTION FACTOR DATABASE |
|
|
|
|
|
| SALAD DATABASE |
|
|
|
|
|
|
|
|
| SIGnAL: SALK INSTITUTE GENOMIC ANALYSIS LABORATORY |
|
|
|
|
|
| SOYBASE |
|
|
|
|
|
|
|
|
|
| TAED: THE ADAPTIVE EVOLUTION DATABASE |
|
|
|
|
|
|
| TAIR: THE Arabidopsis INFORMATION RESOURCE |
|
|
|
|
|
| TIGR Arabidopsis thaliana Database |
|
|
|
|
|
|
| TIGR PLANT REPEAT DATABASE |
|
|
|
|
|
|
|
| TropGENE |
|
|
|
|
|
|
|
|
|
| UK CROPNET BIOINFORMATICS NETWORK |
|
|
|
|
|
|
| WhoGA: WHOLE GENOME ANNOTATION |
|
|
|
|
|
|
|
| Viral
Genomes |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| BIG PICTURE BOOK OF VIRUSES |
|
|
|
|
|
|
|
| HIV DATABASES |
|
|
|
|
|
|
|
|
| HIV DRUG RESISTANCE DATABASE |
|
|
|
|
|
|
|
| ICTVdB PICTURE GALLERY |
|
|
|
|
|
|
|
| INFLUENZA SEQUENCE DATABASE |
|
|
|
|
|
|
|
| INFLUENZA VIRUS RESOURCE (NCBI) |
|
|
|
|
|
|
| PLANT VIRUSES (CABRI CATALOG) |
|
|
|
|
|
|
|
| RETROVIRUSES (NCBI) |
|
|
|
|
|
|
|
|
| SUBVIRAL RNA DATABASE |
|
|
|
|
|
|
|
| VIROLIGO |
|
|
|
|
|
|
|
|
|
|
| Basic
Plug-in by Subio Inc. |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Normalization |
|
|
|
|
|
|
|
|
| Filtering |
|
|
|
|
|
|
|
|
|
| Find Similar
Pattern |
|
|
|
|
|
|
|
|
| Differential
Expression |
|
|
|
|
|
|
|
|
| ANOVA |
|
|
|
|
|
|
|
|
|
| Clustering |
|
|
|
|
|
|
|
|
|
| PCA |
|
|
|
|
|
|
|
|
|
|
| National
Animal Genome Research Program |
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Animal QTLdb |
|
|
|
|
|
|
|
|
| Animal GBrowse
Tracks |
|
|
|
|
|
|
|
| Biomart for
livestock |
|
|
|
|
|
|
|
|
| NAGRP Blast Server |
|
|
|
|
|
|
|
|
| VCmap |
|
|
|
|
|
|
|
|
|
| NAGRP
Bioinformatics Tool Box |
|
|
|
|
|
|
|
| Data
Repository |
|
|
|
|
|
|
|
|
| Software
Repository |
|
|
|
|
|
|
|
|
| Genome
browser |
|
|
|
|
|
|
|
|
|
| Nucleotide
sequence database |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| International
Nucleotide Sequence database collaboration |
|
|
|
|
| DDBJ - DNA data bank of
Japan |
|
|
|
|
|
|
|
| EBI Biosample
Database |
|
|
|
|
|
|
|
| EBI patent
sequence |
|
|
|
|
|
|
|
|
| European Genome-phenome
archive (EGA) |
|
|
|
|
|
|
| European Nucleotide Archive |
|
|
|
|
|
|
|
| Genbank |
|
|
|
|
|
|
|
|
|
| NCBI
BioSample/BioProject |
|
|
|
|
|
|
|
| neXtProt |
|
|
|
|
|
|
|
|
|
| The sequence Read
Archive (SRA) |
|
|
|
|
|
|
|
| Coding
and non-coding DNA |
|
|
|
|
|
|
|
| ACLAME - A Classification of
Mobile genetic Elements |
|
|
|
|
|
| AREsite |
|
|
|
|
|
|
|
|
|
| Ciliate
IES-MDS database |
|
|
|
|
|
|
|
| CORG - A database for
Comparative Regulatory Genomics |
|
|
|
|
|
| CUTG - Codon Usage
Tabulated from GenBank |
|
|
|
|
|
|
| DiProDB |
|
|
|
|
|
|
|
|
|
| ECRbase |
|
|
|
|
|
|
|
|
|
| FREP |
|
|
|
|
|
|
|
|
|
| Genetic Codes |
|
|
|
|
|
|
|
|
| GISSD |
|
|
|
|
|
|
|
|
|
| GyDB |
|
|
|
|
|
|
|
|
|
| HumHot |
|
|
|
|
|
|
|
|
|
| InSatDb |
|
|
|
|
|
|
|
|
|
| Isfinder |
|
|
|
|
|
|
|
|
|
| Islander |
|
|
|
|
|
|
|
|
|
| L1Base |
|
|
|
|
|
|
|
|
|
| MethDB |
|
|
|
|
|
|
|
|
|
| MICdb - Database
of Prokaryotic Microsatellites |
|
|
|
|
|
| NGSmethDB |
|
|
|
|
|
|
|
|
| NPRD - Nucleosome
Positioning Region Database |
|
|
|
|
|
| OriDB - The DNA Replication
Origin Database |
|
|
|
|
|
|
| PANDIT |
|
|
|
|
|
|
|
|
|
| Patome |
|
|
|
|
|
|
|
|
|
| Plant
repeat database |
|
|
|
|
|
|
|
|
| PolymiRTS |
|
|
|
|
|
|
|
|
|
| PseudoGene |
|
|
|
|
|
|
|
|
| RECODE |
|
|
|
|
|
|
|
|
|
| RefSeq |
|
|
|
|
|
|
|
|
|
| RegTransBase |
|
|
|
|
|
|
|
|
| RetrOryza |
|
|
|
|
|
|
|
|
|
| S/MARt
DB |
|
|
|
|
|
|
|
|
| SNPSTR |
|
|
|
|
|
|
|
|
|
| STRBase |
|
|
|
|
|
|
|
|
|
| Synthetic
Gene Database |
|
|
|
|
|
|
|
| TassDB |
|
|
|
|
|
|
|
|
|
| TIGR Plant Transcript
Assembly database |
|
|
|
|
|
|
| TranspoGene |
|
|
|
|
|
|
|
|
| TRDB |
|
|
|
|
|
|
|
|
|
| Ucbase and miRfunc |
|
|
|
|
|
|
|
|
| UgMicroSatdb |
|
|
|
|
|
|
|
|
| UniVec |
|
|
|
|
|
|
|
|
|
| UTRdb/UTRsite |
|
|
|
|
|
|
|
|
| UTRome |
|
|
|
|
|
|
|
|
|
| VectorDB |
|
|
|
|
|
|
|
|
|
| VISTA Enhancer Browser |
|
|
|
|
|
|
|
| Gene
structure, introns and exons, splice sites |
|
|
|
|
|
| ARTADEdb |
|
|
|
|
|
|
|
|
|
| ASAP II |
|
|
|
|
|
|
|
|
|
| ASDB -
Alternative Splicing Database |
|
|
|
|
|
|
| ASHESdb |
|
|
|
|
|
|
|
|
|
| ASPicDB |
|
|
|
|
|
|
|
|
|
| ASTD |
|
|
|
|
|
|
|
|
|
| ChimerDB |
|
|
|
|
|
|
|
|
|
| DBASS5/3 |
|
|
|
|
|
|
|
|
|
| Ecgene |
|
|
|
|
|
|
|
|
|
| EDAS - EST-Derived
Alternative Splicing Database |
|
|
|
|
|
| EID: Exon-Intron
Database |
|
|
|
|
|
|
|
| ExInt |
|
|
|
|
|
|
|
|
|
| ExtraTrain |
|
|
|
|
|
|
|
|
|
| FESD - Functional
Element SNPs Database |
|
|
|
|
|
|
| FUGOID |
|
|
|
|
|
|
|
|
|
| H-DBAS |
|
|
|
|
|
|
|
|
|
| Hollywood |
|
|
|
|
|
|
|
|
| HS3D -
Homo Sapiens Splice Sites Database |
|
|
|
|
|
|
| Intronerator |
|
|
|
|
|
|
|
|
| ProSAS |
|
|
|
|
|
|
|
|
|
| SpliceDB |
|
|
|
|
|
|
|
|
|
| SpliceInfo |
|
|
|
|
|
|
|
|
|
| SpliceNest |
|
|
|
|
|
|
|
|
|
| U12DB |
|
|
|
|
|
|
|
|
|
| Xpro |
|
|
|
|
|
|
|
|
|
| Yeast Intron Database |
|
|
|
|
|
|
|
|
| Transcriptional
regulator sites and transcription factors |
|
|
|
|
|
| 3D-Footprint |
|
|
|
|
|
|
|
|
| ABS |
|
|
|
|
|
|
|
|
|
| ACTIVITY |
|
|
|
|
|
|
|
|
|
| AGRIS -
Arabidopsis Gene Regulatory Information Server |
|
|
|
|
|
| AnimalTFDB |
|
|
|
|
|
|
|
|
| ASPD |
|
|
|
|
|
|
|
|
|
| Cancer Chromosomes |
|
|
|
|
|
|
|
|
| cisRED |
|
|
|
|
|
|
|
|
|
| CMGSDB |
|
|
|
|
|
|
|
|
|
| CoryneRegNet |
|
|
|
|
|
|
|
|
| COXPRESdb |
|
|
|
|
|
|
|
|
| CTCF Binding site
Database |
|
|
|
|
|
|
|
| DBD |
|
|
|
|
|
|
|
|
|
| DBTBS |
|
|
|
|
|
|
|
|
|
| DoOP - Database of Orthologous
Promoters |
|
|
|
|
|
|
| DPInteract |
|
|
|
|
|
|
|
|
| ECRbase |
|
|
|
|
|
|
|
|
|
| EPD |
|
|
|
|
|
|
|
|
|
| FlyFactorSurvey |
|
|
|
|
|
|
|
|
| FlyTF |
|
|
|
|
|
|
|
|
|
| GeneNet |
|
|
|
|
|
|
|
|
|
| GenomeTraFac |
|
|
|
|
|
|
|
|
| Greglist |
|
|
|
|
|
|
|
|
|
| HTPSELEX |
|
|
|
|
|
|
|
|
|
| JASPAR |
|
|
|
|
|
|
|
|
|
| MachiBase |
|
|
|
|
|
|
|
|
|
| MAPPER |
|
|
|
|
|
|
|
|
|
| MPromDB |
|
|
|
|
|
|
|
|
|
| ODB - Operon database |
|
|
|
|
|
|
|
| ooTFD |
|
|
|
|
|
|
|
|
|
| ORegAnno |
|
|
|
|
|
|
|
|
|
| Osteo-Promoter Database |
|
|
|
|
|
|
|
| PAZAR |
|
|
|
|
|
|
|
|
|
| PLACE |
|
|
|
|
|
|
|
|
|
| Plant
Stress-Responsive Gene Catalog |
|
|
|
|
|
|
| PlantCARE |
|
|
|
|
|
|
|
|
|
| PlantProm |
|
|
|
|
|
|
|
|
| PPDB: Plant Promoter
Database |
|
|
|
|
|
|
|
| PReMod |
|
|
|
|
|
|
|
|
|
| PRODORIC |
|
|
|
|
|
|
|
|
|
| PromEC |
|
|
|
|
|
|
|
|
|
| ProTISA |
|
|
|
|
|
|
|
|
|
| PTM-Switchboard |
|
|
|
|
|
|
|
|
| QuadBase |
|
|
|
|
|
|
|
|
|
| REDfly |
|
|
|
|
|
|
|
|
|
| RegPrecise |
|
|
|
|
|
|
|
|
|
| RegulonDB |
|
|
|
|
|
|
|
|
| rSNP
Guide |
|
|
|
|
|
|
|
|
| ScerTF |
|
|
|
|
|
|
|
|
|
| SCPD - Saccharomyces
cerevisiae promotor database |
|
|
|
|
|
| SELEXdb |
|
|
|
|
|
|
|
|
|
| SKY/M-FISH and CGH |
|
|
|
|
|
|
|
|
| SwissRegulon |
|
|
|
|
|
|
|
|
| TcoF-DB |
|
|
|
|
|
|
|
|
|
| Telomerase database |
|
|
|
|
|
|
|
|
| TESS |
|
|
|
|
|
|
|
|
|
| TiProD |
|
|
|
|
|
|
|
|
|
| TRACTOR db |
|
|
|
|
|
|
|
|
| TRANSCompel |
|
|
|
|
|
|
|
|
| TRANSFAC |
|
|
|
|
|
|
|
|
|
| TransfactomeDB |
|
|
|
|
|
|
|
|
| TransmiR |
|
|
|
|
|
|
|
|
|
| TRANSPATH |
|
|
|
|
|
|
|
|
| Transterm |
|
|
|
|
|
|
|
|
|
| TRED - Transcriptional
Regulatory Element Database |
|
|
|
|
|
| TRRD |
|
|
|
|
|
|
|
|
|
| TrSDB |
|
|
|
|
|
|
|
|
|
| UniPROBE |
|
|
|
|
|
|
|
|
|
| VISTA Enhancer Browser |
|
|
|
|
|
|
|
| WebGeSTer DB |
|
|
|
|
|
|
|
|
| YEASTRACT |
|
|
|
|
|
|
|
|
| YeTFaSCo |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| RNA
sequence databases |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| 16S and 23S Ribosomal RNA
Mutation Database |
|
|
|
|
|
| 3D
rRNA modification maps |
|
|
|
|
|
|
|
| 5S Ribosomal
RNA Database |
|
|
|
|
|
|
|
| Aptamer Database |
|
|
|
|
|
|
|
|
| ARED |
|
|
|
|
|
|
|
|
|
| Argonaute |
|
|
|
|
|
|
|
|
|
| BPS |
|
|
|
|
|
|
|
|
|
| Cereal Small RNA
Database |
|
|
|
|
|
|
|
| CORG - A database for
Comparative Regulatory Genomics |
|
|
|
|
|
| Database for
Bacterial Group II Introns |
|
|
|
|
|
|
| dbRES |
|
|
|
|
|
|
|
|
|
| deepBase |
|
|
|
|
|
|
|
|
|
| doRiNA |
|
|
|
|
|
|
|
|
|
| European rRNA database |
|
|
|
|
|
|
|
| FlyRNAi |
|
|
|
|
|
|
|
|
|
| fRNAdb |
|
|
|
|
|
|
|
|
|
| Greengenes |
|
|
|
|
|
|
|
|
| GRSDB |
|
|
|
|
|
|
|
|
|
| GtRDB - Genomic tRNA
Database |
|
|
|
|
|
|
|
| HIV Sequence
Database |
|
|
|
|
|
|
|
| HuSiDa - Human siRNA database |
|
|
|
|
|
|
|
| Intronerator |
|
|
|
|
|
|
|
|
| IRESdb
- the Internal Ribosome Entry Site Database |
|
|
|
|
|
| IRESite |
|
|
|
|
|
|
|
|
|
| ITS2 |
|
|
|
|
|
|
|
|
|
| IncRNAdb |
|
|
|
|
|
|
|
|
|
| MeRNA |
|
|
|
|
|
|
|
|
|
| mESAdb |
|
|
|
|
|
|
|
|
|
| microRNA.org |
|
|
|
|
|
|
|
|
| miR2Disease |
|
|
|
|
|
|
|
|
| miRBase |
|
|
|
|
|
|
|
|
|
| miRecords |
|
|
|
|
|
|
|
|
|
| miREX |
|
|
|
|
|
|
|
|
|
| miRGator |
|
|
|
|
|
|
|
|
|
| miRGen |
|
|
|
|
|
|
|
|
|
| miRNAMap |
|
|
|
|
|
|
|
|
| miRNEST |
|
|
|
|
|
|
|
|
|
| miROrtho |
|
|
|
|
|
|
|
|
|
| miRTarBase |
|
|
|
|
|
|
|
|
| MODOMICS |
|
|
|
|
|
|
|
|
| NAPP |
|
|
|
|
|
|
|
|
|
| NATsDB |
|
|
|
|
|
|
|
|
|
| NCIR -
Non-Canonical Interactions in RNA |
|
|
|
|
|
|
| ncRNA database |
|
|
|
|
|
|
|
|
| NONCODE |
|
|
|
|
|
|
|
|
|
| NPInter |
|
|
|
|
|
|
|
|
|
| NRED |
|
|
|
|
|
|
|
|
|
| piRNABank |
|
|
|
|
|
|
|
|
| Plant snoRNA DB |
|
|
|
|
|
|
|
|
| PLMItRNA |
|
|
|
|
|
|
|
|
|
| PmiRKB |
|
|
|
|
|
|
|
|
|
| PolyA_DB |
|
|
|
|
|
|
|
|
|
| PseudoBase |
|
|
|
|
|
|
|
|
| REDIdb |
|
|
|
|
|
|
|
|
|
| RepTar |
|
|
|
|
|
|
|
|
|
| Rfam |
|
|
|
|
|
|
|
|
|
| Ribomosal Database Project
(RDP-II) |
|
|
|
|
|
|
| RISSC - Ribosomal Internal
Spacer Sequence Collection |
|
|
|
|
|
| RNA FRABASE |
|
|
|
|
|
|
|
|
| RNA
Modification Database |
|
|
|
|
|
|
|
| RNA SSTRAND |
|
|
|
|
|
|
|
|
| RNAdb |
|
|
|
|
|
|
|
|
|
| RNAi codex |
|
|
|
|
|
|
|
|
| RNAJuncion |
|
|
|
|
|
|
|
|
| SELEXdb |
|
|
|
|
|
|
|
|
|
| SILVA: a comprehensive
online resource for quality checked and aligned ribosomal RNA sequence data |
|
| siRecords |
|
|
|
|
|
|
|
|
|
| siRNAdb |
|
|
|
|
|
|
|
|
|
| Sno/scaRNAbase |
|
|
|
|
|
|
|
|
| snoRNA-LBME-db |
|
|
|
|
|
|
|
|
| sRNAMap |
|
|
|
|
|
|
|
|
|
| SRPDB |
|
|
|
|
|
|
|
|
|
| Starbase |
|
|
|
|
|
|
|
|
|
| Subviral RNA Database |
|
|
|
|
|
|
|
|
| TarBase |
|
|
|
|
|
|
|
|
|
| The Small
Subunit rRNA Modification Database |
|
|
|
|
|
| The tmRNA website |
|
|
|
|
|
|
|
|
| tmRDB |
|
|
|
|
|
|
|
|
|
| tRNAdb |
|
|
|
|
|
|
|
|
|
| tRNADB-CE |
|
|
|
|
|
|
|
|
| UTRdb/UTRsite |
|
|
|
|
|
|
|
|
| Vir-Mir db |
|
|
|
|
|
|
|
|
|
| VIRsiRNAdb |
|
|
|
|
|
|
|
|
| Yeast snoRNA Database |
|
|
|
|
|
|
|
|
| Protein
Sequence Databases |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| General
Sequence Databases |
|
|
|
|
|
|
|
| CharProtDB |
|
|
|
|
|
|
|
|
| COMBREX |
|
|
|
|
|
|
|
|
|
| EXProt |
|
|
|
|
|
|
|
|
|
| MIPS resources |
|
|
|
|
|
|
|
|
| NCBI Protein
database |
|
|
|
|
|
|
|
|
| PA-GOSUB |
|
|
|
|
|
|
|
|
|
| Patome |
|
|
|
|
|
|
|
|
|
| PIR - Protein Information
Resource |
|
|
|
|
|
|
| PRF |
|
|
|
|
|
|
|
|
|
| RefSeq |
|
|
|
|
|
|
|
|
|
| TCDB |
|
|
|
|
|
|
|
|
|
| UniParc |
|
|
|
|
|
|
|
|
|
| UniProt |
|
|
|
|
|
|
|
|
|
| UniRef |
|
|
|
|
|
|
|
|
|
| UniSave |
|
|
|
|
|
|
|
|
|
| Protein
properties |
|
|
|
|
|
|
|
|
| Aaindex |
|
|
|
|
|
|
|
|
|
| Binding DB |
|
|
|
|
|
|
|
|
| CPLA |
|
|
|
|
|
|
|
|
|
| Cybase |
|
|
|
|
|
|
|
|
|
| dbPTM |
|
|
|
|
|
|
|
|
|
| HHMD |
|
|
|
|
|
|
|
|
|
| iProLINK |
|
|
|
|
|
|
|
|
|
| KDBI |
|
|
|
|
|
|
|
|
|
| MALISAM |
|
|
|
|
|
|
|
|
|
| MegaMotifbase |
|
|
|
|
|
|
|
|
| PDF - Protein Folding
Database |
|
|
|
|
|
|
|
| PIDD |
|
|
|
|
|
|
|
|
|
| PINT |
|
|
|
|
|
|
|
|
|
| PPD |
|
|
|
|
|
|
|
|
|
| PPT-DB |
|
|
|
|
|
|
|
|
|
| ProTherm |
|
|
|
|
|
|
|
|
|
| PRTAD |
|
|
|
|
|
|
|
|
|
| REFOLD |
|
|
|
|
|
|
|
|
|
| TopFIND |
|
|
|
|
|
|
|
|
|
| Protein
Localization and targeting |
|
|
|
|
|
|
| CentrosomeDB |
|
|
|
|
|
|
|
|
| DBSubLoc
- Database of protein Subcellular Localization |
|
|
|
|
|
| eSLBI -
eukaryotic Subcellular Localization database |
|
|
|
|
|
| Interfil |
|
|
|
|
|
|
|
|
|
| LOCATE |
|
|
|
|
|
|
|
|
|
| LocDB |
|
|
|
|
|
|
|
|
|
| MiCroKit |
|
|
|
|
|
|
|
|
|
| MitoRes |
|
|
|
|
|
|
|
|
|
| NESbase |
|
|
|
|
|
|
|
|
|
| NLSdb |
|
|
|
|
|
|
|
|
|
| NMPdb - Nuclear
matrix associated proteins database |
|
|
|
|
|
| NOPdb: Nucleolar
Proteome Database |
|
|
|
|
|
|
| NPD - Nuclear Protein
Database |
|
|
|
|
|
|
|
| Nuclear
Receptor Resource |
|
|
|
|
|
|
|
| NUREBASE |
|
|
|
|
|
|
|
|
|
| NURSA |
|
|
|
|
|
|
|
|
|
| OGRe - Organellar Genom
Retrieval |
|
|
|
|
|
|
| OPMdb |
|
|
|
|
|
|
|
|
|
| PeroxisomeDB |
|
|
|
|
|
|
|
|
| PSORTdb |
|
|
|
|
|
|
|
|
|
| Secreted Protein Database |
|
|
|
|
|
|
|
| SUBA |
|
|
|
|
|
|
|
|
|
| THGS -
Transmembrane Helices in Genome Sequences |
|
|
|
|
|
| TMPad |
|
|
|
|
|
|
|
|
|
| TopDB |
|
|
|
|
|
|
|
|
|
| Transmembrane
Protein DataBase |
|
|
|
|
|
|
|
| Protein
sequence motifs and active sites |
|
|
|
|
|
|
| ASC - Active
Sequence Collection |
|
|
|
|
|
|
|
| Blocks |
|
|
|
|
|
|
|
|
|
| CoC Central |
|
|
|
|
|
|
|
|
| COMe - Co-Ordination of
Metals etc. |
|
|
|
|
|
|
| CoPS |
|
|
|
|
|
|
|
|
|
| CSA
- Catalytic Site Atlas |
|
|
|
|
|
|
|
| eBLOCKS |
|
|
|
|
|
|
|
|
|
| eF-site
- Electrostatic surface of Functional site |
|
|
|
|
|
|
| ELM |
|
|
|
|
|
|
|
|
|
| FireDB |
|
|
|
|
|
|
|
|
|
| InterPro |
|
|
|
|
|
|
|
|
|
| MeMotif |
|
|
|
|
|
|
|
|
|
| Metalloprotein Site
Database |
|
|
|
|
|
|
|
| MimoDB |
|
|
|
|
|
|
|
|
|
| Minimotif Miner |
|
|
|
|
|
|
|
|
| O-GLYCBASE |
|
|
|
|
|
|
|
|
| PDBSite |
|
|
|
|
|
|
|
|
|
| PHOSIDA |
|
|
|
|
|
|
|
|
|
| Phospho3D |
|
|
|
|
|
|
|
|
| PhosphoSItePlus |
|
|
|
|
|
|
|
|
| PolyQ |
|
|
|
|
|
|
|
|
|
| PRIDB |
|
|
|
|
|
|
|
|
|
| PRINTS |
|
|
|
|
|
|
|
|
|
| PROMISE |
|
|
|
|
|
|
|
|
|
| ProRule |
|
|
|
|
|
|
|
|
|
| PROSITE |
|
|
|
|
|
|
|
|
|
| ProTeus |
|
|
|
|
|
|
|
|
|
| SDR |
|
|
|
|
|
|
|
|
|
| SitesBase |
|
|
|
|
|
|
|
|
|
| SitEx |
|
|
|
|
|
|
|
|
|
| SuperSite |
|
|
|
|
|
|
|
|
|
| TMFunction |
|
|
|
|
|
|
|
|
| Protein
domain database; protein classification |
|
|
|
|
|
| ADDA
- A Domain Database |
|
|
|
|
|
|
|
| BALiBASE |
|
|
|
|
|
|
|
|
|
| Benchmark |
|
|
|
|
|
|
|
|
| BIOZON |
|
|
|
|
|
|
|
|
|
| CDD |
|
|
|
|
|
|
|
|
|
| CluSTr |
|
|
|
|
|
|
|
|
|
| COG - Clusters of
Orthologous Groups of proteins |
|
|
|
|
|
| DomIns - Database of Domain
Insertions |
|
|
|
|
|
|
| eggNOG |
|
|
|
|
|
|
|
|
|
| EPGD |
|
|
|
|
|
|
|
|
|
| EVEREST -
Evolutionary Ensembles of Recurrent SegmenTs |
|
|
|
|
|
| FunShift |
|
|
|
|
|
|
|
|
|
| FusionDB |
|
|
|
|
|
|
|
|
|
| Hits |
|
|
|
|
|
|
|
|
|
| InterDom |
|
|
|
|
|
|
|
|
|
| InterPro |
|
|
|
|
|
|
|
|
|
| iProClass |
|
|
|
|
|
|
|
|
|
| MulPSSM |
|
|
|
|
|
|
|
|
|
| OMA |
|
|
|
|
|
|
|
|
|
| OPTIC |
|
|
|
|
|
|
|
|
|
| OrthoDB |
|
|
|
|
|
|
|
|
|
| PairsDB |
|
|
|
|
|
|
|
|
|
| PALI |
|
|
|
|
|
|
|
|
|
| PANDIT |
|
|
|
|
|
|
|
|
|
| PANTHER |
|
|
|
|
|
|
|
|
|
| Pfam |
|
|
|
|
|
|
|
|
|
| PhyloFacts |
|
|
|
|
|
|
|
|
| PIRSF |
|
|
|
|
|
|
|
|
|
| ProDom |
|
|
|
|
|
|
|
|
|
| Protein Clusters |
|
|
|
|
|
|
|
|
| Protein Segment Finder |
|
|
|
|
|
|
|
| ProtoNet |
|
|
|
|
|
|
|
|
|
| RBPDB |
|
|
|
|
|
|
|
|
|
| SBASE |
|
|
|
|
|
|
|
|
|
| SIMAP |
|
|
|
|
|
|
|
|
|
| SISYPHUS |
|
|
|
|
|
|
|
|
|
| SMART |
|
|
|
|
|
|
|
|
|
| SUPFAM |
|
|
|
|
|
|
|
|
|
| TCDB |
|
|
|
|
|
|
|
|
|
| TIGRFAMs |
|
|
|
|
|
|
|
|
|
| Databases
of individual protein families |
|
|
|
|
|
|
| ABCdb |
|
|
|
|
|
|
|
|
|
| Aminoacyl-tRNA
synthetase database |
|
|
|
|
|
|
| Animal Toxin
Database |
|
|
|
|
|
|
|
| ARAMEMNON |
|
|
|
|
|
|
|
|
| BANMOKI |
|
|
|
|
|
|
|
|
|
| BYKdb |
|
|
|
|
|
|
|
|
|
| CAZy |
|
|
|
|
|
|
|
|
|
| ChromDB |
|
|
|
|
|
|
|
|
|
| CLIPZ |
|
|
|
|
|
|
|
|
|
| ConoServer |
|
|
|
|
|
|
|
|
| cpnDB |
|
|
|
|
|
|
|
|
|
| CREMOFAC |
|
|
|
|
|
|
|
|
| CSDBase -
Cold Shock Domain database |
|
|
|
|
|
|
| CyMoBase |
|
|
|
|
|
|
|
|
|
| DAnCER |
|
|
|
|
|
|
|
|
|
| DB-PABP |
|
|
|
|
|
|
|
|
|
| DCCP -
Database of Copper-Chelating Proteins |
|
|
|
|
|
|
| Death Domain database |
|
|
|
|
|
|
|
| Defensins
Knowledgebase |
|
|
|
|
|
|
|
| Degradome Database |
|
|
|
|
|
|
|
|
| DSD |
|
|
|
|
|
|
|
|
|
| Endogenous
GPCR List |
|
|
|
|
|
|
|
|
| EROP-Moscow |
|
|
|
|
|
|
|
|
| ESTHER |
|
|
|
|
|
|
|
|
|
| FCP |
|
|
|
|
|
|
|
|
|
| FUNPEP |
|
|
|
|
|
|
|
|
|
| GPCR NaVa database |
|
|
|
|
|
|
|
|
| GPCRDB |
|
|
|
|
|
|
|
|
|
| gpDB -
G-protein database |
|
|
|
|
|
|
|
| Heme Protein
Database |
|
|
|
|
|
|
|
| Histome |
|
|
|
|
|
|
|
|
|
| Histone
Database |
|
|
|
|
|
|
|
|
| HIV RT and Protease
sequence database |
|
|
|
|
|
|
| Homeobox
Page |
|
|
|
|
|
|
|
|
| Homeodomain
Resource |
|
|
|
|
|
|
|
| InBase |
|
|
|
|
|
|
|
|
|
| Kinomer |
|
|
|
|
|
|
|
|
|
| Knottin database |
|
|
|
|
|
|
|
|
| Laminin Database |
|
|
|
|
|
|
|
|
| LGICdb |
|
|
|
|
|
|
|
|
|
| Lipase Engineering
Database |
|
|
|
|
|
|
|
| Lipid
Maps |
|
|
|
|
|
|
|
|
| LOX-DB |
|
|
|
|
|
|
|
|
|
| MEROPS |
|
|
|
|
|
|
|
|
|
| MIPModDB |
|
|
|
|
|
|
|
|
| NORINE |
|
|
|
|
|
|
|
|
|
| Nuclear
Receptor Resource - |
|
|
|
|
|
|
|
| NucleaRDB |
|
|
|
|
|
|
|
|
| NUREBASE |
|
|
|
|
|
|
|
|
|
| NURSA |
|
|
|
|
|
|
|
|
|
| OKCAM |
|
|
|
|
|
|
|
|
|
| Olfactory
Receptor Database |
|
|
|
|
|
|
|
| OMPdb |
|
|
|
|
|
|
|
|
|
| Peptaibol |
|
|
|
|
|
|
|
|
|
| Peroxibase |
|
|
|
|
|
|
|
|
| PHYTOPROT |
|
|
|
|
|
|
|
|
| PLANT-Pis |
|
|
|
|
|
|
|
|
|
| PlantsP/PlantsT |
|
|
|
|
|
|
|
|
| PlantTFDB |
|
|
|
|
|
|
|
|
|
| PlantTribes |
|
|
|
|
|
|
|
|
| PLPMDB |
|
|
|
|
|
|
|
|
|
| Polbase |
|
|
|
|
|
|
|
|
|
| PREX |
|
|
|
|
|
|
|
|
|
| ProGlycProt |
|
|
|
|
|
|
|
|
| ProLysED - Prokaryotic
Lysis Enzymes Database |
|
|
|
|
|
| ProRepeat |
|
|
|
|
|
|
|
|
|
| Protein kinase
resource |
|
|
|
|
|
|
|
| REBASE |
|
|
|
|
|
|
|
|
|
| Ribonuclease
P Database |
|
|
|
|
|
|
|
| RNA helicase Database |
|
|
|
|
|
|
|
|
| RNRdb |
|
|
|
|
|
|
|
|
|
| RPG - Ribosomal
Protein Gene database |
|
|
|
|
|
|
| RTKdb - Receptor
Tyrosine Kinase database |
|
|
|
|
|
|
| SDAP |
|
|
|
|
|
|
|
|
|
| SelenoDB |
|
|
|
|
|
|
|
|
|
| SENTRA |
|
|
|
|
|
|
|
|
|
| SEVENS |
|
|
|
|
|
|
|
|
|
| SRPDB |
|
|
|
|
|
|
|
|
|
| SuperCYP |
|
|
|
|
|
|
|
|
|
| SysZNF |
|
|
|
|
|
|
|
|
|
| Telomerase database |
|
|
|
|
|
|
|
|
| ThYme |
|
|
|
|
|
|
|
|
|
| TransportDB |
|
|
|
|
|
|
|
|
| TRIP |
|
|
|
|
|
|
|
|
|
| UCSD -
Nature Signaling Gateway Molecule Pages |
|
|
|
|
|
| VKCDB -
Voltage-gated K+ Channel Database |
|
|
|
|
|
|
| Wnt Database |
|
|
|
|
|
|
|
|
| ZiFDB |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Structure
Databases |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Small
Molecules |
|
|
|
|
|
|
|
|
| AANT - Amino Acid -
Nucleotide interaction database |
|
|
|
|
|
| BitterDB |
|
|
|
|
|
|
|
|
|
| ChEBI - Chemical Entities
of Biological In |
|
|
|
|
|
|
| ChemBank |
|
|
|
|
|
|
|
|
|
| ChemDB |
|
|
|
|
|
|
|
|
|
| Crystallography Open Database |
|
|
|
|
|
|
|
| CSD-Cambridge
Structural Database |
|
|
|
|
|
|
| DrugBank |
|
|
|
|
|
|
|
|
|
| EDULISS |
|
|
|
|
|
|
|
|
|
| FragmentStore |
|
|
|
|
|
|
|
|
| Het-PDB Navi |
|
|
|
|
|
|
|
|
| HIC-Up |
|
|
|
|
|
|
|
|
|
| Klotho |
|
|
|
|
|
|
|
|
|
| LIGAND |
|
|
|
|
|
|
|
|
|
| MMsINC |
|
|
|
|
|
|
|
|
|
| PDB-Ligand |
|
|
|
|
|
|
|
|
| PubChem |
|
|
|
|
|
|
|
|
|
| R.E.DD.B. |
|
|
|
|
|
|
|
|
|
| SCRIPDB |
|
|
|
|
|
|
|
|
|
| SuperDrug |
|
|
|
|
|
|
|
|
|
| SuperNatural |
|
|
|
|
|
|
|
|
| SuperScent |
|
|
|
|
|
|
|
|
| SuperToxic |
|
|
|
|
|
|
|
|
| Carbohydrates |
|
|
|
|
|
|
|
|
| BCSDB/Glycoscience |
|
|
|
|
|
|
|
|
| CCSD
- Complex Carbohydrate Structure Database (CarbBank) |
|
|
|
|
| CSS - Carbohydrate
Structure Suite |
|
|
|
|
|
|
| Glycan |
|
|
|
|
|
|
|
|
|
| Glycoconjugate Data
Bank |
|
|
|
|
|
|
|
| GlycoMapsDB |
|
|
|
|
|
|
|
|
| GlycomeDB |
|
|
|
|
|
|
|
|
| GlycoSuiteDB |
|
|
|
|
|
|
|
|
| Monosaccharide
Browser |
|
|
|
|
|
|
|
| SuperSweet |
|
|
|
|
|
|
|
|
| SWEET-DB |
|
|
|
|
|
|
|
|
|
| Nucleic
Acid Structure |
|
|
|
|
|
|
|
| 3DNALandscapes |
|
|
|
|
|
|
|
|
| Greglist |
|
|
|
|
|
|
|
|
|
| GRSDB |
|
|
|
|
|
|
|
|
|
| ITS2 |
|
|
|
|
|
|
|
|
|
| MeRNA |
|
|
|
|
|
|
|
|
|
| MINAS |
|
|
|
|
|
|
|
|
|
| NCIR -
Non-Canonical Interactions in RNA |
|
|
|
|
|
|
| NDB |
|
|
|
|
|
|
|
|
|
| NNDB |
|
|
|
|
|
|
|
|
|
| non-B DB |
|
|
|
|
|
|
|
|
|
| NTDB |
|
|
|
|
|
|
|
|
|
| QuadBase |
|
|
|
|
|
|
|
|
|
| Rfam |
|
|
|
|
|
|
|
|
|
| RNA CoSSMos |
|
|
|
|
|
|
|
|
| RNA FRABASE |
|
|
|
|
|
|
|
|
| RNA SSTRAND |
|
|
|
|
|
|
|
|
| RNAJunction |
|
|
|
|
|
|
|
|
| SARS-CoV RNA SSS |
|
|
|
|
|
|
|
|
| SCOR - Structural Classification
Of RNA |
|
|
|
|
|
|
| Vir-Mir db |
|
|
|
|
|
|
|
|
|
| Protein
Structure |
|
|
|
|
|
|
|
|
| 3D-Genomics |
|
|
|
|
|
|
|
|
| 3DID - 3D interacting
domains |
|
|
|
|
|
|
|
| ApoHoloDB |
|
|
|
|
|
|
|
|
| ArchDB |
|
|
|
|
|
|
|
|
|
| AS-ALPS |
|
|
|
|
|
|
|
|
|
| ASTRAL |
|
|
|
|
|
|
|
|
|
| AutoPSI |
|
|
|
|
|
|
|
|
|
| BANMOKI |
|
|
|
|
|
|
|
|
|
| BioMagResBank |
|
|
|
|
|
|
|
|
| BISC |
|
|
|
|
|
|
|
|
|
| Brix |
|
|
|
|
|
|
|
|
|
| BSDB |
|
|
|
|
|
|
|
|
|
| CADB -
Conformational Angles DataBase of Proteins |
|
|
|
|
|
| CAPS-DB |
|
|
|
|
|
|
|
|
|
| CATH |
|
|
|
|
|
|
|
|
|
| CC+ |
|
|
|
|
|
|
|
|
|
| ccPDB |
|
|
|
|
|
|
|
|
|
| CDDB |
|
|
|
|
|
|
|
|
|
| CE |
|
|
|
|
|
|
|
|
|
| CoC Central |
|
|
|
|
|
|
|
|
| ColiSNP |
|
|
|
|
|
|
|
|
|
| Columba |
|
|
|
|
|
|
|
|
|
| ComSin |
|
|
|
|
|
|
|
|
|
| ConSurf-DB |
|
|
|
|
|
|
|
|
| CPDB |
|
|
|
|
|
|
|
|
|
| CSA
- Catalytic Site Atlas |
|
|
|
|
|
|
|
| Cube-DB |
|
|
|
|
|
|
|
|
|
| Dali
database |
|
|
|
|
|
|
|
|
| DARC |
|
|
|
|
|
|
|
|
|
| DBAli |
|
|
|
|
|
|
|
|
|
| Decoys-R-US |
|
|
|
|
|
|
|
|
| Disprot -
Database of protein disorder |
|
|
|
|
|
|
| DMAPS |
|
|
|
|
|
|
|
|
|
| Dockground |
|
|
|
|
|
|
|
|
| DomIns - Database of Domain
Insertions |
|
|
|
|
|
|
| DOMMINO |
|
|
|
|
|
|
|
|
| DSDBASE |
|
|
|
|
|
|
|
|
|
| DSMM - a
database of Simulated Molecular Motions |
|
|
|
|
|
| eF-site
- Electrostatic surface of Functional site |
|
|
|
|
|
|
| EMDataBank |
|
|
|
|
|
|
|
|
| EzCatDB |
|
|
|
|
|
|
|
|
|
| FireDB |
|
|
|
|
|
|
|
|
|
| fPOP |
|
|
|
|
|
|
|
|
|
| FSN |
|
|
|
|
|
|
|
|
|
| Gene3D |
|
|
|
|
|
|
|
|
|
| Genomic
Threading Database |
|
|
|
|
|
|
|
| GTOP -
Genomes To Protein Structures |
|
|
|
|
|
|
| HOMSTRAD -
Homologous Structure Alignment Database |
|
|
|
|
|
| HotSprint |
|
|
|
|
|
|
|
|
|
| IDEAL |
|
|
|
|
|
|
|
|
|
| IEDB-3D |
|
|
|
|
|
|
|
|
|
| IMGT/3Dstructure-DB |
|
|
|
|
|
|
|
|
| IMOTdb |
|
|
|
|
|
|
|
|
|
| IndelFR |
|
|
|
|
|
|
|
|
|
| JAIL |
|
|
|
|
|
|
|
|
|
| Jenalib:
Jena Library of Biological Macromolecules |
|
|
|
|
|
| KineticDB |
|
|
|
|
|
|
|
|
|
| LPFC |
|
|
|
|
|
|
|
|
|
| MALISAM |
|
|
|
|
|
|
|
|
|
| MegaMotifbase |
|
|
|
|
|
|
|
|
| MMDB |
|
|
|
|
|
|
|
|
|
| ModBase |
|
|
|
|
|
|
|
|
|
| MolMovDB -
Database of Macromolecular Movements |
|
|
|
|
|
| NRG-CING |
|
|
|
|
|
|
|
|
|
| PASS2 |
|
|
|
|
|
|
|
|
|
| PCDB |
|
|
|
|
|
|
|
|
|
| PCDDB |
|
|
|
|
|
|
|
|
|
| PDB |
|
|
|
|
|
|
|
|
|
| PDB-REPRDB |
|
|
|
|
|
|
|
|
| PDBe |
|
|
|
|
|
|
|
|
|
| PDBj |
|
|
|
|
|
|
|
|
|
| PDBselect |
|
|
|
|
|
|
|
|
|
| PDBsum |
|
|
|
|
|
|
|
|
|
| PDB_TM |
|
|
|
|
|
|
|
|
|
| PFD - Protein Folding
Database |
|
|
|
|
|
|
|
| Phospho3D |
|
|
|
|
|
|
|
|
| PIDD |
|
|
|
|
|
|
|
|
|
| piSite |
|
|
|
|
|
|
|
|
|
| PMDB - Protein Model
Database |
|
|
|
|
|
|
|
| Pocketome |
|
|
|
|
|
|
|
|
| PoSSuM |
|
|
|
|
|
|
|
|
|
| ProSAS |
|
|
|
|
|
|
|
|
|
| ProtChemSI |
|
|
|
|
|
|
|
|
| PROTCOM |
|
|
|
|
|
|
|
|
|
| Protein Geometry
Database |
|
|
|
|
|
|
|
| PRTAD |
|
|
|
|
|
|
|
|
|
| PSCDB |
|
|
|
|
|
|
|
|
|
| PSI-SGKB |
|
|
|
|
|
|
|
|
|
| PTGL |
|
|
|
|
|
|
|
|
|
| RESID |
|
|
|
|
|
|
|
|
|
| RsiteDB |
|
|
|
|
|
|
|
|
|
| S4:
Structure-based Sequence Alignments of SCOP Superfamilies |
|
|
|
|
| SAHG |
|
|
|
|
|
|
|
|
|
| SCOP - Structural
Classification of Proteins |
|
|
|
|
|
|
| SCOPPI |
|
|
|
|
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|
| SISYPHUS |
|
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|
| SitesBase |
|
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|
|
| SNAPPI |
|
|
|
|
|
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|
|
| SPROUTS |
|
|
|
|
|
|
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|
|
| SSToSS -
Sequence-Structural Templates of Single-member Superfamilies |
|
|
|
| STAP
refinement of NMRdb |
|
|
|
|
|
|
|
| STINGreport |
|
|
|
|
|
|
|
|
| Structure Superposition
Database |
|
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|
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|
|
| SUPERFAMILY |
|
|
|
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|
|
| SURFACE |
|
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|
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|
|
| SWISS-MODEL
Repository |
|
|
|
|
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|
|
| TargetDB |
|
|
|
|
|
|
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|
|
| TMBETA-GENOME |
|
|
|
|
|
|
|
|
| TOPOFIT-DB |
|
|
|
|
|
|
|
|
| TOPS - Topology Of
Protein Structures |
|
|
|
|
|
|
| TOPSAN |
|
|
|
|
|
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|
|
| VIBERdb |
|
|
|
|
|
|
|
|
|
| Voronoia |
|
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|
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|
|
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|
|
| Genomics
Databases (non-vertebrate) |
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| MGD - Mouse Genome
Database |
|
|
|
|
|
|
|
| The Gene Indices |
|
|
|
|
|
|
|
|
| Genome
annotation terms, ontologies and nomenclature |
|
|
|
|
| BioThesaurus |
|
|
|
|
|
|
|
|
| BTO |
|
|
|
|
|
|
|
|
|
| FunSimMat |
|
|
|
|
|
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|
|
| GO - Gene Ontology |
|
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|
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|
|
| GONUTS |
|
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|
|
| GOPaD |
|
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|
|
| HGNC Database |
|
|
|
|
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|
|
| IGRhCellID |
|
|
|
|
|
|
|
|
| IUBMB Nomenclature
database |
|
|
|
|
|
|
|
| IUPAC Nomenclature
database |
|
|
|
|
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|
|
| IUPHAR-RD |
|
|
|
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|
|
| MetaBase |
|
|
|
|
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|
|
| MIRIAM Registry |
|
|
|
|
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|
|
| Plant Ontology database |
|
|
|
|
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|
|
| PRO |
|
|
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|
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|
|
| Protein Naming Utility |
|
|
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|
|
| SOURCE |
|
|
|
|
|
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|
|
| TreeBase |
|
|
|
|
|
|
|
|
|
| UniProtKB - Gene Ontology
Annotation |
|
|
|
|
|
|
| Taxonomy
and identification |
|
|
|
|
|
|
|
| GeneTrees |
|
|
|
|
|
|
|
|
|
| IDBD |
|
|
|
|
|
|
|
|
|
| MICdb - Database
of Prokaryotic Microsatellites |
|
|
|
|
|
| NCBI
Taxonomy |
|
|
|
|
|
|
|
|
| Ribosomal Database Project
(RDP-II) |
|
|
|
|
|
|
| RIDOM - Ribosomal Differentation
of Medical Microorganisms |
|
|
|
|
| RISSC - Ribosomal Internal
Spacer Sequence Collection |
|
|
|
|
|
| Selectrome |
|
|
|
|
|
|
|
|
| SILVA: a comprehensive
online resource for quality checked and aligned ribosomal RNA sequence data |
|
| SuperCAT |
|
|
|
|
|
|
|
|
|
| Tree of Life |
|
|
|
|
|
|
|
|
|
| General
genomics databases |
|
|
|
|
|
|
|
| Animal Genome Size
Database |
|
|
|
|
|
|
|
| BacMap |
|
|
|
|
|
|
|
|
|
| Biodefense
Proteomics Resource Center |
|
|
|
|
|
|
| CAMERA |
|
|
|
|
|
|
|
|
|
| COG - Clusters of
Orthologous Groups of proteins |
|
|
|
|
|
| CoGenT++ |
|
|
|
|
|
|
|
|
|
| DEG - Database of
Essential Genes |
|
|
|
|
|
|
|
| diArk |
|
|
|
|
|
|
|
|
|
| EBI Genomes |
|
|
|
|
|
|
|
|
| eggNOG |
|
|
|
|
|
|
|
|
|
| Entrez
Gene |
|
|
|
|
|
|
|
|
| Entrez
Genomes |
|
|
|
|
|
|
|
|
| EPGD |
|
|
|
|
|
|
|
|
|
| ERGO-Light |
|
|
|
|
|
|
|
|
| GenDiS |
|
|
|
|
|
|
|
|
|
| GeneNest |
|
|
|
|
|
|
|
|
|
| GenoList |
|
|
|
|
|
|
|
|
|
| Genome information broker |
|
|
|
|
|
|
|
| Genome Project Database |
|
|
|
|
|
|
|
| Genome Reviews |
|
|
|
|
|
|
|
|
| GOLD |
|
|
|
|
|
|
|
|
|
| GtRDB - Genomic tRNA
Database |
|
|
|
|
|
|
|
| HOINVGEN |
|
|
|
|
|
|
|
|
| Inparanoid |
|
|
|
|
|
|
|
|
| Integr8 (formerly
Proteome Analysis Database) |
|
|
|
|
|
| KaryotypeDB |
|
|
|
|
|
|
|
|
| KEGG - Kyoto Encyclopedia
of Genes and Genomes |
|
|
|
|
|
| MBGD - Microbial Genome
Database |
|
|
|
|
|
|
| MeGX |
|
|
|
|
|
|
|
|
|
| MetaCyc |
|
|
|
|
|
|
|
|
|
| Narcisse |
|
|
|
|
|
|
|
|
|
| NegProt - Negative
Proteome database |
|
|
|
|
|
|
| NMPDR - National Microbial
Pathogen Data Resource |
|
|
|
|
|
| OrthoMCL |
|
|
|
|
|
|
|
|
|
| ParameciumDB |
|
|
|
|
|
|
|
|
| PartiGeneDB |
|
|
|
|
|
|
|
|
| PEDANT |
|
|
|
|
|
|
|
|
|
| PEP: Predictions
for Entire Proteomes |
|
|
|
|
|
|
| PhylomeDB |
|
|
|
|
|
|
|
|
| PUMA2 |
|
|
|
|
|
|
|
|
|
| STRING |
|
|
|
|
|
|
|
|
|
| TDRtargets |
|
|
|
|
|
|
|
|
| The
Comprehensive Microbial Resource |
|
|
|
|
|
|
| The Gene Indices |
|
|
|
|
|
|
|
|
| TMBETA-GENOME |
|
|
|
|
|
|
|
|
| TransportDB |
|
|
|
|
|
|
|
|
| Viral
genome databases |
|
|
|
|
|
|
|
| CoVDB |
|
|
|
|
|
|
|
|
|
| DPVweb |
|
|
|
|
|
|
|
|
|
| euHCVdb |
|
|
|
|
|
|
|
|
|
| HCV Database |
|
|
|
|
|
|
|
|
| HCVDB - Hepatitis C Virus
Database |
|
|
|
|
|
|
| HeqSeq |
|
|
|
|
|
|
|
|
|
| HERVd - Human Endogenous
Retrovirus database |
|
|
|
|
|
| HFV database |
|
|
|
|
|
|
|
|
| HIV
Drug Resistance Database |
|
|
|
|
|
|
|
| HIV
Interactions database |
|
|
|
|
|
|
|
| HIV
Molecule Immunology Database |
|
|
|
|
|
|
| HIV RT and Protease
Sequence Database |
|
|
|
|
|
|
| HIV Sequence
Database |
|
|
|
|
|
|
|
| Influenza
Virus Resource |
|
|
|
|
|
|
|
| ISED |
|
|
|
|
|
|
|
|
|
| IVDB - Influenza Virus
Database |
|
|
|
|
|
|
|
| NCBI Viral Genomes |
|
|
|
|
|
|
|
|
| PhEVER |
|
|
|
|
|
|
|
|
|
| phiSITE |
|
|
|
|
|
|
|
|
|
| Poxvirus.org |
|
|
|
|
|
|
|
|
| RNA Virus
Database |
|
|
|
|
|
|
|
|
| SARS-CoV RNA SSS |
|
|
|
|
|
|
|
|
| Subviral RNA Database |
|
|
|
|
|
|
|
|
| T4-like genome database |
|
|
|
|
|
|
|
| The HIV
Positive Selection Mutation Database |
|
|
|
|
|
|
| VIDA |
|
|
|
|
|
|
|
|
|
| VIPERdb |
|
|
|
|
|
|
|
|
|
| ViPR |
|
|
|
|
|
|
|
|
|
| Viral Bioinformatics
Resource |
|
|
|
|
|
|
|
| ViralORFeome |
|
|
|
|
|
|
|
|
| ViralZone |
|
|
|
|
|
|
|
|
|
| VirGen |
|
|
|
|
|
|
|
|
|
| ViTa |
|
|
|
|
|
|
|
|
|
| Prokaryotic
genome databases |
|
|
|
|
|
|
|
| EchoBASE |
|
|
|
|
|
|
|
|
|
| ShiBase |
|
|
|
|
|
|
|
|
|
| AlterORF |
|
|
|
|
|
|
|
|
|
| ARDB |
|
|
|
|
|
|
|
|
|
| ASAP
- A Systematic Annotation Package |
|
|
|
|
|
|
| ATGC |
|
|
|
|
|
|
|
|
|
| BSORF - Bacillus subtilis
Open Reading Frames |
|
|
|
|
|
|
| BuchneraBase |
|
|
|
|
|
|
|
|
| BuG@Sbase |
|
|
|
|
|
|
|
|
| CCDB - The
CyberCell Database |
|
|
|
|
|
|
|
| CIDB - Chlamydia
Interactive Database |
|
|
|
|
|
|
| CMGSDB |
|
|
|
|
|
|
|
|
|
| coliBase |
|
|
|
|
|
|
|
|
|
| Colibri |
|
|
|
|
|
|
|
|
|
| Comparative
Genometrics |
|
|
|
|
|
|
|
| CoryneRegNet |
|
|
|
|
|
|
|
|
| CyanoBase |
|
|
|
|
|
|
|
|
|
| DBETH |
|
|
|
|
|
|
|
|
|
| DBTBS |
|
|
|
|
|
|
|
|
|
| DOOR |
|
|
|
|
|
|
|
|
|
| DPInteract |
|
|
|
|
|
|
|
|
| EcoCyc |
|
|
|
|
|
|
|
|
|
| EcoGene |
|
|
|
|
|
|
|
|
|
| EcoliWiki |
|
|
|
|
|
|
|
|
|
| Effective |
|
|
|
|
|
|
|
|
|
| EMGlib -
Enganced Mircrobial Genomes Library |
|
|
|
|
|
| Ensembl Genomes |
|
|
|
|
|
|
|
|
| ERIC |
|
|
|
|
|
|
|
|
|
| Essential
genes in E. Coli |
|
|
|
|
|
|
|
| FusionDB |
|
|
|
|
|
|
|
|
|
| GeneDB |
|
|
|
|
|
|
|
|
|
| GenoBase |
|
|
|
|
|
|
|
|
|
| GenomeAtlas |
|
|
|
|
|
|
|
|
| GenProtEC |
|
|
|
|
|
|
|
|
| HAMAP |
|
|
|
|
|
|
|
|
|
| HEG-DB |
|
|
|
|
|
|
|
|
|
| HGT-DB, Horizontal Gene
Transfer-DataBase |
|
|
|
|
|
|
| ICEberg |
|
|
|
|
|
|
|
|
|
| IMG Genomes |
|
|
|
|
|
|
|
|
| IMG/M |
|
|
|
|
|
|
|
|
|
| Interrupted
coding sequences |
|
|
|
|
|
|
|
| Isfinder |
|
|
|
|
|
|
|
|
|
| Islander |
|
|
|
|
|
|
|
|
|
| LEGER |
|
|
|
|
|
|
|
|
|
| LeptoList |
|
|
|
|
|
|
|
|
|
| Metagrowth |
|
|
|
|
|
|
|
|
| MicrobesOnline |
|
|
|
|
|
|
|
|
| MolliGen |
|
|
|
|
|
|
|
|
|
| MtbRegList |
|
|
|
|
|
|
|
|
| MvirDB |
|
|
|
|
|
|
|
|
|
| NRSub |
|
|
|
|
|
|
|
|
|
| ODB - Operon database |
|
|
|
|
|
|
|
| OperonDB |
|
|
|
|
|
|
|
|
|
| PAIDB - Pathogenicity Island Database |
|
|
|
|
|
|
|
|
|
| PATRIC |
|
|
|
|
|
|
|
|
|
| PEC -
Profiling of E. Coli Chromosome |
|
|
|
|
|
|
| PGTdb - Prokaryotic
Growth Temperature database |
|
|
|
|
|
| PromEC |
|
|
|
|
|
|
|
|
|
| ProOpDB |
|
|
|
|
|
|
|
|
|
| ProPortal |
|
|
|
|
|
|
|
|
|
| ProTISA |
|
|
|
|
|
|
|
|
|
| Pseudomonas Genome
Database |
|
|
|
|
|
|
|
| PSSRdb |
|
|
|
|
|
|
|
|
|
| RegTransBase |
|
|
|
|
|
|
|
|
| RegulonDB |
|
|
|
|
|
|
|
|
| Roundup |
|
|
|
|
|
|
|
|
|
| RRNDB |
|
|
|
|
|
|
|
|
|
| RsGDB |
|
|
|
|
|
|
|
|
|
| SIDDBase |
|
|
|
|
|
|
|
|
|
| Strepto_DB |
|
|
|
|
|
|
|
|
| SubtiList |
|
|
|
|
|
|
|
|
|
| SubtiWiki |
|
|
|
|
|
|
|
|
|
| Sulfolobus |
|
|
|
|
|
|
|
|
|
| SYSTOMONAS |
|
|
|
|
|
|
|
|
| TADB |
|
|
|
|
|
|
|
|
|
| TBDB |
|
|
|
|
|
|
|
|
|
| UCSC Archaeal Genome Browser |
|
|
|
|
|
|
|
| VFDB - Virulence Factors
Database |
|
|
|
|
|
|
|
| VNTR Locus Database |
|
|
|
|
|
|
|
|
| xanthusBase |
|
|
|
|
|
|
|
|
| Unicellular
eukaryotes genome database |
|
|
|
|
|
|
| AmoebaDB |
|
|
|
|
|
|
|
|
| ApiDB - Apicomplexan
DataBase |
|
|
|
|
|
|
|
| ApiDots |
|
|
|
|
|
|
|
|
|
| Aspergillus
Genomes |
|
|
|
|
|
|
|
|
| Comparasite |
|
|
|
|
|
|
|
|
| CryptoDB - Cryptosporidium
database |
|
|
|
|
|
|
| Diatom EST
Database |
|
|
|
|
|
|
|
|
| DictyBase |
|
|
|
|
|
|
|
|
|
| Ensembl Genomes |
|
|
|
|
|
|
|
|
| Full-Parasites |
|
|
|
|
|
|
|
|
| GeneDB |
|
|
|
|
|
|
|
|
|
| GiardiaDB.org |
|
|
|
|
|
|
|
|
| metaTIGER |
|
|
|
|
|
|
|
|
| MicrosporidiaDB |
|
|
|
|
|
|
|
|
| PlasmoDB |
|
|
|
|
|
|
|
|
|
| ProtozoaDB |
|
|
|
|
|
|
|
|
| TBestDB |
|
|
|
|
|
|
|
|
|
| TcruziDB |
|
|
|
|
|
|
|
|
|
| TcSNP |
|
|
|
|
|
|
|
|
|
| TGD - Tetrahymena Genome
Database |
|
|
|
|
|
|
| ToxoDB - The Toxoplasma gondii
Genome Database |
|
|
|
|
|
| U-genome |
|
|
|
|
|
|
|
|
|
| Fungal
genome databases |
|
|
|
|
|
|
|
| Manganaporthe grisea Database |
|
|
|
|
|
|
|
| AGD - Ashbya Genome Database |
|
|
|
|
|
|
|
| AspGD |
|
|
|
|
|
|
|
|
|
| CADRE - Central
Aspergillus Data Repository |
|
|
|
|
|
|
| Candida Genome Database |
|
|
|
|
|
|
|
| CandidaDB |
|
|
|
|
|
|
|
|
| CFGP |
|
|
|
|
|
|
|
|
|
| COGEME Phytopathogenic Fungi
and Oomycete EST Database |
|
|
|
|
| CYGD -
Comprehensive Yeast Genome Database |
|
|
|
|
|
| Esembl Genomes |
|
|
|
|
|
|
|
|
| FGDB |
|
|
|
|
|
|
|
|
|
| Fungal Genome
Size Database |
|
|
|
|
|
|
|
| FungiDB |
|
|
|
|
|
|
|
|
|
| FusariumDB |
|
|
|
|
|
|
|
|
| Genolevures |
|
|
|
|
|
|
|
|
| GermOnline |
|
|
|
|
|
|
|
|
| MNCDB |
|
|
|
|
|
|
|
|
|
| Mpact |
|
|
|
|
|
|
|
|
|
| OGD - Oomycete Genomics
Database |
|
|
|
|
|
|
| OriDB - The DNA Replication
Origin Database |
|
|
|
|
|
|
| PhenoM |
|
|
|
|
|
|
|
|
|
| PHI-base |
|
|
|
|
|
|
|
|
|
| PomBase |
|
|
|
|
|
|
|
|
|
| PROPHECY |
|
|
|
|
|
|
|
|
|
| SCMD - Saccharomyces
cerevisiae Morphological Database |
|
|
|
|
| SCPD - Saccharomyces
cerevisiae promoter database |
|
|
|
|
|
| SGD - Saccharomyces
Genome Database |
|
|
|
|
|
|
| TRIPLES |
|
|
|
|
|
|
|
|
|
| VBI Microbial Database |
|
|
|
|
|
|
|
| YDPM
- Yeast Deletion Project |
|
|
|
|
|
|
|
| Yeast Intron Database |
|
|
|
|
|
|
|
|
| Yeast Resource Center |
|
|
|
|
|
|
|
|
| Yeast snoRNA Database |
|
|
|
|
|
|
|
| YEASTRACT |
|
|
|
|
|
|
|
|
| YGOB |
|
|
|
|
|
|
|
|
|
| yMGV - Yeast
microarray global viewer |
|
|
|
|
|
|
| YMPD |
|
|
|
|
|
|
|
|
|
| YPA |
|
|
|
|
|
|
|
|
|
| Invertebrate
genome databases |
|
|
|
|
|
|
|
| Drosophila microarray
centre |
|
|
|
|
|
|
|
| ACeDB |
|
|
|
|
|
|
|
|
|
| AphidBase |
|
|
|
|
|
|
|
|
|
| AppaDB |
|
|
|
|
|
|
|
|
|
| ArachnoServer |
|
|
|
|
|
|
|
|
| BeetleBase |
|
|
|
|
|
|
|
|
|
| ButterflyBase |
|
|
|
|
|
|
|
|
| C.
Elegans Project |
|
|
|
|
|
|
|
|
| CIPRO |
|
|
|
|
|
|
|
|
|
| CnidBase |
|
|
|
|
|
|
|
|
|
| Comparasite |
|
|
|
|
|
|
|
|
| CuticleDB |
|
|
|
|
|
|
|
|
|
| Drosophila polymorphism database |
|
|
|
|
|
|
| DroSpeGe |
|
|
|
|
|
|
|
|
|
| Ensembl Genomes |
|
|
|
|
|
|
|
|
| FLIGHT |
|
|
|
|
|
|
|
|
|
| FlyBase |
|
|
|
|
|
|
|
|
|
| FlyBrain |
|
|
|
|
|
|
|
|
|
| FlyEx |
|
|
|
|
|
|
|
|
|
| FlyMine |
|
|
|
|
|
|
|
|
|
| FlyRNAi |
|
|
|
|
|
|
|
|
|
| FLYSNP |
|
|
|
|
|
|
|
|
|
| FlyTF |
|
|
|
|
|
|
|
|
|
| FlyTrap |
|
|
|
|
|
|
|
|
|
| FlyView |
|
|
|
|
|
|
|
|
|
| GadFly |
|
|
|
|
|
|
|
|
|
| GeniSys |
|
|
|
|
|
|
|
|
|
| GenomeRNAi |
|
|
|
|
|
|
|
|
| HOINVGEN |
|
|
|
|
|
|
|
|
| Homophila |
|
|
|
|
|
|
|
|
| Hymenoptera Genome |
|
|
|
|
|
|
|
| InSatDb |
|
|
|
|
|
|
|
|
|
| InterActive
Fly |
|
|
|
|
|
|
|
|
| Intronerator |
|
|
|
|
|
|
|
|
| KinG: Kinases in
Genomes |
|
|
|
|
|
|
|
| LumbriBASE |
|
|
|
|
|
|
|
|
| MapViewer |
|
|
|
|
|
|
|
|
| MitoDrome |
|
|
|
|
|
|
|
|
| Nematode.net |
|
|
|
|
|
|
|
|
| Nematodes.org |
|
|
|
|
|
|
|
|
| NEMBASE |
|
|
|
|
|
|
|
|
|
| PPNEMA |
|
|
|
|
|
|
|
|
|
| Pristionchus.org |
|
|
|
|
|
|
|
|
| REDfly |
|
|
|
|
|
|
|
|
|
| RNAiDB |
|
|
|
|
|
|
|
|
|
| SchistoDB |
|
|
|
|
|
|
|
|
|
| Sebida |
|
|
|
|
|
|
|
|
|
| SilkDB |
|
|
|
|
|
|
|
|
|
| SilkSatDb |
|
|
|
|
|
|
|
|
|
| SmedGD |
|
|
|
|
|
|
|
|
|
| SpodoBase |
|
|
|
|
|
|
|
|
| StellaBase |
|
|
|
|
|
|
|
|
|
| TriTrypDB |
|
|
|
|
|
|
|
|
|
| UTRome |
|
|
|
|
|
|
|
|
|
| VectorBase |
|
|
|
|
|
|
|
|
| wFleaBase |
|
|
|
|
|
|
|
|
|
| WorfDB - Worm ORF
Database |
|
|
|
|
|
|
|
| WormBase |
|
|
|
|
|
|
|
|
| WormBook |
|
|
|
|
|
|
|
|
|
| Metabolic
and Signaling Pathways |
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ChemProt |
|
|
|
|
|
|
|
|
|
| Enzymes
and enzyme nomenclature |
|
|
|
|
|
|
| Allosteric Database |
|
|
|
|
|
|
|
|
| BindningDB |
|
|
|
|
|
|
|
|
| BRENDA |
|
|
|
|
|
|
|
|
|
| ENZYME |
|
|
|
|
|
|
|
|
|
| Enzyme
Nomenclature |
|
|
|
|
|
|
|
|
| eQuilibrator |
|
|
|
|
|
|
|
|
| ExplorEnz |
|
|
|
|
|
|
|
|
|
| FCP |
|
|
|
|
|
|
|
|
|
| FunTree |
|
|
|
|
|
|
|
|
|
| IntEnz |
|
|
|
|
|
|
|
|
|
| MACiE |
|
|
|
|
|
|
|
|
|
| MetaBioME |
|
|
|
|
|
|
|
|
| ORENZA |
|
|
|
|
|
|
|
|
|
| PRECISE |
|
|
|
|
|
|
|
|
|
| PROCOGNATE |
|
|
|
|
|
|
|
|
| SABIO-RK |
|
|
|
|
|
|
|
|
|
| SCOPEC |
|
|
|
|
|
|
|
|
|
| TECRdb |
|
|
|
|
|
|
|
|
|
| Metabolic
pathways |
|
|
|
|
|
|
|
|
| BioCarta |
|
|
|
|
|
|
|
|
|
| BioCyc |
|
|
|
|
|
|
|
|
|
| Bionemo |
|
|
|
|
|
|
|
|
|
| BioSilico |
|
|
|
|
|
|
|
|
|
| BRITE - Biomolecular
Relations in Information Transmission and Expression |
|
|
|
| BSD - Biodegradative Strain
Database |
|
|
|
|
|
|
| hiPathDB |
|
|
|
|
|
|
|
|
|
| HMDB |
|
|
|
|
|
|
|
|
|
| HMDB - The Human Metabolome
Database |
|
|
|
|
|
|
| iPAVS |
|
|
|
|
|
|
|
|
|
| KaPPA-View |
|
|
|
|
|
|
|
|
| KEGG - Kyoto Encyclopedia
of Genes and Genomes |
|
|
|
|
|
| Klotho |
|
|
|
|
|
|
|
|
|
| LIGAND |
|
|
|
|
|
|
|
|
|
| MedicCyc |
|
|
|
|
|
|
|
|
|
| MetaCrop |
|
|
|
|
|
|
|
|
|
| MetaCyc |
|
|
|
|
|
|
|
|
|
| Metagrowth |
|
|
|
|
|
|
|
|
| MMCD |
|
|
|
|
|
|
|
|
|
| MMMDB |
|
|
|
|
|
|
|
|
|
| MODOMICS |
|
|
|
|
|
|
|
|
| NMPDR - National Microbial
Pathogen Data Resource |
|
|
|
|
|
| Pathguide |
|
|
|
|
|
|
|
|
|
| Pathway Commons |
|
|
|
|
|
|
|
|
| PMAP |
|
|
|
|
|
|
|
|
|
| PUMPA2 |
|
|
|
|
|
|
|
|
|
| Rhea |
|
|
|
|
|
|
|
|
|
| SMPDB |
|
|
|
|
|
|
|
|
|
| SYSTOMONAS |
|
|
|
|
|
|
|
|
| UM-BBD |
|
|
|
|
|
|
|
|
|
| UniPathway |
|
|
|
|
|
|
|
|
| WikiPathways |
|
|
|
|
|
|
|
|
| YMDB |
|
|
|
|
|
|
|
|
|
| Protein-Protein
interactions |
|
|
|
|
|
|
|
| 3D-Interologs |
|
|
|
|
|
|
|
|
| AffinDB |
|
|
|
|
|
|
|
|
|
| aMAZE |
|
|
|
|
|
|
|
|
|
| Argonaute |
|
|
|
|
|
|
|
|
|
| AtPID |
|
|
|
|
|
|
|
|
|
| Bacteriome.org |
|
|
|
|
|
|
|
|
| Binding MOAD |
|
|
|
|
|
|
|
|
| BioCarta |
|
|
|
|
|
|
|
|
|
| BioGRID |
|
|
|
|
|
|
|
|
|
| BISC |
|
|
|
|
|
|
|
|
|
| CellCircuits |
|
|
|
|
|
|
|
|
| ConsensusPathDB |
|
|
|
|
|
|
|
|
| CORUM |
|
|
|
|
|
|
|
|
|
| CutDB |
|
|
|
|
|
|
|
|
|
| Cyclonet |
|
|
|
|
|
|
|
|
|
| DDIB - Database of
Domain Interactions and Binding |
|
|
|
|
|
| DIMA |
|
|
|
|
|
|
|
|
|
| DIP - Database of
Interacting Proteins |
|
|
|
|
|
|
| Dockground |
|
|
|
|
|
|
|
|
| DOMINE |
|
|
|
|
|
|
|
|
|
| DOMINO |
|
|
|
|
|
|
|
|
|
| DRC - Database of Ribosomal Crosslinks |
|
|
|
|
|
|
| DroID - Drosophila
Interactions Database |
|
|
|
|
|
|
| DRYGin |
|
|
|
|
|
|
|
|
|
| Dynamic
Proteomics |
|
|
|
|
|
|
|
|
| EciD |
|
|
|
|
|
|
|
|
|
| EndoNet |
|
|
|
|
|
|
|
|
|
| FunCoup |
|
|
|
|
|
|
|
|
|
| GeneNet |
|
|
|
|
|
|
|
|
|
| GLIDA |
|
|
|
|
|
|
|
|
|
| GWIDD |
|
|
|
|
|
|
|
|
|
| Hedgehog signalling |
|
|
|
|
|
|
|
|
| Het-PDB Navi |
|
|
|
|
|
|
|
|
| HitPredict |
|
|
|
|
|
|
|
|
|
| HotRegion |
|
|
|
|
|
|
|
|
|
| HotSprint |
|
|
|
|
|
|
|
|
|
| hp-DPI |
|
|
|
|
|
|
|
|
|
| HPID - Human Protein Interaction
database |
|
|
|
|
|
|
| I2D - Interologous
Interaction Database |
|
|
|
|
|
|
| IBIS |
|
|
|
|
|
|
|
|
|
| IMOTdb |
|
|
|
|
|
|
|
|
|
| IntAct |
|
|
|
|
|
|
|
|
|
| Inter-Chain Beta-Sheets |
|
|
|
|
|
|
|
| InterDom |
|
|
|
|
|
|
|
|
|
| InterEvol |
|
|
|
|
|
|
|
|
|
| Isobase |
|
|
|
|
|
|
|
|
|
| KDBI |
|
|
|
|
|
|
|
|
|
| KUPS |
|
|
|
|
|
|
|
|
|
| LigAsite |
|
|
|
|
|
|
|
|
|
| MatrixDB |
|
|
|
|
|
|
|
|
|
| MiMI |
|
|
|
|
|
|
|
|
|
| MiMI - Michigan
Molecular Interactions |
|
|
|
|
|
|
| MINT |
|
|
|
|
|
|
|
|
|
| MiST - Microbial
Signal Transduction database |
|
|
|
|
|
|
| Mpact |
|
|
|
|
|
|
|
|
|
| MPID-T |
|
|
|
|
|
|
|
|
|
| NCBI
BioSystems |
|
|
|
|
|
|
|
|
| Negatome |
|
|
|
|
|
|
|
|
|
| NetworKIN |
|
|
|
|
|
|
|
|
| NPInter |
|
|
|
|
|
|
|
|
|
| PAIR |
|
|
|
|
|
|
|
|
|
| PANTHER |
|
|
|
|
|
|
|
|
|
| Pathguide |
|
|
|
|
|
|
|
|
|
| PathoPlant |
|
|
|
|
|
|
|
|
| PCRPi-DB |
|
|
|
|
|
|
|
|
|
| PDZBase |
|
|
|
|
|
|
|
|
|
| PepCyber:P~Pep |
|
|
|
|
|
|
|
|
| PepX |
|
|
|
|
|
|
|
|
|
| PIG - Pathogen Interaction
Gateway |
|
|
|
|
|
|
| PINA |
|
|
|
|
|
|
|
|
|
| PINdb |
|
|
|
|
|
|
|
|
|
| PINT |
|
|
|
|
|
|
|
|
|
| PIPs |
|
|
|
|
|
|
|
|
|
| POINT |
|
|
|
|
|
|
|
|
|
| Predictive Networks |
|
|
|
|
|
|
|
|
| PRODORIC |
|
|
|
|
|
|
|
|
|
| ProNIT |
|
|
|
|
|
|
|
|
|
| ProtCID |
|
|
|
|
|
|
|
|
|
| PROTCOM |
|
|
|
|
|
|
|
|
|
| Protein kinase
resource |
|
|
|
|
|
|
|
| Protein-Protein interfaces |
|
|
|
|
|
|
|
| PRRDB |
|
|
|
|
|
|
|
|
|
| PSIbase |
|
|
|
|
|
|
|
|
|
| pSTIING |
|
|
|
|
|
|
|
|
|
| Reactome |
|
|
|
|
|
|
|
|
|
| ROSPath |
|
|
|
|
|
|
|
|
|
| SCOPPI |
|
|
|
|
|
|
|
|
|
| SENTRA |
|
|
|
|
|
|
|
|
|
| SMART |
|
|
|
|
|
|
|
|
|
| STCDB
- Signal Transduction Classification Database |
|
|
|
|
|
| STITCH |
|
|
|
|
|
|
|
|
|
| The Cell Cycle DB |
|
|
|
|
|
|
|
|
| TRANSPATH |
|
|
|
|
|
|
|
|
| TRIP |
|
|
|
|
|
|
|
|
|
| UniHI |
|
|
|
|
|
|
|
|
|
| VirHostNet |
|
|
|
|
|
|
|
|
| VirusMINT |
|
|
|
|
|
|
|
|
|
| Wnt Database |
|
|
|
|
|
|
|
|
| Signalling
Pathways |
|
|
|
|
|
|
|
|
| IUPHAR-DB |
|
|
|
|
|
|
|
|
| NetworKIN |
|
|
|
|
|
|
|
|
| P2CS |
|
|
|
|
|
|
|
|
|
| PepCyber:P~Pep |
|
|
|
|
|
|
|
|
| PhosPhAt |
|
|
|
|
|
|
|
|
|
| PID |
|
|
|
|
|
|
|
|
|
| PRRDB |
|
|
|
|
|
|
|
|
|
| RegPhos |
|
|
|
|
|
|
|
|
|
| REPAIRtoire |
|
|
|
|
|
|
|
|
| SPIKE |
|
|
|
|
|
|
|
|
|
| UCSD-Nature
Signaling Gateway Molecule Pages |
|
|
|
|
|
|
| Microarray
Data and other Gene Expression Databases |
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| 4DXpress |
|
|
|
|
|
|
|
|
|
| 5«SAGE |
|
|
|
|
|
|
|
|
|
| Drosophila microarray
centre |
|
|
|
|
|
|
|
| ABA -
Ascidian Body Atlas |
|
|
|
|
|
|
|
| ArrayExpress |
|
|
|
|
|
|
|
|
| Axeldb |
|
|
|
|
|
|
|
|
|
| BarleyBase |
|
|
|
|
|
|
|
|
|
| Beta Cell Genomics |
|
|
|
|
|
|
|
|
| BGED - Brain
Gene Expression Database |
|
|
|
|
|
|
| BloodExpress |
|
|
|
|
|
|
|
|
| BodyMap |
|
|
|
|
|
|
|
|
|
| BodyMap-Xs |
|
|
|
|
|
|
|
|
| CAGE |
|
|
|
|
|
|
|
|
|
| CATMA - Complete Arabidopsis
Transcriptome MicroArray |
|
|
|
|
|
| CEBS |
|
|
|
|
|
|
|
|
|
| CGED - Cancer Gene
Expression Database |
|
|
|
|
|
|
| CleanEx |
|
|
|
|
|
|
|
|
|
| CycleBase |
|
|
|
|
|
|
|
|
|
| dbERGEII |
|
|
|
|
|
|
|
|
|
| Edinburgh
Mouse (EMAP) Atlas |
|
|
|
|
|
|
|
| EMAGE |
|
|
|
|
|
|
|
|
|
| EpoDB -
Erythropoiesis Database |
|
|
|
|
|
|
|
| FLIGHT |
|
|
|
|
|
|
|
|
|
| FlyTED |
|
|
|
|
|
|
|
|
|
| GEISHA |
|
|
|
|
|
|
|
|
|
| Gene Aging Nexus |
|
|
|
|
|
|
|
|
| Gene Expression
Barcode |
|
|
|
|
|
|
|
| Gene Expression in Tooth
Database |
|
|
|
|
|
|
| GeneNote |
|
|
|
|
|
|
|
|
|
| GenePaint |
|
|
|
|
|
|
|
|
|
| GeneSigDB |
|
|
|
|
|
|
|
|
| GeneTide |
|
|
|
|
|
|
|
|
|
| GeneTrap |
|
|
|
|
|
|
|
|
|
| GeneWeaver |
|
|
|
|
|
|
|
|
| GENSAT |
|
|
|
|
|
|
|
|
|
| GEO - Gene
Expression Omnibus |
|
|
|
|
|
|
|
| GermOnline |
|
|
|
|
|
|
|
|
| GermSAGE |
|
|
|
|
|
|
|
|
|
| GPX-Macrophage |
|
|
|
|
|
|
|
|
| GXA |
|
|
|
|
|
|
|
|
|
| GXD -
Mouse Gene Expression Database |
|
|
|
|
|
|
| HemBase |
|
|
|
|
|
|
|
|
|
| HemoPDB
- Hematopoietic Promoter Database |
|
|
|
|
|
| HPMR - Human Plasma
Membrane Receptome |
|
|
|
|
|
|
| HugeIndex - Human Gene
Expression Index |
|
|
|
|
|
|
| Interferon
Stimulated Gene Database |
|
|
|
|
|
|
| International
Gene Trap Consortium Database |
|
|
|
|
|
|
| ITTACA |
|
|
|
|
|
|
|
|
|
| Kidney
Development Database |
|
|
|
|
|
|
|
| LOLA |
|
|
|
|
|
|
|
|
|
| M3D |
|
|
|
|
|
|
|
|
|
| MAGEST |
|
|
|
|
|
|
|
|
|
| MAMEP - Molecular Anatomy
of the Mouse Embryo Project |
|
|
|
|
| MEPD: A Medaka gene
expression pattern database |
|
|
|
|
|
| MitoGenesisDB |
|
|
|
|
|
|
|
|
| modMine |
|
|
|
|
|
|
|
|
|
| Mouse SAGE |
|
|
|
|
|
|
|
|
| NASCarrays |
|
|
|
|
|
|
|
|
| NetAffx |
|
|
|
|
|
|
|
|
|
| OncoMine |
|
|
|
|
|
|
|
|
|
| PEPR - Public
Expression Profiling Resource |
|
|
|
|
|
|
| PLANdbAffy |
|
|
|
|
|
|
|
|
| Prostate Expression Database |
|
|
|
|
|
|
|
| RecountDB |
|
|
|
|
|
|
|
|
| RefExA |
|
|
|
|
|
|
|
|
|
| rOGED |
|
|
|
|
|
|
|
|
|
| SAGEmap |
|
|
|
|
|
|
|
|
|
| Sebida |
|
|
|
|
|
|
|
|
|
| SEQanswers |
|
|
|
|
|
|
|
|
| SIEGE |
|
|
|
|
|
|
|
|
|
| SOURCE |
|
|
|
|
|
|
|
|
|
| Stanford Microarray Database |
|
|
|
|
|
|
|
| TMAD |
|
|
|
|
|
|
|
|
|
| TmaDB |
|
|
|
|
|
|
|
|
|
| TRANSFAC |
|
|
|
|
|
|
|
|
|
| TRIPLES |
|
|
|
|
|
|
|
|
|
| yMGV - Yeast
microarray global viewer |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Proteomics
Resources |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| 2D-PAGE |
|
|
|
|
|
|
|
|
|
| Aaindex |
|
|
|
|
|
|
|
|
|
| Biodefense
Proteomics Resource Center |
|
|
|
|
|
|
| BIOZON |
|
|
|
|
|
|
|
|
|
| CutDB |
|
|
|
|
|
|
|
|
|
| dbLEP |
|
|
|
|
|
|
|
|
|
| dbPTM |
|
|
|
|
|
|
|
|
|
| DynaProt 2D |
|
|
|
|
|
|
|
|
| GELBANK |
|
|
|
|
|
|
|
|
|
| MAPU |
|
|
|
|
|
|
|
|
|
| MOPED |
|
|
|
|
|
|
|
|
|
| Open
Proteomics Database |
|
|
|
|
|
|
|
| PEP: Perdictions
for Entire Proteomes |
|
|
|
|
|
|
| PepSeeker |
|
|
|
|
|
|
|
|
|
| PeptideAtlas |
|
|
|
|
|
|
|
|
| PlantMarkers |
|
|
|
|
|
|
|
|
| PRIDE |
|
|
|
|
|
|
|
|
|
| RESID |
|
|
|
|
|
|
|
|
|
| SWISS-2DPAGE |
|
|
|
|
|
|
|
|
| Sys-BodyFluid |
|
|
|
|
|
|
|
|
| SysPIMP |
|
|
|
|
|
|
|
|
|
|
| Other
Molecular Biology Databases |
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| BioModels |
|
|
|
|
|
|
|
|
|
| BioNumbers |
|
|
|
|
|
|
|
|
| CycleBase |
|
|
|
|
|
|
|
|
|
| Deja vu |
|
|
|
|
|
|
|
|
|
| DNASU Plasmid Repository |
|
|
|
|
|
|
|
| GeMInA |
|
|
|
|
|
|
|
|
|
| HyperCLDB |
|
|
|
|
|
|
|
|
| MetaRouter |
|
|
|
|
|
|
|
|
| PubMed |
|
|
|
|
|
|
|
|
|
| ReplicationDomain
(alias ChromosomeDomain) |
|
|
|
|
|
| SCLD |
|
|
|
|
|
|
|
|
|
| StrainInfo.net Bioportal |
|
|
|
|
|
|
|
| The Cell Cycle DB |
|
|
|
|
|
|
|
|
| UK PubMed Central |
|
|
|
|
|
|
|
|
| University
of Pittsburgh Bioinformatics Resources Collection |
|
|
|
|
| WormBook |
|
|
|
|
|
|
|
|
| Drugs
and drug design |
|
|
|
|
|
|
|
|
| APD - Antimicrobial
Peptide Database |
|
|
|
|
|
|
| BACTIBASE |
|
|
|
|
|
|
|
|
|
| BioDrugScreen |
|
|
|
|
|
|
|
|
| BSD - Biodegradative Strain
Database |
|
|
|
|
|
|
| CAMP |
|
|
|
|
|
|
|
|
|
| CEBS |
|
|
|
|
|
|
|
|
|
| ChEMBL |
|
|
|
|
|
|
|
|
|
| DAMPD |
|
|
|
|
|
|
|
|
|
| DART -
Drug Adverse Reaction Targets |
|
|
|
|
|
|
| Defensins
Knowledgebase |
|
|
|
|
|
|
|
| DrugBank |
|
|
|
|
|
|
|
|
|
| GLIDA |
|
|
|
|
|
|
|
|
|
| Herb Ingredient Targets |
|
|
|
|
|
|
|
| HIV
Drug Resistance Database |
|
|
|
|
|
|
|
| HIV
Molecular Immunology Database |
|
|
|
|
|
|
| IUPHAR-RD |
|
|
|
|
|
|
|
|
| Peptaibol |
|
|
|
|
|
|
|
|
|
| PharmGED |
|
|
|
|
|
|
|
|
| PharmGKB |
|
|
|
|
|
|
|
|
| PROMISCUOUS |
|
|
|
|
|
|
|
|
| Scorpion |
|
|
|
|
|
|
|
|
|
| STITCH |
|
|
|
|
|
|
|
|
|
| SuperDrug |
|
|
|
|
|
|
|
|
|
| SuperNatural |
|
|
|
|
|
|
|
|
| SuperTarget |
|
|
|
|
|
|
|
|
| T3DB |
|
|
|
|
|
|
|
|
|
| TTD -
Therapeutic Target Database |
|
|
|
|
|
|
|
| VIOLIN |
|
|
|
|
|
|
|
|
|
| ViPR |
|
|
|
|
|
|
|
|
|
| Molecular
probes and primers |
|
|
|
|
|
|
|
| AOBase |
|
|
|
|
|
|
|
|
|
| Human OligoGenome
Resource |
|
|
|
|
|
|
|
| IMGT/PRIMER-DB |
|
|
|
|
|
|
|
|
| MPDB -
Molecular Probe Database |
|
|
|
|
|
|
|
| OligoArrayDb |
|
|
|
|
|
|
|
|
| Primer Studio |
|
|
|
|
|
|
|
|
| PrimerBank |
|
|
|
|
|
|
|
|
| probeBase |
|
|
|
|
|
|
|
|
|
| QPPD
- Quantitative PCR Primer Database |
|
|
|
|
|
|
| qPrimerDepot |
|
|
|
|
|
|
|
|
| RTPrimer DB |
|
|
|
|
|
|
|
|
| VirOligo |
|
|
|
|
|
|
|
|
|
|
| Organelle
databases |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Chloroplast Genome
Database |
|
|
|
|
|
|
|
| FUGOID |
|
|
|
|
|
|
|
|
|
| GOBASE |
|
|
|
|
|
|
|
|
|
| Organelle DB |
|
|
|
|
|
|
|
|
| Organelle genomes |
|
|
|
|
|
|
|
|
| PeroxisomeDB |
|
|
|
|
|
|
|
|
| Plant Organelles
Database |
|
|
|
|
|
|
|
| PLprot |
|
|
|
|
|
|
|
|
|
| Mitochondrial
genes and proteins |
|
|
|
|
|
|
| HMPD |
|
|
|
|
|
|
|
|
|
| HmtDB - Human
Mitochondrial DataBase |
|
|
|
|
|
|
| Human MtDB |
|
|
|
|
|
|
|
|
| HvrBase++ |
|
|
|
|
|
|
|
|
|
| MamMiBase |
|
|
|
|
|
|
|
|
| MitoDat |
|
|
|
|
|
|
|
|
|
| MitoDrome |
|
|
|
|
|
|
|
|
| MitoGenesisDB |
|
|
|
|
|
|
|
|
| MITOMAP |
|
|
|
|
|
|
|
|
|
| Mitome |
|
|
|
|
|
|
|
|
|
| MitoMiner |
|
|
|
|
|
|
|
|
| MITOP2 |
|
|
|
|
|
|
|
|
|
| MitoProteome |
|
|
|
|
|
|
|
|
| MitoRes |
|
|
|
|
|
|
|
|
|
| MitoZoa |
|
|
|
|
|
|
|
|
|
| MPIM - Mitochondrial Protein Import Machinery |
|
|
|
|
|
| OGRe - Organellar Genome
Retrieval |
|
|
|
|
|
|
| PLMItRNA |
|
|
|
|
|
|
|
|
|
| YDPM
- Yeast Deletion Project |
|
|
|
|
|
|
|
| YMPD |
|
|
|
|
|
|
|
|
|
|
| Plant
databases |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Chloroplast
Genome Database |
|
|
|
|
|
|
|
| General
plant databases |
|
|
|
|
|
|
|
| AgBase |
|
|
|
|
|
|
|
|
|
| autoSNPdb |
|
|
|
|
|
|
|
|
| BarleyBase |
|
|
|
|
|
|
|
|
|
| Cereal Small RNA
Database |
|
|
|
|
|
|
|
| CR-EST - Crop
ESTs |
|
|
|
|
|
|
|
|
| DRASTIC |
|
|
|
|
|
|
|
|
|
| FLAGdb++ |
|
|
|
|
|
|
|
|
|
| GEnoPlante-Info |
|
|
|
|
|
|
|
|
| GabiPD |
|
|
|
|
|
|
|
|
|
| GeneFarm |
|
|
|
|
|
|
|
|
|
| GrainGenes |
|
|
|
|
|
|
|
|
| Gramene |
|
|
|
|
|
|
|
|
|
| Leaf Senescence
Database |
|
|
|
|
|
|
|
| MetaCrop |
|
|
|
|
|
|
|
|
|
| MIPSPlantsDB |
|
|
|
|
|
|
|
|
| MPIM - Mitochondrial Protein Import Machinery |
|
|
|
|
|
| NIAS |
|
|
|
|
|
|
|
|
|
| P3DB |
|
|
|
|
|
|
|
|
|
| PathoPlant |
|
|
|
|
|
|
|
|
| PhytAMP |
|
|
|
|
|
|
|
|
|
| Phytome |
|
|
|
|
|
|
|
|
|
| PHYTOPROT |
|
|
|
|
|
|
|
|
| Phytozome |
|
|
|
|
|
|
|
|
| PLACE |
|
|
|
|
|
|
|
|
|
| Plants
DNA C-value database |
|
|
|
|
|
|
|
| Plant Genome Central |
|
|
|
|
|
|
|
|
| Plant MPSS |
|
|
|
|
|
|
|
|
| Plant Ontology database |
|
|
|
|
|
|
|
| Plant
repeat database |
|
|
|
|
|
|
|
|
| Plant snoRNA DB |
|
|
|
|
|
|
|
|
| Plant
Stress-Responsive Gene Catalog |
|
|
|
|
|
|
| PLANT-PIs |
|
|
|
|
|
|
|
|
|
| PlantCARE |
|
|
|
|
|
|
|
|
|
| PlantGDB |
|
|
|
|
|
|
|
|
|
| PlantNATsDB |
|
|
|
|
|
|
|
|
| PlantProm |
|
|
|
|
|
|
|
|
| PlantsP/PlantsT |
|
|
|
|
|
|
|
|
| PlantTFDB |
|
|
|
|
|
|
|
|
|
| PlantTribes |
|
|
|
|
|
|
|
|
| PLEXdb |
|
|
|
|
|
|
|
|
|
| PlnTFDB |
|
|
|
|
|
|
|
|
|
| PmiRKB |
|
|
|
|
|
|
|
|
|
| PMRD |
|
|
|
|
|
|
|
|
|
| POGs/PlantRBP |
|
|
|
|
|
|
|
|
| PPDB: Plant Promoter
Database |
|
|
|
|
|
|
|
| PPDB: Proteomics Database |
|
|
|
|
|
|
|
| PRGdb |
|
|
|
|
|
|
|
|
|
| SALAD |
|
|
|
|
|
|
|
|
|
| TAED - The
Adaptive Evolution Database |
|
|
|
|
|
|
| TIGR Plant Transcript
Assembly database |
|
|
|
|
|
|
| TropGENE DB |
|
|
|
|
|
|
|
|
| Uk CropNet |
|
|
|
|
|
|
|
|
| Arabidopsis
thaliana |
|
|
|
|
|
|
|
|
| AGNS - Arabidopsis
GeneNet supplementary |
|
|
|
|
|
|
| AGRIS -
Arabidopsis Gene Regulatory Information Server |
|
|
|
|
|
| Arabidopsis Hormone
Database |
|
|
|
|
|
|
|
| Arabidopsis Mitochondrial Protein Database |
|
|
|
|
|
|
| Arabidopsis MPSS |
|
|
|
|
|
|
|
|
| Arabidopsis Nucleolar Protein Database |
|
|
|
|
|
|
| ARAMEMNON |
|
|
|
|
|
|
|
|
| ARTADEdb |
|
|
|
|
|
|
|
|
|
| ASRP - Arabidopsis
Small RNA Project |
|
|
|
|
|
|
| AtGDB |
|
|
|
|
|
|
|
|
|
| AthaMap |
|
|
|
|
|
|
|
|
|
| AtPID |
|
|
|
|
|
|
|
|
|
| ATTED-II |
|
|
|
|
|
|
|
|
|
| CATdb |
|
|
|
|
|
|
|
|
|
| CATMA - Complete Arabidopsis
Transcriptome MicroArray |
|
|
|
|
|
| DATF |
|
|
|
|
|
|
|
|
|
| GABI-Kat SimpleSearch
database |
|
|
|
|
|
|
|
| GreenPhylDB |
|
|
|
|
|
|
|
|
| MAtDB2 |
|
|
|
|
|
|
|
|
|
| NASCarrays |
|
|
|
|
|
|
|
|
| PAIR |
|
|
|
|
|
|
|
|
|
| PhosPhAt |
|
|
|
|
|
|
|
|
|
| Plant Metabolomics |
|
|
|
|
|
|
|
|
| PlantQTL-GE |
|
|
|
|
|
|
|
|
| Plprot |
|
|
|
|
|
|
|
|
|
| RARGE - RIKEN Arabidopsis
Genome Encyclopedia |
|
|
|
|
|
| SeedGenes |
|
|
|
|
|
|
|
|
|
| SUBA |
|
|
|
|
|
|
|
|
|
| The Arabidopsis
Information Resource (TAIR) |
|
|
|
|
|
|
| Rice |
|
|
|
|
|
|
|
|
|
| Oryza
Tag Line |
|
|
|
|
|
|
|
|
| BGI-Rise - Bejing
Genomics Institute Rice Information System |
|
|
|
|
| DRTF |
|
|
|
|
|
|
|
|
|
| GreenPhylDB |
|
|
|
|
|
|
|
|
| IRIS -
International Rice Information System |
|
|
|
|
|
|
| MOsDB |
|
|
|
|
|
|
|
|
|
| OryGenesDB |
|
|
|
|
|
|
|
|
| Oryzabase |
|
|
|
|
|
|
|
|
|
| PlantQTL-GE |
|
|
|
|
|
|
|
|
| RAP-DB |
|
|
|
|
|
|
|
|
|
| RetrOryza |
|
|
|
|
|
|
|
|
|
| Rice
Annontation Database |
|
|
|
|
|
|
|
| Rice
Gene Thresher |
|
|
|
|
|
|
|
|
| Rice Mutant Database |
|
|
|
|
|
|
|
|
| Rice Pipeline |
|
|
|
|
|
|
|
|
| Rice
Proteome Database |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| RiceGAAS |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| RiceXPro |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| WhoGA |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Other
plants |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Medicago trunculata Database |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Brassica BASC |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Diatom EST
Database |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| ForestTreeDB |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Genome Database for Rosaceae |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Legume
Information System |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| LegumelIP |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| MaizeGDB |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| MedicCyc |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| NRESTdb |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| PANZEA |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| PoMaMo -
Potato Maps and More |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| SGMD |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Shanghai Rapeseed
Database |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| SolGenomics |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| SoyBase |
|
|
|
|
|
|
|
|
|
| SoyGD |
|
|
|
|
|
|
|
|
|
| TED - Tomato Expression
Database |
|
|
|
|
|
|
|
| TFGD |
|
|
|
|
|
|
|
|
|
| TIGR Maize database |
|
|
|
|
|
|
|
|
| TomatEST DB |
|
|
|
|
|
|
|
|
|
| Immunological
databases |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ALPSbase |
|
|
|
|
|
|
|
|
|
| AntigenDB |
|
|
|
|
|
|
|
|
|
| AntiJen |
|
|
|
|
|
|
|
|
|
| BCIpep |
|
|
|
|
|
|
|
|
|
| dbMHC |
|
|
|
|
|
|
|
|
|
| DIGIT |
|
|
|
|
|
|
|
|
|
| Epitome |
|
|
|
|
|
|
|
|
|
| FIMM |
|
|
|
|
|
|
|
|
|
| GPX-Macrophase |
|
|
|
|
|
|
|
|
| HaptenDB |
|
|
|
|
|
|
|
|
|
| HPTAA |
|
|
|
|
|
|
|
|
|
| IEDB-3D |
|
|
|
|
|
|
|
|
|
| IL2Rgbase |
|
|
|
|
|
|
|
|
|
| IMGT |
|
|
|
|
|
|
|
|
|
| IMGT/GENE-DB |
|
|
|
|
|
|
|
|
| IMGT/HLA |
|
|
|
|
|
|
|
|
|
| IMGT/LIGM-DB |
|
|
|
|
|
|
|
|
| Interferon
Stimulated Gene Database |
|
|
|
|
|
|
| IPD-ESTDAB |
|
|
|
|
|
|
|
|
| IPD-HPA - Human
Platelet Antigens |
|
|
|
|
|
|
| IPD-KIR - Killer-cell
Immunoglobulin-like Receptors |
|
|
|
|
|
| IPD-MHC |
|
|
|
|
|
|
|
|
|
| MHCBN |
|
|
|
|
|
|
|
|
|
| MHCPEP |
|
|
|
|
|
|
|
|
|
| MPID-T |
|
|
|
|
|
|
|
|
|
| MUGEN Mouse
Database |
|
|
|
|
|
|
|
| Protegen |
|
|
|
|
|
|
|
|
|
| SuperHapten |
|
|
|
|
|
|
|
|
| The Immune Epitope Gatabase
(IEDB) |
|
|
|
|
|
|
| TmaDB |
|
|
|
|
|
|
|
|
|
| VBASE2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Cell
biology |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| DNAtraffic |
|
|
|
|
|
|
|
|
|
| ExoCarta |
|
|
|
|
|
|
|
|
|
| MethylomeDB |
|
|
|
|
|
|
|
|
|
| Computer
Related Tools |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Bioinformatic
Programming Tools |
|
|
|
|
|
|
|
| Bioconductor |
|
|
|
|
|
|
|
|
| BioDAS |
|
|
|
|
|
|
|
|
|
| BioJava |
|
|
|
|
|
|
|
|
|
| BioMoby |
|
|
|
|
|
|
|
|
|
| BioPax |
|
|
|
|
|
|
|
|
|
| BioPerl |
|
|
|
|
|
|
|
|
|
| BioPerl course |
|
|
|
|
|
|
|
|
| BioPHP |
|
|
|
|
|
|
|
|
|
| BioPhyton |
|
|
|
|
|
|
|
|
|
| BioRuby |
|
|
|
|
|
|
|
|
|
| CCT |
|
|
|
|
|
|
|
|
|
| Esembl API |
|
|
|
|
|
|
|
|
| Human
Ageing Genomic Resource |
|
|
|
|
|
|
|
| Open Bioinformatics
Foundation |
|
|
|
|
|
|
|
| PyMOL |
|
|
|
|
|
|
|
|
|
| R |
|
|
|
|
|
|
|
|
|
| System Biology Markup Language
(SBML) |
|
|
|
|
|
|
| C/C++ |
|
|
|
|
|
|
|
|
|
| Cprogramming.com |
|
|
|
|
|
|
|
|
| NCBI C++ toolkit |
|
|
|
|
|
|
|
|
| Databases |
|
|
|
|
|
|
|
|
|
| BioDBcore |
|
|
|
|
|
|
|
|
|
| HMS-ICS |
|
|
|
|
|
|
|
|
|
| MOWServ |
|
|
|
|
|
|
|
|
|
| MySQL |
|
|
|
|
|
|
|
|
|
| PostgreSQL |
|
|
|
|
|
|
|
|
| TogoWS |
|
|
|
|
|
|
|
|
|
| Java |
|
|
|
|
|
|
|
|
|
| BioJava |
|
|
|
|
|
|
|
|
|
| java.sun.com |
|
|
|
|
|
|
|
|
| ONJava.com |
|
|
|
|
|
|
|
|
| The Java
Tutorial |
|
|
|
|
|
|
|
|
| Linux/Unix |
|
|
|
|
|
|
|
|
| Bio-Linux |
|
|
|
|
|
|
|
|
|
| BIOKNOPPIX |
|
|
|
|
|
|
|
|
| Knoppix |
|
|
|
|
|
|
|
|
|
| Linux DistroWatch |
|
|
|
|
|
|
|
|
| Linux Documentation Project |
|
|
|
|
|
|
|
| Linux Online |
|
|
|
|
|
|
|
|
| Linux.Com |
|
|
|
|
|
|
|
|
| The Linux Cookbook |
|
|
|
|
|
|
|
|
| UNIX
Tutorals for Beginners |
|
|
|
|
|
|
|
| Vlinux |
|
|
|
|
|
|
|
|
|
| Math
and statistic |
|
|
|
|
|
|
|
|
| BioConductor |
|
|
|
|
|
|
|
|
| EVA |
|
|
|
|
|
|
|
|
|
| EVAcon |
|
|
|
|
|
|
|
|
|
| IntScore |
|
|
|
|
|
|
|
|
|
| R |
|
|
|
|
|
|
|
|
|
| SAPS - Statistical
Analysis of Protein Sequences |
|
|
|
|
|
| Statistical
Notes in the British Medical Journal |
|
|
|
|
|
|
| Statistics.com |
|
|
|
|
|
|
|
|
| UCLA Statistical
Computing Portal |
|
|
|
|
|
|
|
| PERL |
|
|
|
|
|
|
|
|
|
| BioPerl |
|
|
|
|
|
|
|
|
|
| BioPerl Course |
|
|
|
|
|
|
|
|
| Perl Mongers |
|
|
|
|
|
|
|
|
| Perl Monks |
|
|
|
|
|
|
|
|
| Perl.com |
|
|
|
|
|
|
|
|
|
| PHP |
|
|
|
|
|
|
|
|
|
| BioPHP |
|
|
|
|
|
|
|
|
|
| Web
Development |
|
|
|
|
|
|
|
|
| Entrez Programming Utilities |
|
|
|
|
|
|
|
| w3c.org |
|
|
|
|
|
|
|
|
|
| Web
Services |
|
|
|
|
|
|
|
|
| BIND SOAP |
|
|
|
|
|
|
|
|
| BioBIKE |
|
|
|
|
|
|
|
|
|
| BioExtract |
|
|
|
|
|
|
|
|
|
| caBIO Web Services |
|
|
|
|
|
|
|
|
| Chinook |
|
|
|
|
|
|
|
|
|
| EBI Tools |
|
|
|
|
|
|
|
|
|
| EMBRACE Web Services |
|
|
|
|
|
|
|
| Gene3D |
|
|
|
|
|
|
|
|
|
| GeneCodis3 |
|
|
|
|
|
|
|
|
| IBWS: IST
Bioinformatics Web Services |
|
|
|
|
|
|
| MOWServ |
|
|
|
|
|
|
|
|
|
| Opal Web Services for Biomedical
Applications |
|
|
|
|
|
| SMAP-WS |
|
|
|
|
|
|
|
|
|
| Taverna |
|
|
|
|
|
|
|
|
|
| TogoWS |
|
|
|
|
|
|
|
|
|
| WebLab |
|
|
|
|
|
|
|
|
|
| WIWS |
|
|
|
|
|
|
|
|
|
| XML Central of
DDBJ |
|
|
|
|
|
|
|
|
| Workflows |
|
|
|
|
|
|
|
|
| BioExtract |
|
|
|
|
|
|
|
|
|
| Galaxy |
|
|
|
|
|
|
|
|
|
| MemPype |
|
|
|
|
|
|
|
|
|
| MOWServ |
|
|
|
|
|
|
|
|
|
| myExperiment |
|
|
|
|
|
|
|
|
| Pegasys:
workflow management for bioinformatics |
|
|
|
|
|
| PRI-CAT |
|
|
|
|
|
|
|
|
|
| TogoWS |
|
|
|
|
|
|
|
|
|
|
| DNA |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Annotations |
|
|
|
|
|
|
|
|
| agriGO |
|
|
|
|
|
|
|
|
|
| AnnotQTL |
|
|
|
|
|
|
|
|
|
| antiSMASH |
|
|
|
|
|
|
|
|
| Apollo Genome
Annotation and Curation Tool |
|
|
|
|
|
| Artemis |
|
|
|
|
|
|
|
|
|
| ASAP |
|
|
|
|
|
|
|
|
|
| Asterias |
|
|
|
|
|
|
|
|
|
| Babelomics |
|
|
|
|
|
|
|
|
| BASys |
|
|
|
|
|
|
|
|
|
| BeeSpace Navigator |
|
|
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|
| Bioinformatics
Toolkit |
|
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| BioPortal |
|
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|
|
| Bioverse |
|
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| Blast2GO |
|
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| CARGO |
|
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| DAVID
Bioinformatics Resources |
|
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|
|
| Dnannotator |
|
|
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|
|
| Ensembl Genome Browser |
|
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|
| ESTExplorer |
|
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| EUGENE'HOM |
|
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| FatiGOplus |
|
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| FeatureExtract |
|
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| g:Profiler |
|
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| Gendoo |
|
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| GeneCodis3 |
|
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| Gene
Trail |
|
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| GoGene |
|
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|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
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|
|
| INDELSCAN |
|
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|
| INTEGRALL |
|
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| Integrated Microbial Genomes
(IMG) |
|
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| InterProScan |
|
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| IslandPath |
|
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| KAAS |
|
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| KOBAS |
|
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| LTR-Finder |
|
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| MADAP |
|
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| MagicViewer |
|
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| MartView |
|
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| MiCheck |
|
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| MutDB |
|
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|
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|
|
| NCBI Influenza Virus Sequence Annotation Tool |
|
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|
|
| NCBI
Map Viewer |
|
|
|
|
|
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|
|
| Onto-Tools |
|
|
|
|
|
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|
|
| Ontology Lookup Service |
|
|
|
|
|
|
|
| ORegAnno |
|
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| PANDORA |
|
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| PANTHER Tools |
|
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| Pegasys:
workflow managment form bioinformatics |
|
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| PHAST |
|
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| PhenoHM |
|
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| Phyloscan |
|
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| RNAmmer |
|
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| RTAnalyzer |
|
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| Sequin |
|
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| SOBA:
Sequence Ontology Bioinformatics Analysis |
|
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| Sockeye |
|
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| TACT |
|
|
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| Taverna |
|
|
|
|
|
|
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|
|
| The Chromosome 7 Annotation
Project |
|
|
|
|
|
|
| TIGR Software Tools |
|
|
|
|
|
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|
|
| UCSC Human Genome Browser Gateway |
|
|
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|
|
| Ulysses |
|
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|
|
| VarioWatch |
|
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| WebGestalt |
|
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| WEGO |
|
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| Databases |
|
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|
|
| 3D-Footprint |
|
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|
| 3DNALandscapes |
|
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| ACLAME |
|
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| CADgene |
|
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| CCDB |
|
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| CellBase |
|
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| ChimerDB |
|
|
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| COSMIC |
|
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| DAnCER |
|
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|
| DBASS3 and DBASS5 |
|
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|
| dbCRID |
|
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| dbDNV |
|
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| dbSNP-Q |
|
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| DBTSS |
|
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| DDBJ |
|
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| DDPC |
|
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|
| DNASU Plasmid Repository |
|
|
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|
|
| DroID |
|
|
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|
|
| EBI patent
sequence database |
|
|
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|
|
| ENCODE DCC |
|
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|
|
| Esembl |
|
|
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|
|
| Entrez Gene |
|
|
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|
| European Nucleotide Archive |
|
|
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|
|
| Full-parasites |
|
|
|
|
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|
|
| GenBank |
|
|
|
|
|
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|
|
| GGRNA |
|
|
|
|
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|
| GOLD |
|
|
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|
|
|
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|
|
| GreenPhylDB v2.0 |
|
|
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|
| H-DBAS |
|
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| IGDD |
|
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| Isfinder |
|
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| ITS2 |
|
|
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|
|
| JASPAR |
|
|
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|
|
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|
|
| Mpromdb
update 2010 |
|
|
|
|
|
|
|
| NCBI
Epigenomics |
|
|
|
|
|
|
|
|
| NCBI Resources |
|
|
|
|
|
|
|
|
| NGSmethDB |
|
|
|
|
|
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|
|
| NNDB |
|
|
|
|
|
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|
|
| Non-B DB |
|
|
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|
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|
|
| ODB |
|
|
|
|
|
|
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|
|
| ORegAnno |
|
|
|
|
|
|
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|
|
| Patrocles |
|
|
|
|
|
|
|
|
|
| PhylomeDB v3.0 |
|
|
|
|
|
|
|
|
| PrimerBank |
|
|
|
|
|
|
|
|
| PSSRdb |
|
|
|
|
|
|
|
|
|
| Recode |
|
|
|
|
|
|
|
|
|
| SRA |
|
|
|
|
|
|
|
|
|
| The BioGRID Interaction
Database |
|
|
|
|
|
|
|
| The European Bioinformatics
Institute (EBI) |
|
|
|
|
|
|
| TIARA |
|
|
|
|
|
|
|
|
|
| UCSC Genome Browser |
|
|
|
|
|
|
|
| UTRdb/UTRsite |
|
|
|
|
|
|
|
|
| VKCDB |
|
|
|
|
|
|
|
|
|
| WebGeSTer DB |
|
|
|
|
|
|
|
|
| YPA |
|
|
|
|
|
|
|
|
|
| DNA
and Genomic Analysis |
|
|
|
|
|
|
|
| BCM Search
Launcher |
|
|
|
|
|
|
|
|
| BCM Search Launcher Sequence Utilities |
|
|
|
|
|
|
| BioExtract |
|
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| BiQ
Analyzer HT |
|
|
|
|
|
|
|
|
| BoxShade |
|
|
|
|
|
|
|
|
|
| Chinook |
|
|
|
|
|
|
|
|
|
| Cyber-T Webserver |
|
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| Galaxy |
|
|
|
|
|
|
|
|
|
| HGNC: HUGO Gene
Nomenclature Committee |
|
|
|
|
|
|
| Idiographica |
|
|
|
|
|
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|
|
| IMP |
|
|
|
|
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|
|
| NDB |
|
|
|
|
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|
|
| O-miner |
|
|
|
|
|
|
|
|
|
| OmicBrowse |
|
|
|
|
|
|
|
|
| Ontology Lookup Service |
|
|
|
|
|
|
|
| OSU
Bioinformatics and Computational Biology |
|
|
|
|
|
| pDRAW32 |
|
|
|
|
|
|
|
|
|
| PileLineGUI |
|
|
|
|
|
|
|
|
| PlasMapper |
|
|
|
|
|
|
|
|
| ReadSeq |
|
|
|
|
|
|
|
|
|
| RSAT |
|
|
|
|
|
|
|
|
|
| Savant Genome Browser 2 |
|
|
|
|
|
|
|
| SeWer |
|
|
|
|
|
|
|
|
|
| Software
for MacOSX at Mek&Tosj.com |
|
|
|
|
|
|
| The Sequence
Manipulation Suite 2 |
|
|
|
|
|
|
| Virtual
Ribosome |
|
|
|
|
|
|
|
|
| VisCoSe |
|
|
|
|
|
|
|
|
|
| WAViS |
|
|
|
|
|
|
|
|
|
| xREI |
|
|
|
|
|
|
|
|
|
| Gene
Prediction |
|
|
|
|
|
|
|
|
| AGenDA |
|
|
|
|
|
|
|
|
|
| AMIGene |
|
|
|
|
|
|
|
|
|
| AnnotQTL |
|
|
|
|
|
|
|
|
|
| AUGUSTUS |
|
|
|
|
|
|
|
|
| BAGEL |
|
|
|
|
|
|
|
|
|
| BAGEL2 |
|
|
|
|
|
|
|
|
|
| BLAST |
|
|
|
|
|
|
|
|
|
| CPC |
|
|
|
|
|
|
|
|
|
| EUGENE'HOM |
|
|
|
|
|
|
|
|
| FrameD |
|
|
|
|
|
|
|
|
|
| GeneFizz |
|
|
|
|
|
|
|
|
|
| GeneMark |
|
|
|
|
|
|
|
|
|
| GeneSeqer |
|
|
|
|
|
|
|
|
|
| GenomeScan |
|
|
|
|
|
|
|
|
| GENSCAN |
|
|
|
|
|
|
|
|
|
| Glimmer |
|
|
|
|
|
|
|
|
|
| Hhomp |
|
|
|
|
|
|
|
|
|
| HMMgene |
|
|
|
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| mGene.web |
|
|
|
|
|
|
|
|
| ORF Finder |
|
|
|
|
|
|
|
|
| Orphelia |
|
|
|
|
|
|
|
|
|
| TACT |
|
|
|
|
|
|
|
|
|
| Taverna |
|
|
|
|
|
|
|
|
|
| TICo |
|
|
|
|
|
|
|
|
|
| TIGR Software Tools |
|
|
|
|
|
|
|
|
| TRACTS |
|
|
|
|
|
|
|
|
|
| Twinscan |
|
|
|
|
|
|
|
|
|
| VIGOR |
|
|
|
|
|
|
|
|
|
| Virtual
Ribosome |
|
|
|
|
|
|
|
|
| xREI |
|
|
|
|
|
|
|
|
|
| Mapping
and Assembly |
|
|
|
|
|
|
|
| CAP3
Sequence Assembly Program |
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| Egassembler |
|
|
|
|
|
|
|
|
| Genome
Centres and Databases |
|
|
|
|
|
|
|
| Genome Database for Rosaceae |
|
|
|
|
|
|
|
| HapEdit |
|
|
|
|
|
|
|
|
|
| iCE
- internet Contig Explorer |
|
|
|
|
|
|
|
| MagicViewer |
|
|
|
|
|
|
|
|
| MGIP |
|
|
|
|
|
|
|
|
|
| NCBI Clone
Registry |
|
|
|
|
|
|
|
|
| Phred/Phrap/Consed
System |
|
|
|
|
|
|
|
| Projector
2 |
|
|
|
|
|
|
|
|
| PromoSer |
|
|
|
|
|
|
|
|
|
| TIGR Software Tools |
|
|
|
|
|
|
|
|
| TmPrime |
|
|
|
|
|
|
|
|
|
| WebPrlnSeS |
|
|
|
|
|
|
|
|
| Phylogeny
Reconstruction |
|
|
|
|
|
|
|
| Berkeley
Phylogenomics Group |
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| BLASTO |
|
|
|
|
|
|
|
|
|
| CIPRes |
|
|
|
|
|
|
|
|
|
| cpnDB |
|
|
|
|
|
|
|
|
|
| CRISPRcompar |
|
|
|
|
|
|
|
|
| EvolView |
|
|
|
|
|
|
|
|
|
| FastML |
|
|
|
|
|
|
|
|
|
| ITS2 |
|
|
|
|
|
|
|
|
|
| Joes Site - Phylogeny Programs |
|
|
|
|
|
|
|
| MaxAlign |
|
|
|
|
|
|
|
|
|
| MEGA |
|
|
|
|
|
|
|
|
|
| Mesquite |
|
|
|
|
|
|
|
|
|
| MIGenAS Toolkit |
|
|
|
|
|
|
|
|
| MIRU-VNTRplus |
|
|
|
|
|
|
|
|
| MLST |
|
|
|
|
|
|
|
|
|
| ModelTest
Sever |
|
|
|
|
|
|
|
|
| MPI Toolkit |
|
|
|
|
|
|
|
|
| MultiPhyl |
|
|
|
|
|
|
|
|
|
| NAST |
|
|
|
|
|
|
|
|
|
| NCBI Taxonomy
Database |
|
|
|
|
|
|
|
| NEWT |
|
|
|
|
|
|
|
|
|
| Njplot |
|
|
|
|
|
|
|
|
|
| Orthologue
Search Service |
|
|
|
|
|
|
|
| OrthoSelect |
|
|
|
|
|
|
|
|
| PAL2NAL |
|
|
|
|
|
|
|
|
|
| Phylemon |
|
|
|
|
|
|
|
|
|
| PHYLIP |
|
|
|
|
|
|
|
|
|
| PLecDom |
|
|
|
|
|
|
|
|
|
| POWER |
|
|
|
|
|
|
|
|
|
| Puzzleboot |
|
|
|
|
|
|
|
|
| Ribosomal Database Project |
|
|
|
|
|
|
|
| SATCHMO-JS |
|
|
|
|
|
|
|
|
| Selection |
|
|
|
|
|
|
|
|
|
| Signature |
|
|
|
|
|
|
|
|
|
| SPRING |
|
|
|
|
|
|
|
|
|
| SWAKK |
|
|
|
|
|
|
|
|
|
| T-COFFEE |
|
|
|
|
|
|
|
|
|
| T-REX |
|
|
|
|
|
|
|
|
|
| Tree
Editors |
|
|
|
|
|
|
|
|
| Tree of Life |
|
|
|
|
|
|
|
|
|
| TREE-PUZZLE |
|
|
|
|
|
|
|
|
| TreeDomViewer |
|
|
|
|
|
|
|
|
| TreeJuxtaposer |
|
|
|
|
|
|
|
|
| TreeView |
|
|
|
|
|
|
|
|
|
| UCMP
Phylogeny Wing |
|
|
|
|
|
|
|
| Understanding
Evolution |
|
|
|
|
|
|
|
| Virus
Genotyping Tools |
|
|
|
|
|
|
|
| Weighbor |
|
|
|
|
|
|
|
|
|
| Sequence
Polymorphisms |
|
|
|
|
|
|
|
| ARTS |
|
|
|
|
|
|
|
|
|
| AutoSNPdb |
|
|
|
|
|
|
|
|
| Cancer Genome Anatomy
Project |
|
|
|
|
|
|
|
| CARGO |
|
|
|
|
|
|
|
|
|
| dbSNP |
|
|
|
|
|
|
|
|
|
| DNA Methylation Database |
|
|
|
|
|
|
|
| FastSNP |
|
|
|
|
|
|
|
|
|
| g:Profiler |
|
|
|
|
|
|
|
|
|
| GEPAS |
|
|
|
|
|
|
|
|
|
| GVS |
|
|
|
|
|
|
|
|
|
| HGVbase |
|
|
|
|
|
|
|
|
|
| HomozygosityMapper |
|
|
|
|
|
|
|
|
| inGAP-sv |
|
|
|
|
|
|
|
|
|
| International
HapMap Project |
|
|
|
|
|
|
|
| IS
TECH SNPAnalyzer |
|
|
|
|
|
|
|
|
| KD4v |
|
|
|
|
|
|
|
|
|
| MagicViewer |
|
|
|
|
|
|
|
|
| MKT |
|
|
|
|
|
|
|
|
|
| MutDB |
|
|
|
|
|
|
|
|
|
| nsSNPAnalyzer |
|
|
|
|
|
|
|
|
| ORegAnno |
|
|
|
|
|
|
|
|
|
| PANTHER Tools |
|
|
|
|
|
|
|
|
| PARSESNP |
|
|
|
|
|
|
|
|
|
| PDA |
|
|
|
|
|
|
|
|
|
| PileLineGUI |
|
|
|
|
|
|
|
|
| PolyBayes |
|
|
|
|
|
|
|
|
|
| PolyPhred |
|
|
|
|
|
|
|
|
|
| PupaSuite |
|
|
|
|
|
|
|
|
|
| QuickSNP |
|
|
|
|
|
|
|
|
|
| QUMA |
|
|
|
|
|
|
|
|
|
| rSNP-Guide |
|
|
|
|
|
|
|
|
| SBT
Interface - dbMHC |
|
|
|
|
|
|
|
|
| SeqFIRE |
|
|
|
|
|
|
|
|
|
| SIFT |
|
|
|
|
|
|
|
|
|
| SNP
Cutter |
|
|
|
|
|
|
|
|
| SNP@Domain |
|
|
|
|
|
|
|
|
| SNPbox |
|
|
|
|
|
|
|
|
|
| SNPinfo |
|
|
|
|
|
|
|
|
|
| SNPmasker |
|
|
|
|
|
|
|
|
| SNPnexus |
|
|
|
|
|
|
|
|
|
| StSNP |
|
|
|
|
|
|
|
|
|
| SVMHC |
|
|
|
|
|
|
|
|
|
| The SNP Consortium |
|
|
|
|
|
|
|
|
| VARIANT |
|
|
|
|
|
|
|
|
|
| VarioWatch |
|
|
|
|
|
|
|
|
| waviCGH |
|
|
|
|
|
|
|
|
|
| WhETS |
|
|
|
|
|
|
|
|
|
| Sequence
Revrieval and Submission |
|
|
|
|
|
|
| AliasServer |
|
|
|
|
|
|
|
|
| BankIt |
|
|
|
|
|
|
|
|
|
| BioMart |
|
|
|
|
|
|
|
|
|
| BLAST |
|
|
|
|
|
|
|
|
|
| EBI Tools |
|
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| Entrez |
|
|
|
|
|
|
|
|
|
| FeatureExtract |
|
|
|
|
|
|
|
|
| GeConT
2 |
|
|
|
|
|
|
|
|
|
| Gene Set Builder |
|
|
|
|
|
|
|
|
| GenomeNet |
|
|
|
|
|
|
|
|
| HGNC: HUGO Gene
Nomenclature Committee |
|
|
|
|
|
|
| International Nucleotide
Sequence Database Collaboration |
|
|
|
|
| MartView |
|
|
|
|
|
|
|
|
|
| MIGenAS Toolkit |
|
|
|
|
|
|
|
|
| MRS |
|
|
|
|
|
|
|
|
|
| NCBI Human DNA
Reference Sequence |
|
|
|
|
|
|
| NCBI Influenza Virus Sequence Annotation Tool |
|
|
|
|
|
| PAZAR |
|
|
|
|
|
|
|
|
|
| PubCrawler |
|
|
|
|
|
|
|
|
| RSAT |
|
|
|
|
|
|
|
|
|
| SAKURA |
|
|
|
|
|
|
|
|
|
| Sequin |
|
|
|
|
|
|
|
|
|
| SOURCE |
|
|
|
|
|
|
|
|
|
| Swiss-Shop |
|
|
|
|
|
|
|
|
| The European Bioinformatics
Institute (EBI) |
|
|
|
|
|
|
| WhETS |
|
|
|
|
|
|
|
|
|
| YOGY |
|
|
|
|
|
|
|
|
|
| Structure
and sequence Feature Detection |
|
|
|
|
|
|
| 3D-DART |
|
|
|
|
|
|
|
|
|
| ALGGEN |
|
|
|
|
|
|
|
|
|
| AlignACE |
|
|
|
|
|
|
|
|
|
| ARGO |
|
|
|
|
|
|
|
|
|
| AUGUSTUS |
|
|
|
|
|
|
|
|
| BEARR |
|
|
|
|
|
|
|
|
|
| BioBayesNet |
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| BioMart |
|
|
|
|
|
|
|
|
|
| bioNMF |
|
|
|
|
|
|
|
|
|
| BioProspector |
|
|
|
|
|
|
|
|
| CEAS |
|
|
|
|
|
|
|
|
|
| CGVIEW
Server |
|
|
|
|
|
|
|
|
| Chinook |
|
|
|
|
|
|
|
|
|
| CisMols |
|
|
|
|
|
|
|
|
|
| cisRED |
|
|
|
|
|
|
|
|
|
| Cluster Buster |
|
|
|
|
|
|
|
|
| CMA |
|
|
|
|
|
|
|
|
|
| Codon Usage Database |
|
|
|
|
|
|
|
|
| CodonO |
|
|
|
|
|
|
|
|
|
| CompareProspector |
|
|
|
|
|
|
|
|
| CONREAL |
|
|
|
|
|
|
|
|
|
| Consite |
|
|
|
|
|
|
|
|
|
| ConTra |
|
|
|
|
|
|
|
|
|
| CorGen |
|
|
|
|
|
|
|
|
|
| CPC |
|
|
|
|
|
|
|
|
|
| CREME |
|
|
|
|
|
|
|
|
|
| CRISPRFinder |
|
|
|
|
|
|
|
|
| CRSD |
|
|
|
|
|
|
|
|
|
| CSTminer |
|
|
|
|
|
|
|
|
|
| CURVES+ |
|
|
|
|
|
|
|
|
|
| DBD2BS |
|
|
|
|
|
|
|
|
|
| DNABINDPROT |
|
|
|
|
|
|
|
|
| Drosophila Dnase I footprint
database |
|
|
|
|
|
|
| DSHIFT |
|
|
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| Eponine |
|
|
|
|
|
|
|
|
|
| ESTExplorer |
|
|
|
|
|
|
|
|
| FeatureScan |
|
|
|
|
|
|
|
|
| FirstEF |
|
|
|
|
|
|
|
|
|
| Footer |
|
|
|
|
|
|
|
|
|
| GC-Profile |
|
|
|
|
|
|
|
|
|
| GCUA: Graphical Codon Usage
Analyser |
|
|
|
|
|
|
| GenDecoder |
|
|
|
|
|
|
|
|
| Genome
TraFaC |
|
|
|
|
|
|
|
|
| Gibbs
Motif Sampler |
|
|
|
|
|
|
|
|
| HHomp |
|
|
|
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| ICM Web |
|
|
|
|
|
|
|
|
|
| iCR |
|
|
|
|
|
|
|
|
|
| INCLUSive |
|
|
|
|
|
|
|
|
|
| IslandPath |
|
|
|
|
|
|
|
|
|
| IsoFinder |
|
|
|
|
|
|
|
|
|
| JASPAR |
|
|
|
|
|
|
|
|
|
| Jcat |
|
|
|
|
|
|
|
|
|
| jPREdictor |
|
|
|
|
|
|
|
|
|
| KOSMOS |
|
|
|
|
|
|
|
|
|
| LowComplexity |
|
|
|
|
|
|
|
|
| LTR_Finder |
|
|
|
|
|
|
|
|
| MartView |
|
|
|
|
|
|
|
|
|
| Match |
|
|
|
|
|
|
|
|
|
| McPromoter |
|
|
|
|
|
|
|
|
| Mdscan |
|
|
|
|
|
|
|
|
|
| Melinall |
|
|
|
|
|
|
|
|
|
| MEME Suite |
|
|
|
|
|
|
|
|
| Meta-MEME |
|
|
|
|
|
|
|
|
| MicroFootPrinter |
|
|
|
|
|
|
|
|
| MoD Tools |
|
|
|
|
|
|
|
|
|
| MotifViz |
|
|
|
|
|
|
|
|
|
| MoViES |
|
|
|
|
|
|
|
|
|
| mreps |
|
|
|
|
|
|
|
|
|
| MYBS |
|
|
|
|
|
|
|
|
|
| NASSAM |
|
|
|
|
|
|
|
|
|
| NXSensor |
|
|
|
|
|
|
|
|
|
| Onto-Tools |
|
|
|
|
|
|
|
|
| oPOSSUM |
|
|
|
|
|
|
|
|
|
| OPTIMIZER |
|
|
|
|
|
|
|
|
| ORF Finder |
|
|
|
|
|
|
|
|
| OSU
Bioinformatics and Computational Biology |
|
|
|
|
|
| PAP |
|
|
|
|
|
|
|
|
|
| PatMatch |
|
|
|
|
|
|
|
|
|
| PAZAR |
|
|
|
|
|
|
|
|
|
| PHIRE |
|
|
|
|
|
|
|
|
|
| PlantTFDB |
|
|
|
|
|
|
|
|
|
| PLecDom |
|
|
|
|
|
|
|
|
|
| PlotRep |
|
|
|
|
|
|
|
|
|
| POBO |
|
|
|
|
|
|
|
|
|
| POCO |
|
|
|
|
|
|
|
|
|
| POXO |
|
|
|
|
|
|
|
|
|
| PredictRegulon |
|
|
|
|
|
|
|
|
| PromH |
|
|
|
|
|
|
|
|
|
| PromoSer |
|
|
|
|
|
|
|
|
|
| PromoterPlot |
|
|
|
|
|
|
|
|
| ProSplicer |
|
|
|
|
|
|
|
|
|
| QGRS
Mapper |
|
|
|
|
|
|
|
|
| QuadFinder |
|
|
|
|
|
|
|
|
| Quadruplex |
|
|
|
|
|
|
|
|
| ReadOut |
|
|
|
|
|
|
|
|
|
| RECON |
|
|
|
|
|
|
|
|
|
| REDUCE |
|
|
|
|
|
|
|
|
|
| RegAnalyst |
|
|
|
|
|
|
|
|
| RegPredict |
|
|
|
|
|
|
|
|
| RegRNA |
|
|
|
|
|
|
|
|
|
| RepeatMasker |
|
|
|
|
|
|
|
|
| REPRO |
|
|
|
|
|
|
|
|
|
| Rescue-ESE |
|
|
|
|
|
|
|
|
| RF-DYMHC |
|
|
|
|
|
|
|
|
|
| RibEx |
|
|
|
|
|
|
|
|
|
| rMotif |
|
|
|
|
|
|
|
|
|
| RSAT |
|
|
|
|
|
|
|
|
|
| RSSsite |
|
|
|
|
|
|
|
|
|
| RTAnalyzer |
|
|
|
|
|
|
|
|
| rVISTA |
|
|
|
|
|
|
|
|
|
| Satellog |
|
|
|
|
|
|
|
|
|
| ScanACE |
|
|
|
|
|
|
|
|
|
| SCOPE |
|
|
|
|
|
|
|
|
|
| SeLOX |
|
|
|
|
|
|
|
|
|
| SeqVISTA |
|
|
|
|
|
|
|
|
|
| Sfmap |
|
|
|
|
|
|
|
|
|
| SITECON |
|
|
|
|
|
|
|
|
|
| SiteSeer |
|
|
|
|
|
|
|
|
|
| SNPmasker |
|
|
|
|
|
|
|
|
| Spatt |
|
|
|
|
|
|
|
|
|
| SSA |
|
|
|
|
|
|
|
|
|
| STAMP |
|
|
|
|
|
|
|
|
|
| SynoR |
|
|
|
|
|
|
|
|
|
| T-Reg Comparator |
|
|
|
|
|
|
|
|
| TACT |
|
|
|
|
|
|
|
|
|
| Target
Explorer |
|
|
|
|
|
|
|
|
| TFBScluster |
|
|
|
|
|
|
|
|
| TFM-Explorer |
|
|
|
|
|
|
|
|
| The Sequence
Manipulation Suite 2 |
|
|
|
|
|
|
| THREaD Mapper
Studio |
|
|
|
|
|
|
|
| TIGR Software Tools |
|
|
|
|
|
|
|
|
| TOUCAN 2 |
|
|
|
|
|
|
|
|
|
| TRACTS |
|
|
|
|
|
|
|
|
|
| TRANSFAC |
|
|
|
|
|
|
|
|
|
| VISTA |
|
|
|
|
|
|
|
|
|
| VOMBAT |
|
|
|
|
|
|
|
|
|
| Web 3DNA |
|
|
|
|
|
|
|
|
| Web Weeder |
|
|
|
|
|
|
|
|
| WEB-THERMODYN |
|
|
|
|
|
|
|
|
| WebMOTIFS |
|
|
|
|
|
|
|
|
| WordSpy |
|
|
|
|
|
|
|
|
|
| Xxmotif |
|
|
|
|
|
|
|
|
|
| YMF 3.0 |
|
|
|
|
|
|
|
|
|
| ZiFiT |
|
|
|
|
|
|
|
|
|
| Zinc Finger Tools |
|
|
|
|
|
|
|
|
| Tools
For the Bench |
|
|
|
|
|
|
|
|
| ASePCR |
|
|
|
|
|
|
|
|
|
| Assembly PCR Oligo Maker |
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| chipD |
|
|
|
|
|
|
|
|
|
| CODEHOP |
|
|
|
|
|
|
|
|
|
| DePIE |
|
|
|
|
|
|
|
|
|
| DEQOR |
|
|
|
|
|
|
|
|
|
| DINAMelt |
|
|
|
|
|
|
|
|
|
| dsCheck |
|
|
|
|
|
|
|
|
|
| DyNaVacS |
|
|
|
|
|
|
|
|
|
| E-RNAi |
|
|
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| Electronic
PCR |
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| GeMprospector |
|
|
|
|
|
|
|
|
| Gene2Oligo |
|
|
|
|
|
|
|
|
| Genefisher |
|
|
|
|
|
|
|
|
|
| GenePattern
2.0 |
|
|
|
|
|
|
|
|
| GenoCAD |
|
|
|
|
|
|
|
|
|
| GLUE,
GLUE-IT, PEDEL, PEDEL-AA and DRIVeR |
|
|
|
|
|
|
| IDT
SciTools |
|
|
|
|
|
|
|
|
| Medical
Acronym Finder |
|
|
|
|
|
|
|
| MFEprimer-2.0 |
|
|
|
|
|
|
|
|
| MutScreener |
|
|
|
|
|
|
|
|
| NEBcutter |
|
|
|
|
|
|
|
|
|
| NTMG |
|
|
|
|
|
|
|
|
|
| OligoCalc |
|
|
|
|
|
|
|
|
|
| OligoHeatMap |
|
|
|
|
|
|
|
|
| OligoWiz |
|
|
|
|
|
|
|
|
|
| PARSESNP |
|
|
|
|
|
|
|
|
|
| PCRTiler |
|
|
|
|
|
|
|
|
|
| PDA |
|
|
|
|
|
|
|
|
|
| pDRAW32 |
|
|
|
|
|
|
|
|
|
| PHUSER |
|
|
|
|
|
|
|
|
|
| PlasMapper |
|
|
|
|
|
|
|
|
| PriFi |
|
|
|
|
|
|
|
|
|
| Primaclade |
|
|
|
|
|
|
|
|
| Primer Z |
|
|
|
|
|
|
|
|
|
| Primer3 |
|
|
|
|
|
|
|
|
|
| Primer3Plus |
|
|
|
|
|
|
|
|
| primers4clades |
|
|
|
|
|
|
|
|
| PrimerStation |
|
|
|
|
|
|
|
|
| ProbeLynx |
|
|
|
|
|
|
|
|
|
| ProteinCCD |
|
|
|
|
|
|
|
|
| REPK |
|
|
|
|
|
|
|
|
|
| RF-cloning.org |
|
|
|
|
|
|
|
|
| Sfold |
|
|
|
|
|
|
|
|
|
| siDirect |
|
|
|
|
|
|
|
|
|
| siRNA Selection
Server |
|
|
|
|
|
|
|
|
| siRNAdb |
|
|
|
|
|
|
|
|
|
| siVirus |
|
|
|
|
|
|
|
|
|
| SNPbox |
|
|
|
|
|
|
|
|
|
| SNPmasker |
|
|
|
|
|
|
|
|
| Sockeye |
|
|
|
|
|
|
|
|
|
| Software
for MacOSX at Mek&Tosj.com |
|
|
|
|
|
|
| Stitchprofiles.uio.no |
|
|
|
|
|
|
|
|
| TaxMan |
|
|
|
|
|
|
|
|
|
| TGGE-STAR |
|
|
|
|
|
|
|
|
| TmPrime |
|
|
|
|
|
|
|
|
|
| TROD |
|
|
|
|
|
|
|
|
|
| UGENE |
|
|
|
|
|
|
|
|
|
| UniPrime2 |
|
|
|
|
|
|
|
|
| VectorNTI |
|
|
|
|
|
|
|
|
|
| WatCut |
|
|
|
|
|
|
|
|
|
| WebPrlnSeS |
|
|
|
|
|
|
|
|
| WebTraceMiner |
|
|
|
|
|
|
|
|
|
| Education |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Bioinformatics
Related News Sources |
|
|
|
|
|
|
| Bio-IT World |
|
|
|
|
|
|
|
|
| Color Base
Pair |
|
|
|
|
|
|
|
|
| Eureka
Alert |
|
|
|
|
|
|
|
|
| Genome News Network |
|
|
|
|
|
|
|
| Genome Web |
|
|
|
|
|
|
|
|
| snowdeal.org
(Bio,medical) informatics |
|
|
|
|
|
|
| The Scientist |
|
|
|
|
|
|
|
|
| Community |
|
|
|
|
|
|
|
|
| BCHIMPS |
|
|
|
|
|
|
|
|
|
| Canada
Bioinformatics People |
|
|
|
|
|
|
|
| Canada Health
Infoway |
|
|
|
|
|
|
|
| Canadian Society for
System Biology |
|
|
|
|
|
|
| CHIMA |
|
|
|
|
|
|
|
|
|
| COACH |
|
|
|
|
|
|
|
|
|
| Genome Canada |
|
|
|
|
|
|
|
|
| HUMan MOLecular GENetics
Portal Site |
|
|
|
|
|
|
| International Society
Computational Biology |
|
|
|
|
|
|
| McGill Centre for
Bioinformatics |
|
|
|
|
|
|
|
| Michael Smith Genom Scientist
Centre |
|
|
|
|
|
|
| Montreal Proteomics
Network (RPMPN) |
|
|
|
|
|
|
| National Center
for Biotechnology Information |
|
|
|
|
|
| Open Bioinformatic
Foundation |
|
|
|
|
|
|
|
| TCAG: The Centre for Applied
Genomics, Toronto |
|
|
|
|
|
| The Bioinformatic
Organization, Inc. |
|
|
|
|
|
|
| The European
Bioinformatics Institute (EBI) |
|
|
|
|
|
|
| UBC Bioinformatics
Center (UBiC) |
|
|
|
|
|
|
|
| VanBUG - Vancouver
Bioinformatics User Group |
|
|
|
|
|
| Courses,
Programs and Workshops |
|
|
|
|
|
|
| A List
of Bioinformatic Courses |
|
|
|
|
|
|
|
| Canadian Bioinformatics
Workshops |
|
|
|
|
|
|
| Directories
and Portals |
|
|
|
|
|
|
|
| BioCatalouge |
|
|
|
|
|
|
|
|
| Bioinformatics
Links Directory |
|
|
|
|
|
|
|
| Bioinformatik |
|
|
|
|
|
|
|
|
| CMS Molecular
Biology Resource |
|
|
|
|
|
|
|
| Color Base
Pair |
|
|
|
|
|
|
|
|
| EBI Tools |
|
|
|
|
|
|
|
|
|
| ExPaSy Molecular Biology
Server |
|
|
|
|
|
|
|
| Life Science
Directory |
|
|
|
|
|
|
|
|
| Links to the Genetic World |
|
|
|
|
|
|
|
| National Center for
Biotechnology Information |
|
|
|
|
|
| OpenHelix |
|
|
|
|
|
|
|
|
|
| PathGuide |
|
|
|
|
|
|
|
|
|
| PBIL |
|
|
|
|
|
|
|
|
|
| SimGene |
|
|
|
|
|
|
|
|
|
| Swiss EMBnet |
|
|
|
|
|
|
|
|
| The European
Bioinformatics Institute (EBI) |
|
|
|
|
|
|
| Women in
Biology Internet Launch Pages |
|
|
|
|
|
|
| XML Central of
DDBJ |
|
|
|
|
|
|
|
|
| General |
|
|
|
|
|
|
|
|
|
| 2can Bioinformatics
Educational Resource |
|
|
|
|
|
|
| Biology Online |
|
|
|
|
|
|
|
|
| BioTeach |
|
|
|
|
|
|
|
|
|
| CSHL Oral
History Collection |
|
|
|
|
|
|
|
| DNA Learning
Center, Cold Spring Harbor Laboratory |
|
|
|
|
|
| FOLDOC - Computing Dictionary |
|
|
|
|
|
|
|
| Genome British
Columbia«s Learning Centre |
|
|
|
|
|
|
| Glossary of
Genetic Terms, NHGRI |
|
|
|
|
|
|
|
| GNN\«s
Genomics Glossary |
|
|
|
|
|
|
|
| NCBI
Bookshelf |
|
|
|
|
|
|
|
|
| NCBI Education |
|
|
|
|
|
|
|
|
| Understanding
Evolution |
|
|
|
|
|
|
|
| Yourgenome.org |
|
|
|
|
|
|
|
|
| Tutorals
and Directed Learning Resources |
|
|
|
|
|
|
| 2can Bioinformatics
Educational Resource |
|
|
|
|
|
|
| Canadian Bioinformatics
Workshops |
|
|
|
|
|
|
| How to Use the
Human Draft Sequence |
|
|
|
|
|
|
| Learn
how to use NCBI resources |
|
|
|
|
|
|
|
| MIT OpenCourseWare |
|
|
|
|
|
|
|
|
| NCBI Education |
|
|
|
|
|
|
|
|
| OpenHelix |
|
|
|
|
|
|
|
|
|
| S-Star.org |
|
|
|
|
|
|
|
|
|
| Users Guide to the Human Genome |
|
|
|
|
|
|
|
| Expression |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| cDNA,
EST, SAGE |
|
|
|
|
|
|
|
|
| ACID |
|
|
|
|
|
|
|
|
|
| ADGO |
|
|
|
|
|
|
|
|
|
| ALGGEN |
|
|
|
|
|
|
|
|
|
| Alien Brain Atlas |
|
|
|
|
|
|
|
|
| AntiHunter
2.0 |
|
|
|
|
|
|
|
|
| ASPic |
|
|
|
|
|
|
|
|
|
| Babelomics |
|
|
|
|
|
|
|
|
| Cancer Genome Anatomy
Project |
|
|
|
|
|
|
|
| DEEP |
|
|
|
|
|
|
|
|
|
| DiscoverySpace |
|
|
|
|
|
|
|
|
| E2G |
|
|
|
|
|
|
|
|
|
| Egassembler |
|
|
|
|
|
|
|
|
| ENDEAVOUR |
|
|
|
|
|
|
|
|
| ESTExplorer |
|
|
|
|
|
|
|
|
| GeMprospector |
|
|
|
|
|
|
|
|
| GeneCAT |
|
|
|
|
|
|
|
|
|
| GeneHub-GEPIS |
|
|
|
|
|
|
|
|
| Genome Database for Rosaceae |
|
|
|
|
|
|
|
| MADNet |
|
|
|
|
|
|
|
|
|
| Mammalian Gene Collection |
|
|
|
|
|
|
|
| Microarray Retriever |
|
|
|
|
|
|
|
|
| MirZ |
|
|
|
|
|
|
|
|
|
| Mouse
Atlas of Gene Expression |
|
|
|
|
|
|
|
| OligoArray |
|
|
|
|
|
|
|
|
|
| OREST |
|
|
|
|
|
|
|
|
|
| OrthoSelect |
|
|
|
|
|
|
|
|
| PatMatch |
|
|
|
|
|
|
|
|
|
| PLecDom |
|
|
|
|
|
|
|
|
|
| ProdoNet |
|
|
|
|
|
|
|
|
|
| ProfCom |
|
|
|
|
|
|
|
|
|
| SAGE Home Page |
|
|
|
|
|
|
|
|
| SAGEmap |
|
|
|
|
|
|
|
|
|
| SOURCE |
|
|
|
|
|
|
|
|
|
| TCAG: The Centre for Applied
Genomics, Toronto |
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| UniGene |
|
|
|
|
|
|
|
|
|
| WebGMAP |
|
|
|
|
|
|
|
|
| WebTraceMiner |
|
|
|
|
|
|
|
|
| Databases |
|
|
|
|
|
|
|
|
|
| ArrayExpress update |
|
|
|
|
|
|
|
|
| Bgee |
|
|
|
|
|
|
|
|
|
| CaSNP |
|
|
|
|
|
|
|
|
|
| CellBase |
|
|
|
|
|
|
|
|
|
| COXPRESdb |
|
|
|
|
|
|
|
|
| Cyclebase |
|
|
|
|
|
|
|
|
|
| EMAGE |
|
|
|
|
|
|
|
|
|
| ENCODE DCC |
|
|
|
|
|
|
|
|
| FANTOM |
|
|
|
|
|
|
|
|
|
| Gene Expression
Barcode |
|
|
|
|
|
|
|
| Gene Expression
Database (GXD) |
|
|
|
|
|
|
|
| GenSigDB |
|
|
|
|
|
|
|
|
|
| GGRNA |
|
|
|
|
|
|
|
|
|
| GXA |
|
|
|
|
|
|
|
|
|
| H-DBAS |
|
|
|
|
|
|
|
|
|
| JASPAR |
|
|
|
|
|
|
|
|
|
| NCBI GEO |
|
|
|
|
|
|
|
|
|
| NCBI Resources |
|
|
|
|
|
|
|
|
| Pancreatic
Expression database |
|
|
|
|
|
|
|
| PLANdbAffy |
|
|
|
|
|
|
|
|
| RegPrecise |
|
|
|
|
|
|
|
|
|
| RiceXPro |
|
|
|
|
|
|
|
|
|
| The European Bioinformatic
Institute (EBI) |
|
|
|
|
|
|
| Gene
Regulation |
|
|
|
|
|
|
|
|
| ALGGEN |
|
|
|
|
|
|
|
|
|
| AntiHunter
2.0 |
|
|
|
|
|
|
|
|
| ARGO |
|
|
|
|
|
|
|
|
|
| AthaMap |
|
|
|
|
|
|
|
|
|
| Babelomics |
|
|
|
|
|
|
|
|
| BEARR |
|
|
|
|
|
|
|
|
|
| BioBayesNet |
|
|
|
|
|
|
|
|
| BioProspector |
|
|
|
|
|
|
|
|
| CARRIE |
|
|
|
|
|
|
|
|
|
| CEAS |
|
|
|
|
|
|
|
|
|
| CENTDIST |
|
|
|
|
|
|
|
|
|
| Chinook |
|
|
|
|
|
|
|
|
|
| ChiP-Array |
|
|
|
|
|
|
|
|
|
| CisMols |
|
|
|
|
|
|
|
|
|
| cisRED |
|
|
|
|
|
|
|
|
|
| Cluster Buster |
|
|
|
|
|
|
|
|
| CMA |
|
|
|
|
|
|
|
|
|
| CompareProspector |
|
|
|
|
|
|
|
|
| CONFAC |
|
|
|
|
|
|
|
|
|
| CONREAL |
|
|
|
|
|
|
|
|
|
| Consite |
|
|
|
|
|
|
|
|
|
| ConTra |
|
|
|
|
|
|
|
|
|
| CREME |
|
|
|
|
|
|
|
|
|
| CRSD |
|
|
|
|
|
|
|
|
|
| Cscan |
|
|
|
|
|
|
|
|
|
| CSTminer |
|
|
|
|
|
|
|
|
|
| DATF |
|
|
|
|
|
|
|
|
|
| DAVID
Bioinformatics Resources |
|
|
|
|
|
|
|
| DEEP |
|
|
|
|
|
|
|
|
|
| Defining
Transcriptional Programs in Vascular Endothelium |
|
|
|
|
| DEQOR |
|
|
|
|
|
|
|
|
|
| DIANA miRPath |
|
|
|
|
|
|
|
|
| DIANA-microT |
|
|
|
|
|
|
|
|
| DiRE |
|
|
|
|
|
|
|
|
|
| DiscoverySpace |
|
|
|
|
|
|
|
|
| Drosophila Dnase I footprint
database |
|
|
|
|
|
|
| DRTF |
|
|
|
|
|
|
|
|
|
| dsCheck |
|
|
|
|
|
|
|
|
|
| E-RNAi |
|
|
|
|
|
|
|
|
|
| Eponine |
|
|
|
|
|
|
|
|
|
| FatiGOplus |
|
|
|
|
|
|
|
|
| FirstEF |
|
|
|
|
|
|
|
|
|
| Footer |
|
|
|
|
|
|
|
|
|
| g:Profiler |
|
|
|
|
|
|
|
|
|
| Gene Regulation |
|
|
|
|
|
|
|
|
| GeneSet2miRNA |
|
|
|
|
|
|
|
|
| Genome Surveyor |
|
|
|
|
|
|
|
|
| Gibbs
Motif Sampler |
|
|
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| iCR |
|
|
|
|
|
|
|
|
|
| INCLUSive |
|
|
|
|
|
|
|
|
|
| INTERFEROME |
|
|
|
|
|
|
|
|
| JASPAR |
|
|
|
|
|
|
|
|
|
| jPREdictor |
|
|
|
|
|
|
|
|
|
| MADAP |
|
|
|
|
|
|
|
|
|
| MAGIA2 |
|
|
|
|
|
|
|
|
|
| Match |
|
|
|
|
|
|
|
|
|
| Mdscan |
|
|
|
|
|
|
|
|
|
| Melinall |
|
|
|
|
|
|
|
|
|
| MEME Suite |
|
|
|
|
|
|
|
|
| MicroFootPrinter |
|
|
|
|
|
|
|
|
| MicroInspector |
|
|
|
|
|
|
|
|
| miRanalyzer |
|
|
|
|
|
|
|
|
| mirConnX |
|
|
|
|
|
|
|
|
|
| mirTools |
|
|
|
|
|
|
|
|
|
| miRU |
|
|
|
|
|
|
|
|
|
| miRvestigator |
|
|
|
|
|
|
|
|
| MirZ |
|
|
|
|
|
|
|
|
|
| MMIA |
|
|
|
|
|
|
|
|
|
| MoD Tools |
|
|
|
|
|
|
|
|
|
| MYBS |
|
|
|
|
|
|
|
|
|
| NXSensor |
|
|
|
|
|
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|
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| Onto-Tools |
|
|
|
|
|
|
|
|
| oPOSSUM |
|
|
|
|
|
|
|
|
|
| ORegAnno |
|
|
|
|
|
|
|
|
|
| OSU
Bioinformatics and Computational Biology |
|
|
|
|
|
| PAP |
|
|
|
|
|
|
|
|
|
| PatMatch |
|
|
|
|
|
|
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|
|
| PAZAR |
|
|
|
|
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|
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|
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| PHIRE |
|
|
|
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|
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| Phyloscan |
|
|
|
|
|
|
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|
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| PlantTFDB |
|
|
|
|
|
|
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|
|
| PlnTFDB |
|
|
|
|
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| POBO |
|
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| POCO |
|
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|
|
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|
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| POXO |
|
|
|
|
|
|
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|
|
| PredictRegulon |
|
|
|
|
|
|
|
|
| PRI-CAT |
|
|
|
|
|
|
|
|
|
| PromH |
|
|
|
|
|
|
|
|
|
| PromoterPlot |
|
|
|
|
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|
|
|
| PromoterWise |
|
|
|
|
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|
|
| PROSITE |
|
|
|
|
|
|
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|
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| Pscan |
|
|
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|
|
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| PubGene |
|
|
|
|
|
|
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|
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| ReadOut |
|
|
|
|
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|
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| REDfly |
|
|
|
|
|
|
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|
|
| REDUCE |
|
|
|
|
|
|
|
|
|
| RegAnalyst |
|
|
|
|
|
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|
|
| RegPrecise |
|
|
|
|
|
|
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|
|
| RegPredict |
|
|
|
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|
|
| RegRNA |
|
|
|
|
|
|
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|
|
| RENATO |
|
|
|
|
|
|
|
|
|
| ResponceNet |
|
|
|
|
|
|
|
|
| RibEx |
|
|
|
|
|
|
|
|
|
| Riboswitch finder |
|
|
|
|
|
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|
|
| rMotif |
|
|
|
|
|
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|
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| RNAhybrid |
|
|
|
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| RSAT |
|
|
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|
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|
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| rVISTA |
|
|
|
|
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| SCOPE |
|
|
|
|
|
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|
|
| Sfold |
|
|
|
|
|
|
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|
|
| siDirect |
|
|
|
|
|
|
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|
|
| SIREs |
|
|
|
|
|
|
|
|
|
| siRNA Selection
Server |
|
|
|
|
|
|
|
|
| siRNAdb |
|
|
|
|
|
|
|
|
|
| SITECON |
|
|
|
|
|
|
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|
|
| SiteSeer |
|
|
|
|
|
|
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|
|
| siVirus |
|
|
|
|
|
|
|
|
|
| SNPinfo |
|
|
|
|
|
|
|
|
|
| SPEED |
|
|
|
|
|
|
|
|
|
| SSA |
|
|
|
|
|
|
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|
|
| STAMP |
|
|
|
|
|
|
|
|
|
| SynoR |
|
|
|
|
|
|
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|
|
| T-Reg Comparator |
|
|
|
|
|
|
|
|
| Target
Explorer |
|
|
|
|
|
|
|
|
| TFBcluster |
|
|
|
|
|
|
|
|
|
| TFM-Explorer |
|
|
|
|
|
|
|
|
| TOUCAN 2 |
|
|
|
|
|
|
|
|
|
| TraFac |
|
|
|
|
|
|
|
|
|
| TRANSFAC |
|
|
|
|
|
|
|
|
|
| TransFind |
|
|
|
|
|
|
|
|
|
| TROD |
|
|
|
|
|
|
|
|
|
| VOMBAT |
|
|
|
|
|
|
|
|
|
| Web Weeder |
|
|
|
|
|
|
|
|
| WebMOTIFS |
|
|
|
|
|
|
|
|
| WordSpy |
|
|
|
|
|
|
|
|
|
| ZiFiT |
|
|
|
|
|
|
|
|
|
| Zinc Finger Tools |
|
|
|
|
|
|
|
|
| Gene
Set Analysis |
|
|
|
|
|
|
|
|
| ADGO |
|
|
|
|
|
|
|
|
|
| AutoClass@IJM |
|
|
|
|
|
|
|
|
| BioProfiling.de |
|
|
|
|
|
|
|
|
| Ccancer |
|
|
|
|
|
|
|
|
|
| G-SESAME |
|
|
|
|
|
|
|
|
|
| Gendoo |
|
|
|
|
|
|
|
|
|
| GeneCodis3 |
|
|
|
|
|
|
|
|
| GeneMANIA |
|
|
|
|
|
|
|
|
| GeneSet2miRNA |
|
|
|
|
|
|
|
|
| GeSBAP |
|
|
|
|
|
|
|
|
|
| GPSy |
|
|
|
|
|
|
|
|
|
| GSA-SNP |
|
|
|
|
|
|
|
|
|
| MAGIA2 |
|
|
|
|
|
|
|
|
|
| MARQ |
|
|
|
|
|
|
|
|
|
| mirConnX |
|
|
|
|
|
|
|
|
|
| PINT |
|
|
|
|
|
|
|
|
|
| PINTA |
|
|
|
|
|
|
|
|
|
| Pscan |
|
|
|
|
|
|
|
|
|
| R
spider |
|
|
|
|
|
|
|
|
|
| ResponceNet |
|
|
|
|
|
|
|
|
| RuleGO |
|
|
|
|
|
|
|
|
|
| SNPsyn |
|
|
|
|
|
|
|
|
|
| SPEED |
|
|
|
|
|
|
|
|
|
| SteinerNet |
|
|
|
|
|
|
|
|
|
| Targetfinder.org |
|
|
|
|
|
|
|
|
| TFM-Explorer |
|
|
|
|
|
|
|
|
| ToppCluster -
comparative enriched features network generator and analyzer |
|
|
|
| ToppGene Suite |
|
|
|
|
|
|
|
|
| TransFind |
|
|
|
|
|
|
|
|
|
| VisANT |
|
|
|
|
|
|
|
|
|
| VisHiC |
|
|
|
|
|
|
|
|
|
| WebGestalt |
|
|
|
|
|
|
|
|
| WhichGenes |
|
|
|
|
|
|
|
|
| Networks |
|
|
|
|
|
|
|
|
|
| Babelomics |
|
|
|
|
|
|
|
|
| BioMet Toolbox |
|
|
|
|
|
|
|
|
| CPA - Comparative Pathway Analyzer |
|
|
|
|
|
|
| DIANA miRPath |
|
|
|
|
|
|
|
|
| ENDEAVOUR |
|
|
|
|
|
|
|
|
| GeneCodis3 |
|
|
|
|
|
|
|
|
| GENIES |
|
|
|
|
|
|
|
|
|
| GenoCAD |
|
|
|
|
|
|
|
|
|
| GraphWeb |
|
|
|
|
|
|
|
|
| IMP |
|
|
|
|
|
|
|
|
|
| IntScore |
|
|
|
|
|
|
|
|
|
| KEGG: Kyoto
Encyclopedia of Genes and Genomes |
|
|
|
|
|
| MADNet |
|
|
|
|
|
|
|
|
|
| MAGNET |
|
|
|
|
|
|
|
|
|
| mirConnX |
|
|
|
|
|
|
|
|
|
| NeAT |
|
|
|
|
|
|
|
|
|
| ProdoNet |
|
|
|
|
|
|
|
|
|
| SNPsyn |
|
|
|
|
|
|
|
|
|
| SPEED |
|
|
|
|
|
|
|
|
|
| SurvNet |
|
|
|
|
|
|
|
|
|
| ToppGene Suite |
|
|
|
|
|
|
|
|
| VisANT |
|
|
|
|
|
|
|
|
|
| Protein
Expression |
|
|
|
|
|
|
|
|
| AutoClass@IJM |
|
|
|
|
|
|
|
|
| Babelomics |
|
|
|
|
|
|
|
|
| bioNMF |
|
|
|
|
|
|
|
|
|
| ENDEAVOUR |
|
|
|
|
|
|
|
|
| ExPaSy 2-D
PAGE databases and services |
|
|
|
|
|
|
| GELBANK |
|
|
|
|
|
|
|
|
|
| GelScape and GelBank |
|
|
|
|
|
|
|
|
| GeneExpress2.1 |
|
|
|
|
|
|
|
|
| GenoCAD |
|
|
|
|
|
|
|
|
|
| GOEAST |
|
|
|
|
|
|
|
|
|
| JVirGel |
|
|
|
|
|
|
|
|
|
| MADNet |
|
|
|
|
|
|
|
|
|
| NCI Flicker |
|
|
|
|
|
|
|
|
|
| OPTIMIZER |
|
|
|
|
|
|
|
|
| Pomelo II |
|
|
|
|
|
|
|
|
|
| ProdoNet |
|
|
|
|
|
|
|
|
|
| ProfCom |
|
|
|
|
|
|
|
|
|
| ProMoST |
|
|
|
|
|
|
|
|
|
| ProteinCCD |
|
|
|
|
|
|
|
|
| SWISS-2DPAGE |
|
|
|
|
|
|
|
|
| VisANT |
|
|
|
|
|
|
|
|
|
| Splicing |
|
|
|
|
|
|
|
|
|
| AltAnalyze |
|
|
|
|
|
|
|
|
|
| Alternative Splicing
Database (ASD) Project |
|
|
|
|
|
|
| Alternative Spicing
Gallery |
|
|
|
|
|
|
|
| ASePCR |
|
|
|
|
|
|
|
|
|
| Asmodeler |
|
|
|
|
|
|
|
|
|
| ASPic |
|
|
|
|
|
|
|
|
|
| Astalavista |
|
|
|
|
|
|
|
|
|
| AUGUSTUS |
|
|
|
|
|
|
|
|
| ESEfinder |
|
|
|
|
|
|
|
|
|
| GeneSeqer |
|
|
|
|
|
|
|
|
|
| GeneSplicer |
|
|
|
|
|
|
|
|
| Netgene2 |
|
|
|
|
|
|
|
|
|
| ProSplicer |
|
|
|
|
|
|
|
|
|
| QGRS
Mapper |
|
|
|
|
|
|
|
|
| RegRNA |
|
|
|
|
|
|
|
|
|
| Rescue-ESE |
|
|
|
|
|
|
|
|
| SNPinfo |
|
|
|
|
|
|
|
|
|
| SplicePort |
|
|
|
|
|
|
|
|
|
| SROOGLE |
|
|
|
|
|
|
|
|
|
| Transcript
Expression Analysis |
|
|
|
|
|
|
|
| ACID |
|
|
|
|
|
|
|
|
|
| ACT |
|
|
|
|
|
|
|
|
|
| Affymetrix
NetAffx Analysis Center |
|
|
|
|
|
|
|
| AMIC@ |
|
|
|
|
|
|
|
|
|
| ArrayExpress |
|
|
|
|
|
|
|
|
| ArrayPipe |
|
|
|
|
|
|
|
|
|
| ArrayXPath |
|
|
|
|
|
|
|
|
| Asterias |
|
|
|
|
|
|
|
|
|
| AutoClass@IJM |
|
|
|
|
|
|
|
|
| Babelomics |
|
|
|
|
|
|
|
|
| BEARR |
|
|
|
|
|
|
|
|
|
| Bioconductor |
|
|
|
|
|
|
|
|
| BiologicalNetworks |
|
|
|
|
|
|
|
|
| BioMet Toolbox |
|
|
|
|
|
|
|
|
| bioNMF |
|
|
|
|
|
|
|
|
|
| BioPortal |
|
|
|
|
|
|
|
|
|
| BioProspector |
|
|
|
|
|
|
|
|
| BROP |
|
|
|
|
|
|
|
|
|
| BTW |
|
|
|
|
|
|
|
|
|
| Build
your own arrayer |
|
|
|
|
|
|
|
| Canadian
Microarray Resources |
|
|
|
|
|
|
|
| CAPweb |
|
|
|
|
|
|
|
|
|
| CARMAweb |
|
|
|
|
|
|
|
|
| CARRIE |
|
|
|
|
|
|
|
|
|
| CEAS |
|
|
|
|
|
|
|
|
|
| ChipInfo |
|
|
|
|
|
|
|
|
|
| CIBEX |
|
|
|
|
|
|
|
|
|
| CLIC |
|
|
|
|
|
|
|
|
|
| CMA |
|
|
|
|
|
|
|
|
|
| CompareProspector |
|
|
|
|
|
|
|
|
| CONFAC |
|
|
|
|
|
|
|
|
|
| CoPub |
|
|
|
|
|
|
|
|
|
| CRSD |
|
|
|
|
|
|
|
|
|
| Cyber-T Webserver |
|
|
|
|
|
|
|
|
| DARIO |
|
|
|
|
|
|
|
|
|
| DEEP |
|
|
|
|
|
|
|
|
|
| Defining
Transcriptional Programs in Vascular Endothelium |
|
|
|
|
| Doelan |
|
|
|
|
|
|
|
|
|
| DSAP |
|
|
|
|
|
|
|
|
|
| ENDEAVOUR |
|
|
|
|
|
|
|
|
| Espression
Profiler |
|
|
|
|
|
|
|
|
| ExpressYourself |
|
|
|
|
|
|
|
|
| FatiGOplus |
|
|
|
|
|
|
|
|
| g:Profiler |
|
|
|
|
|
|
|
|
|
| GEMS |
|
|
|
|
|
|
|
|
|
| Gene
Expression Data Analyzer |
|
|
|
|
|
|
|
| GeneCAT |
|
|
|
|
|
|
|
|
|
| GenePublisher |
|
|
|
|
|
|
|
|
| GeneTrail |
|
|
|
|
|
|
|
|
|
| GenMAPP |
|
|
|
|
|
|
|
|
|
| GEPAS |
|
|
|
|
|
|
|
|
|
| GFINDer |
|
|
|
|
|
|
|
|
|
| GOEAST |
|
|
|
|
|
|
|
|
|
| GoSurfer |
|
|
|
|
|
|
|
|
|
| Idconverter |
|
|
|
|
|
|
|
|
| INCLUSive |
|
|
|
|
|
|
|
|
|
| JProGO |
|
|
|
|
|
|
|
|
|
| KARMA |
|
|
|
|
|
|
|
|
|
| MADNet |
|
|
|
|
|
|
|
|
|
| MAGIA2 |
|
|
|
|
|
|
|
|
|
| MAGMA |
|
|
|
|
|
|
|
|
|
| MAGNET |
|
|
|
|
|
|
|
|
|
| MARQ |
|
|
|
|
|
|
|
|
|
| MatchMiner |
|
|
|
|
|
|
|
|
| MDscan |
|
|
|
|
|
|
|
|
|
| MedMiner |
|
|
|
|
|
|
|
|
|
| MIAMExpress |
|
|
|
|
|
|
|
|
| Microarray Gene Expression
Database |
|
|
|
|
|
|
| Microarray Retriever |
|
|
|
|
|
|
|
|
| MIDAW |
|
|
|
|
|
|
|
|
|
| mirAct |
|
|
|
|
|
|
|
|
|
| MMIA |
|
|
|
|
|
|
|
|
|
| NHGRI
Microarray Project |
|
|
|
|
|
|
|
| O-miner |
|
|
|
|
|
|
|
|
|
| OligoArray |
|
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|
| OligoWiz |
|
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| Onto-Tools |
|
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|
|
| OSCAR |
|
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| PaLS |
|
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| PANTHER Tools |
|
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| PAP |
|
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| PathExpress |
|
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| Pathway
Explorer |
|
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| PEACE |
|
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| PILGRM |
|
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| POBO |
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| Pomelo II |
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| POXO |
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| ProbeLynx |
|
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| ProdoNet |
|
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| ProfCom |
|
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| Pscan |
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| RACE |
|
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| REDUCE |
|
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| RobiNA |
|
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| rQuant.web |
|
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| SAVoR |
|
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| ScanAlyze,
Cluster, TreeView |
|
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| SEA |
|
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| SNPmasker |
|
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| SOURCE |
|
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| SPEED |
|
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| Stanford Microarray
Database (SMD) |
|
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|
| T-profiler |
|
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|
| Targetfinder.org |
|
|
|
|
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|
|
| The European Bioinformatic
Institute (EBI) |
|
|
|
|
|
|
| TIGR Software Tools |
|
|
|
|
|
|
|
|
| VisANT |
|
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| VisHiC |
|
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| WebGestalt |
|
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| Literature |
|
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| |
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| Databases |
|
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| BioNumbers |
|
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|
| genenames.org |
|
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| NBRP
resources |
|
|
|
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|
| NCBI Resources |
|
|
|
|
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|
|
| Protein Naming Utility |
|
|
|
|
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|
|
| The European
Bioinformatics Institute (EBI) |
|
|
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|
| UKPMC |
|
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|
| Goldmines |
|
|
|
|
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|
| NCBI
Bookshelf |
|
|
|
|
|
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|
|
| Nucleic Acid
Research Database Issue |
|
|
|
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|
|
| PubMed |
|
|
|
|
|
|
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|
| PubMed Central |
|
|
|
|
|
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|
|
| Users Guide to the Human Genome |
|
|
|
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|
|
| Open
Access Resources |
|
|
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|
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| BioPortal |
|
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| Ccancer |
|
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| Directory of Open Access Journal |
|
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|
| Public Library of Science |
|
|
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|
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| Search
Tools |
|
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| BioPortal |
|
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| botXminer |
|
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| EBI Tools |
|
|
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| eTBLAST |
|
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| GoPubMed |
|
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| GPSDB |
|
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| HubMed |
|
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| PubCrawler |
|
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| PubMed |
|
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| PubMed Central |
|
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| soaPDB |
|
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| XplorMed |
|
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| Text
Mining and Sematics |
|
|
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|
|
| ACELA |
|
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|
|
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|
| Acromine |
|
|
|
|
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|
| Acromine Disambiguator |
|
|
|
|
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|
|
| BeeSpace Navigator |
|
|
|
|
|
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|
|
| BioLit |
|
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|
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| bioNMF |
|
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|
| botXminer |
|
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|
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| BSQA |
|
|
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|
|
| CARGO |
|
|
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|
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|
|
| Chilibot |
|
|
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| CoPub |
|
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| DECA |
|
|
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|
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|
|
| E3Miner |
|
|
|
|
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|
|
| FABLE |
|
|
|
|
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|
|
| FACTA+ |
|
|
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|
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|
|
| G-SESAME |
|
|
|
|
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|
| Gendoo |
|
|
|
|
|
|
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|
|
| GeneView |
|
|
|
|
|
|
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|
|
| GŽnie |
|
|
|
|
|
|
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|
|
| GoGene |
|
|
|
|
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|
|
| GPSDB |
|
|
|
|
|
|
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|
|
| iHOP |
|
|
|
|
|
|
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|
|
| LitInspector |
|
|
|
|
|
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|
|
| LitMiner |
|
|
|
|
|
|
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|
|
| MARBL |
|
|
|
|
|
|
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|
|
| Medical
Arconym Finder |
|
|
|
|
|
|
|
| MedlineRanker |
|
|
|
|
|
|
|
|
| MedMiner |
|
|
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|
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|
|
| NLProt |
|
|
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|
| PIE |
|
|
|
|
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|
|
| PLAN2L |
|
|
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|
| PolySearch |
|
|
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|
|
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|
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| PosMed |
|
|
|
|
|
|
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|
|
| PubGene |
|
|
|
|
|
|
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|
|
| Sematic-JSON |
|
|
|
|
|
|
|
|
| SENT |
|
|
|
|
|
|
|
|
|
| text2genome |
|
|
|
|
|
|
|
|
| XplorMed |
|
|
|
|
|
|
|
|
|
| Yeast
MetaboliNER |
|
|
|
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|
|
| Model
Organisms |
|
|
|
|
|
|
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| |
|
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|
|
|
|
|
|
|
| Databases |
|
|
|
|
|
|
|
|
|
| AgBase |
|
|
|
|
|
|
|
|
|
| AGRIS |
|
|
|
|
|
|
|
|
|
| AHD2.0 |
|
|
|
|
|
|
|
|
|
| AmobeaDB and MicrosporidiaDB |
|
|
|
|
|
|
|
| ArachnoServer 2.0 |
|
|
|
|
|
|
|
|
| AspGD |
|
|
|
|
|
|
|
|
|
| AtPID |
|
|
|
|
|
|
|
|
|
| BeetleBase |
|
|
|
|
|
|
|
|
|
| Bgee |
|
|
|
|
|
|
|
|
|
| Bovine Genome Database |
|
|
|
|
|
|
|
| CAMERA |
|
|
|
|
|
|
|
|
|
| Candida Genome Database |
|
|
|
|
|
|
|
| CellBase |
|
|
|
|
|
|
|
|
|
| CiF |
|
|
|
|
|
|
|
|
|
| CIPRO 2.5 |
|
|
|
|
|
|
|
|
|
| COMBREX |
|
|
|
|
|
|
|
|
|
| Comprehensive
Microbial Resource (CMR) |
|
|
|
|
|
|
| ConsensusPathDB |
|
|
|
|
|
|
|
|
| COXPRESdb |
|
|
|
|
|
|
|
|
| CyanoBase |
|
|
|
|
|
|
|
|
|
| dictyBase update 2011 |
|
|
|
|
|
|
|
| DroID |
|
|
|
|
|
|
|
|
|
| DRYGin |
|
|
|
|
|
|
|
|
|
| EcoCyc |
|
|
|
|
|
|
|
|
|
| EMAGE |
|
|
|
|
|
|
|
|
|
| EMMA |
|
|
|
|
|
|
|
|
|
| Ensembl |
|
|
|
|
|
|
|
|
|
| Ensembl Genomes |
|
|
|
|
|
|
|
|
| EuPathDB (formerly ApiDB) |
|
|
|
|
|
|
|
| EuroPhenome |
|
|
|
|
|
|
|
|
| FGDB |
|
|
|
|
|
|
|
|
|
| FlyFactorSurvey |
|
|
|
|
|
|
|
|
| FlyFT |
|
|
|
|
|
|
|
|
|
| Full-parasites |
|
|
|
|
|
|
|
|
| Gemina |
|
|
|
|
|
|
|
|
|
| Gene Expression
Database (GXD) |
|
|
|
|
|
|
|
| GenomeRNAi |
|
|
|
|
|
|
|
|
| GO |
|
|
|
|
|
|
|
|
|
| GOLD |
|
|
|
|
|
|
|
|
|
| Gramene database in 2010 |
|
|
|
|
|
|
|
| GreenPhylDB v2.0 |
|
|
|
|
|
|
|
|
| Hymenoptera Genome
Database |
|
|
|
|
|
|
|
| IGRhCellID |
|
|
|
|
|
|
|
|
| IKMC |
|
|
|
|
|
|
|
|
|
| Integrated Microbial Genomes
(IMG) |
|
|
|
|
|
|
| IsoBase |
|
|
|
|
|
|
|
|
|
| KEGG |
|
|
|
|
|
|
|
|
|
| LSD |
|
|
|
|
|
|
|
|
|
| Megx.com |
|
|
|
|
|
|
|
|
|
| MicrobesOnline |
|
|
|
|
|
|
|
|
| Microbial Genome Databases
(MBGD) |
|
|
|
|
|
|
| MiST |
|
|
|
|
|
|
|
|
|
| Mouse Genome Database
(MGD) |
|
|
|
|
|
|
|
| Mousebook |
|
|
|
|
|
|
|
|
| MouseIndelDB |
|
|
|
|
|
|
|
|
| NCBI Resources |
|
|
|
|
|
|
|
|
| NIASGBdb |
|
|
|
|
|
|
|
|
|
| PAIR |
|
|
|
|
|
|
|
|
|
| ParameciumDB |
|
|
|
|
|
|
|
|
| Pathema |
|
|
|
|
|
|
|
|
|
| Pathway Commons |
|
|
|
|
|
|
|
|
| PeroxisomeDB |
|
|
|
|
|
|
|
|
| phEVER |
|
|
|
|
|
|
|
|
|
| phiSITE |
|
|
|
|
|
|
|
|
|
| PhosPhAt |
|
|
|
|
|
|
|
|
|
| PhylomeDB v3.0 |
|
|
|
|
|
|
|
|
| Plant MicroRNA
Database |
|
|
|
|
|
|
|
| Plant Resistance Genes Database |
|
|
|
|
|
|
|
| PlantTFDB 2.0 |
|
|
|
|
|
|
|
|
| PlnTFDB |
|
|
|
|
|
|
|
|
|
| PmiRKB |
|
|
|
|
|
|
|
|
|
| PrimerBank |
|
|
|
|
|
|
|
|
| Pseudomonas Genome
Database |
|
|
|
|
|
|
|
| REDfly |
|
|
|
|
|
|
|
|
|
| RegPrecise |
|
|
|
|
|
|
|
|
|
| RegulonDB |
|
|
|
|
|
|
|
|
| RiceXPro |
|
|
|
|
|
|
|
|
|
| RIKEN integrated
database of mammals |
|
|
|
|
|
|
| SALAD |
|
|
|
|
|
|
|
|
|
| SCLD |
|
|
|
|
|
|
|
|
|
| SGD |
|
|
|
|
|
|
|
|
|
| Sol Genomics Network |
|
|
|
|
|
|
|
| SoyBase |
|
|
|
|
|
|
|
|
|
| The catfish genome database
cBARREL |
|
|
|
|
|
|
| The European Bioinformatics
Institute (EBI) |
|
|
|
|
|
|
| Tomato Functional
Genomics Database |
|
|
|
|
|
|
| TriTrypDB |
|
|
|
|
|
|
|
|
|
| UCSC Genome Browser |
|
|
|
|
|
|
|
| ViralORFeome |
|
|
|
|
|
|
|
|
| ViralZone |
|
|
|
|
|
|
|
|
|
| WormBase |
|
|
|
|
|
|
|
|
| XenBase |
|
|
|
|
|
|
|
|
|
| YEASTRACT |
|
|
|
|
|
|
|
|
| YPA |
|
|
|
|
|
|
|
|
|
| ZFIN |
|
|
|
|
|
|
|
|
|
| Fish |
|
|
|
|
|
|
|
|
|
| DOE Joint Genome Institute
Genome Portal |
|
|
|
|
|
|
| ECR Browser |
|
|
|
|
|
|
|
|
| Ensembl Fugu
Genome Browser |
|
|
|
|
|
|
|
| Ensembl Zebrafish
Genome Browser |
|
|
|
|
|
|
| IMCB - Fugu Genome Project |
|
|
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| UCSC Fugu Genome Browse Getaway |
|
|
|
|
|
|
| Vega Annotation Browser |
|
|
|
|
|
|
|
| ZFIN |
|
|
|
|
|
|
|
|
|
| Fly |
|
|
|
|
|
|
|
|
|
| Berkeley Drosophila Genome
Project |
|
|
|
|
|
|
| BSQA |
|
|
|
|
|
|
|
|
|
| DIANA-microT |
|
|
|
|
|
|
|
|
| DroPNet |
|
|
|
|
|
|
|
|
|
| Drosophila Dnase I footprint
database |
|
|
|
|
|
|
| E-RNAi |
|
|
|
|
|
|
|
|
|
| ECR Browser |
|
|
|
|
|
|
|
|
| Ensembl
Drosophila Genome Browser |
|
|
|
|
|
|
| Ensembl
Mosquito Genome Browser |
|
|
|
|
|
|
| FlyBase |
|
|
|
|
|
|
|
|
|
| GeneMANIA |
|
|
|
|
|
|
|
|
| Genome Surveyor |
|
|
|
|
|
|
|
|
| IMP |
|
|
|
|
|
|
|
|
|
| Interolog/Regulog
Database |
|
|
|
|
|
|
|
| NetAligner |
|
|
|
|
|
|
|
|
|
| PANTHER Tools |
|
|
|
|
|
|
|
|
| REDfly |
|
|
|
|
|
|
|
|
|
| SteinerNet |
|
|
|
|
|
|
|
|
|
| Target
Explorer |
|
|
|
|
|
|
|
|
| TFM-Explorer |
|
|
|
|
|
|
|
|
| The GRID - General
Repository for Interaction Datasets |
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| UCSC Fruitfly Genome Browser Getaway |
|
|
|
|
|
|
| YOGY |
|
|
|
|
|
|
|
|
|
| General
Resources |
|
|
|
|
|
|
|
|
| A Quick Guide to Sequened Genomes |
|
|
|
|
|
|
| Codon Usage Database |
|
|
|
|
|
|
|
|
| CodonO |
|
|
|
|
|
|
|
|
|
| dbEST |
|
|
|
|
|
|
|
|
|
| DOE Joint Genome Institute
Genome Portal |
|
|
|
|
|
|
| Ensembl Genome Browser |
|
|
|
|
|
|
|
| Entrez Genomes |
|
|
|
|
|
|
|
|
| euGenes: Genomic
Information for Eucaryotic Organisms |
|
|
|
|
|
| GCUA: Graphical Codon Usage
Analyser |
|
|
|
|
|
|
| Gen Set Builder |
|
|
|
|
|
|
|
|
| Genome
Centres and Databases |
|
|
|
|
|
|
|
| GOLD |
|
|
|
|
|
|
|
|
|
| iCE
- internet Contig Explorer |
|
|
|
|
|
|
|
| Intergr8 |
|
|
|
|
|
|
|
|
|
| InterProScan |
|
|
|
|
|
|
|
|
| ISC
Large-scale Sequencing Project Database |
|
|
|
|
|
|
| Jcat |
|
|
|
|
|
|
|
|
|
| mGene.web |
|
|
|
|
|
|
|
|
| MIPS |
|
|
|
|
|
|
|
|
|
| NCBI
Assembly Archive |
|
|
|
|
|
|
|
| NCBI Taxonomy
Database |
|
|
|
|
|
|
|
| NEWT |
|
|
|
|
|
|
|
|
|
| OligoArray |
|
|
|
|
|
|
|
|
|
| Ontology Lookup Services |
|
|
|
|
|
|
|
| PhenomicDB |
|
|
|
|
|
|
|
|
| PhyloPat |
|
|
|
|
|
|
|
|
|
| The
Sequence Ontology Project |
|
|
|
|
|
|
|
| THREaD Mapper
Studio |
|
|
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| WEGO |
|
|
|
|
|
|
|
|
|
| Microbes |
|
|
|
|
|
|
|
|
|
| AHMII |
|
|
|
|
|
|
|
|
|
| AMIGene |
|
|
|
|
|
|
|
|
|
| antiSMASH |
|
|
|
|
|
|
|
|
| ATIVS |
|
|
|
|
|
|
|
|
|
| BAGEL |
|
|
|
|
|
|
|
|
|
| BAGEL2 |
|
|
|
|
|
|
|
|
|
| BAGET |
|
|
|
|
|
|
|
|
|
| BASys |
|
|
|
|
|
|
|
|
|
| BROP |
|
|
|
|
|
|
|
|
|
| CGView
Server |
|
|
|
|
|
|
|
|
| CMR |
|
|
|
|
|
|
|
|
|
| CPA - Comparative Pathway Analyzer |
|
|
|
|
|
|
| CRISPRcompar |
|
|
|
|
|
|
|
|
| CRISPRFinder |
|
|
|
|
|
|
|
|
| CVTree |
|
|
|
|
|
|
|
|
|
| DOE Joint Genome Institute
Genome Portal |
|
|
|
|
|
|
| E. Coli Genome Project |
|
|
|
|
|
|
|
| EnteriX |
|
|
|
|
|
|
|
|
|
| G-language GAE |
|
|
|
|
|
|
|
|
| GeConT
2 |
|
|
|
|
|
|
|
|
|
| GeneDB |
|
|
|
|
|
|
|
|
|
| Hhomp |
|
|
|
|
|
|
|
|
|
| In Silico experiments with
complete bacterial genomes |
|
|
|
|
|
| Insignia |
|
|
|
|
|
|
|
|
|
| Integrated Microbial Genomes
(IMG) |
|
|
|
|
|
|
| IslandPath |
|
|
|
|
|
|
|
|
|
| jpHMM |
|
|
|
|
|
|
|
|
|
| JProGo |
|
|
|
|
|
|
|
|
|
| JVirGel |
|
|
|
|
|
|
|
|
|
| METAGENassist |
|
|
|
|
|
|
|
|
| mGenomeSubtractor |
|
|
|
|
|
|
|
|
| MGIP |
|
|
|
|
|
|
|
|
|
| Microbe Browser |
|
|
|
|
|
|
|
|
| Microbial Genome Viewer |
|
|
|
|
|
|
|
| MicroFootPrinter |
|
|
|
|
|
|
|
|
| MIRU-VNTRplus |
|
|
|
|
|
|
|
|
| MLST |
|
|
|
|
|
|
|
|
|
| MobilomeFINDER |
|
|
|
|
|
|
|
|
| NAST |
|
|
|
|
|
|
|
|
|
| NetAligner |
|
|
|
|
|
|
|
|
|
| NRPSpredictor2 |
|
|
|
|
|
|
|
|
| PHAST |
|
|
|
|
|
|
|
|
|
| Phydbac 2 |
|
|
|
|
|
|
|
|
|
| ProdoNet |
|
|
|
|
|
|
|
|
|
| PROFtmb |
|
|
|
|
|
|
|
|
|
| Projector
2 |
|
|
|
|
|
|
|
|
| PseudoCAP |
|
|
|
|
|
|
|
|
| Pseudomonas Genome Project |
|
|
|
|
|
|
|
| PSORTdb |
|
|
|
|
|
|
|
|
|
| RegAnalyst |
|
|
|
|
|
|
|
|
| RegPredict |
|
|
|
|
|
|
|
|
| REPK |
|
|
|
|
|
|
|
|
|
| RNApredator |
|
|
|
|
|
|
|
|
| sgTarget |
|
|
|
|
|
|
|
|
|
| TargetRNA |
|
|
|
|
|
|
|
|
|
| TiCo |
|
|
|
|
|
|
|
|
|
| UM-PPS |
|
|
|
|
|
|
|
|
|
| VIGOR |
|
|
|
|
|
|
|
|
|
| VirHostnet |
|
|
|
|
|
|
|
|
| Virus
Genotyping Tools |
|
|
|
|
|
|
|
| YOGY |
|
|
|
|
|
|
|
|
|
| Mouse
and Rat |
|
|
|
|
|
|
|
|
| Allen Brain Atlas |
|
|
|
|
|
|
|
|
| ARTS |
|
|
|
|
|
|
|
|
|
| Asmodeler |
|
|
|
|
|
|
|
|
|
| BEARR |
|
|
|
|
|
|
|
|
|
| ECR Browser |
|
|
|
|
|
|
|
|
| Ensembl
Mouse Genome Browser |
|
|
|
|
|
|
|
| Ensembl Rat
Genome Browser |
|
|
|
|
|
|
|
| FANTOM -
Functional Annotation of Mouse |
|
|
|
|
|
|
| GeneHub-GEPIS |
|
|
|
|
|
|
|
|
| GeneMANIA |
|
|
|
|
|
|
|
|
| HomozygosityMapper |
|
|
|
|
|
|
|
|
| Idiographica |
|
|
|
|
|
|
|
|
| IMP |
|
|
|
|
|
|
|
|
|
| LOCATE |
|
|
|
|
|
|
|
|
|
| Mammlian Gene Collection |
|
|
|
|
|
|
|
| Mouse
Atlas of Gene Expression |
|
|
|
|
|
|
|
| Mouse
Genetics: Concepts and Applications |
|
|
|
|
|
|
| Mouse Resources |
|
|
|
|
|
|
|
|
| NCBI Human DNA
Reference Sequence |
|
|
|
|
|
|
| NetAligner |
|
|
|
|
|
|
|
|
|
| PANTHER Tools |
|
|
|
|
|
|
|
|
| PhenoHM |
|
|
|
|
|
|
|
|
|
| PosMed |
|
|
|
|
|
|
|
|
|
| Primer Z |
|
|
|
|
|
|
|
|
|
| Rat Genome Database (RGD) |
|
|
|
|
|
|
|
| RSSsite |
|
|
|
|
|
|
|
|
|
| SOURCE |
|
|
|
|
|
|
|
|
|
| SteinerNet |
|
|
|
|
|
|
|
|
|
| TCAG: The Centre for Applied
Genomics, Toronto |
|
|
|
|
|
| TFBScluster |
|
|
|
|
|
|
|
|
| TFM-Explorer |
|
|
|
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| UCSC Mouse Genome Browser Getaway |
|
|
|
|
|
|
| UCSC Rat Genome Browser Getaway |
|
|
|
|
|
|
| VARIANT |
|
|
|
|
|
|
|
|
|
| Vega Annotation Browser |
|
|
|
|
|
|
|
| waviCGH |
|
|
|
|
|
|
|
|
|
| Whole Mouse Catalog |
|
|
|
|
|
|
|
|
| YOGY |
|
|
|
|
|
|
|
|
|
| Other
Organisms |
|
|
|
|
|
|
|
|
| AHMII |
|
|
|
|
|
|
|
|
|
| Daphnia Genomics
Consortium |
|
|
|
|
|
|
|
| DOE Joint Genome Institute
Genome Portal |
|
|
|
|
|
|
| E-RNAi |
|
|
|
|
|
|
|
|
|
| Ensembl
Genome Browser |
|
|
|
|
|
|
|
| FluGenome |
|
|
|
|
|
|
|
|
| Geno2pheno |
|
|
|
|
|
|
|
|
| Genotyping - NCBI |
|
|
|
|
|
|
|
|
| Influenza
Virus Resources |
|
|
|
|
|
|
|
| jpHMM |
|
|
|
|
|
|
|
|
|
| MIPS |
|
|
|
|
|
|
|
|
|
| NCBI Influenza Virus Sequence Annotation Tool |
|
|
|
|
|
| Parasite-Genome |
|
|
|
|
|
|
|
|
| PartiGeneDB |
|
|
|
|
|
|
|
|
| Poxvirus Bioinformatics
Resource Center |
|
|
|
|
|
|
| siVirus |
|
|
|
|
|
|
|
|
|
| TCAG: The Centre for Applied
Genomics, Toronto |
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| UCSC SARS Genome Browser Getaway |
|
|
|
|
|
|
| Viral Bioinformatics |
|
|
|
|
|
|
|
|
| Other
Vertebrates |
|
|
|
|
|
|
|
|
| Cancer Genome Anatomy
Project |
|
|
|
|
|
|
|
| ECR Browser |
|
|
|
|
|
|
|
|
| Ensembl Human
Genome Project |
|
|
|
|
|
|
|
| HomozygosityMapper |
|
|
|
|
|
|
|
|
| Mammlian Gene Collection |
|
|
|
|
|
|
|
| SOURCE |
|
|
|
|
|
|
|
|
|
| TCAG: The Centre for Applied
Genomics, Toronto |
|
|
|
|
|
| TFM-Explorer |
|
|
|
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| UCSC Human Genome Browser Getaway |
|
|
|
|
|
|
| Vega Annotation Browser |
|
|
|
|
|
|
|
| Plants |
|
|
|
|
|
|
|
|
|
| ACT |
|
|
|
|
|
|
|
|
|
| agriGO |
|
|
|
|
|
|
|
|
|
| Arabidopsis
Ensembl |
|
|
|
|
|
|
|
|
| AthaMap |
|
|
|
|
|
|
|
|
|
| Blast2GO |
|
|
|
|
|
|
|
|
|
| DATF |
|
|
|
|
|
|
|
|
|
| DOE Joint Genome Institute
Genome Portal |
|
|
|
|
|
|
| DRTF |
|
|
|
|
|
|
|
|
|
| EUGENE«HOM |
|
|
|
|
|
|
|
|
| GeMprospector |
|
|
|
|
|
|
|
|
| GeneCAT |
|
|
|
|
|
|
|
|
|
| GeneMANIA |
|
|
|
|
|
|
|
|
| GeneSeqer |
|
|
|
|
|
|
|
|
|
| Genome Database for Rosaceae |
|
|
|
|
|
|
|
| Interolog/Regulog
Database |
|
|
|
|
|
|
|
| LTR-Finder |
|
|
|
|
|
|
|
|
|
| Maize Genetics and Genomics
Database |
|
|
|
|
|
|
| MIPS |
|
|
|
|
|
|
|
|
|
| NetAligner |
|
|
|
|
|
|
|
|
|
| PLAN2L |
|
|
|
|
|
|
|
|
|
| PLecDom |
|
|
|
|
|
|
|
|
|
| PlnTFDB |
|
|
|
|
|
|
|
|
|
| PosMed |
|
|
|
|
|
|
|
|
|
| PREP Suite |
|
|
|
|
|
|
|
|
|
| PRI-CAT |
|
|
|
|
|
|
|
|
|
| psRNATarget |
|
|
|
|
|
|
|
|
| psRobot |
|
|
|
|
|
|
|
|
|
| pssRNAMiner |
|
|
|
|
|
|
|
|
| The Arabidopsis
Information Resource (TAIR) |
|
|
|
|
|
|
| WhETS |
|
|
|
|
|
|
|
|
|
| YOGY |
|
|
|
|
|
|
|
|
|
| Worm |
|
|
|
|
|
|
|
|
|
| C. Elegans
Gene Knockout Consortium |
|
|
|
|
|
|
| DIANA-microT |
|
|
|
|
|
|
|
|
| Ensembl
C.elegans Genome Browser |
|
|
|
|
|
|
| GeneMANIA |
|
|
|
|
|
|
|
|
| IMP |
|
|
|
|
|
|
|
|
|
| Interolog/Regulog
Database |
|
|
|
|
|
|
|
| NetAligner |
|
|
|
|
|
|
|
|
|
| SteinerNet |
|
|
|
|
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| UCSC C. Briggsae Genome Browser Gateway |
|
|
|
|
|
|
| UCSC C. Elegans Genome Browser Gateway |
|
|
|
|
|
|
| WormBase |
|
|
|
|
|
|
|
|
| Yeast |
|
|
|
|
|
|
|
|
|
| AHMII |
|
|
|
|
|
|
|
|
|
| E-RNAi |
|
|
|
|
|
|
|
|
|
| GeneMANIA |
|
|
|
|
|
|
|
|
| IMP |
|
|
|
|
|
|
|
|
|
| Interolog/Regulog
Database |
|
|
|
|
|
|
|
| MIPS |
|
|
|
|
|
|
|
|
|
| MYBS |
|
|
|
|
|
|
|
|
|
| NCBI Human DNA
Reference Sequence |
|
|
|
|
|
|
| NetAligner |
|
|
|
|
|
|
|
|
|
| RF-DYMHC |
|
|
|
|
|
|
|
|
|
| rMotif |
|
|
|
|
|
|
|
|
|
| S. Pompe
genome |
|
|
|
|
|
|
|
|
| SCMD |
|
|
|
|
|
|
|
|
|
| SGD |
|
|
|
|
|
|
|
|
|
| SteinerNet |
|
|
|
|
|
|
|
|
|
| T-profiler |
|
|
|
|
|
|
|
|
|
| The GRID - General
Repository for Interaction Datasets |
|
|
|
|
|
| Virtual Library--Yeast |
|
|
|
|
|
|
|
|
| Yeast
MetaboliNER |
|
|
|
|
|
|
|
|
| Yeast
Resource Center |
|
|
|
|
|
|
|
|
| YOGY |
|
|
|
|
|
|
|
|
|
|
| Other
Molecules |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Carbohydrates |
|
|
|
|
|
|
|
|
| GlycoViewer |
|
|
|
|
|
|
|
|
| GlyNest and CASPER |
|
|
|
|
|
|
|
|
| Glyprot |
|
|
|
|
|
|
|
|
|
| NetOGlyc
Prediction Server |
|
|
|
|
|
|
|
| SEARCHGTr |
|
|
|
|
|
|
|
|
| Compounds |
|
|
|
|
|
|
|
|
| ARISTO |
|
|
|
|
|
|
|
|
|
| ChemSynthesis |
|
|
|
|
|
|
|
|
| DRAR-CPI |
|
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|
|
|
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|
|
| e-LEA3D |
|
|
|
|
|
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|
|
| Frog2 |
|
|
|
|
|
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|
|
| IC50-to-Ki |
|
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|
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| MetalDetector |
|
|
|
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|
|
| pepMMsMIMIC |
|
|
|
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|
|
| PharmMapper |
|
|
|
|
|
|
|
|
| PubChem
BioAssay Service |
|
|
|
|
|
|
|
| SePreSA |
|
|
|
|
|
|
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|
|
| SIMCOMP/SUBCOMP |
|
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| SuperPred |
|
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| UM-PPS |
|
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| wwLigCSRre |
|
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| ZINCPharmer |
|
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| Databases |
|
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|
|
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|
| BioDrugScreen |
|
|
|
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| CAMP |
|
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| CancerResource |
|
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| CheBI |
|
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|
|
| ChemProt |
|
|
|
|
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|
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|
|
| DrugBank 3.0 |
|
|
|
|
|
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|
|
| EDULISS |
|
|
|
|
|
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|
|
| EMDataBank.org |
|
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| FragmentStore |
|
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|
|
| GlycomeDB |
|
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|
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|
|
| Gypsy Database (GyDB) |
|
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|
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|
|
| HIT |
|
|
|
|
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|
|
| LAHEDES |
|
|
|
|
|
|
|
|
|
| NCBI Resources |
|
|
|
|
|
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|
|
| PROMISCUOUS |
|
|
|
|
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|
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| Protegen |
|
|
|
|
|
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|
|
| PubChem |
|
|
|
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| SMPDB |
|
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| SuperSweet |
|
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| T3DB |
|
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| TADB |
|
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|
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| The BRENDA Tissue
Ontology (BTO) |
|
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|
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|
|
| The Comparative Toxicogenomics
Database |
|
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|
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|
|
| The European Bioinformatics
Institute (EBI) |
|
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|
|
| TTD |
|
|
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| VnD |
|
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| Enzymes |
|
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|
| dbCAN |
|
|
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|
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| LAHEDES |
|
|
|
|
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| Metabolites |
|
|
|
|
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|
|
| ARISTO |
|
|
|
|
|
|
|
|
|
| BioMet Toolbox |
|
|
|
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|
|
| FMM |
|
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| GLAMM |
|
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| HMDB |
|
|
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|
| LIPID MAPS |
|
|
|
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|
|
| MassTRIX |
|
|
|
|
|
|
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|
|
| MetaboAnalyst 2.0 |
|
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|
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|
|
| MetaPath Online |
|
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|
|
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|
|
| MetExplore |
|
|
|
|
|
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|
|
| MSEA |
|
|
|
|
|
|
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|
|
| PubChem
BioAssay Service |
|
|
|
|
|
|
|
| SIMCOMP/SUBCOMP |
|
|
|
|
|
|
|
|
| YEAST
MetaboliNER |
|
|
|
|
|
|
|
|
| Peptides |
|
|
|
|
|
|
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|
|
| AVPpred |
|
|
|
|
|
|
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|
|
| Small
Molecules |
|
|
|
|
|
|
|
|
| ARISTO |
|
|
|
|
|
|
|
|
|
| ChemMine Tools |
|
|
|
|
|
|
|
|
| DrugBank |
|
|
|
|
|
|
|
|
|
| eMolecules |
|
|
|
|
|
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|
|
| FAF-Drugs |
|
|
|
|
|
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|
|
| Fpocket |
|
|
|
|
|
|
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|
|
| Frog |
|
|
|
|
|
|
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|
|
| Frog2 |
|
|
|
|
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|
|
| IC50-to-Ki |
|
|
|
|
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| idTarget |
|
|
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|
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|
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| PepSite |
|
|
|
|
|
|
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|
|
| PharmMapper |
|
|
|
|
|
|
|
|
| PubChem
BioAssay Service |
|
|
|
|
|
|
|
| SIMCOMP/SUBCOMP |
|
|
|
|
|
|
|
|
| SwissDock |
|
|
|
|
|
|
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|
|
| TarFisDock |
|
|
|
|
|
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|
|
| wwLigCSRre |
|
|
|
|
|
|
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|
|
| Protein |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
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|
|
| 2-D
Structure Prediction |
|
|
|
|
|
|
|
| BhairPred |
|
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| Bioverse |
|
|
|
|
|
|
|
|
|
| BOMP |
|
|
|
|
|
|
|
|
|
| CBS DAS protein
viewer |
|
|
|
|
|
|
|
| COILS |
|
|
|
|
|
|
|
|
|
| DICHROWEB |
|
|
|
|
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|
| DisEMBL |
|
|
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|
|
| DSP |
|
|
|
|
|
|
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|
|
| DSSPcont |
|
|
|
|
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|
| ENDscript |
|
|
|
|
|
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|
|
| EVA |
|
|
|
|
|
|
|
|
|
| GlobPlot |
|
|
|
|
|
|
|
|
|
| Hhrep |
|
|
|
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| iPDA |
|
|
|
|
|
|
|
|
|
| Jpred 3 |
|
|
|
|
|
|
|
|
|
| Localizome |
|
|
|
|
|
|
|
|
| LocalMove |
|
|
|
|
|
|
|
|
| Meta-BASIC |
|
|
|
|
|
|
|
|
| MIGenAS Toolkit |
|
|
|
|
|
|
|
|
| MPI Toolkit |
|
|
|
|
|
|
|
|
| NetCSSP |
|
|
|
|
|
|
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|
|
| NORSp |
|
|
|
|
|
|
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|
|
| OpenHUSAR |
|
|
|
|
|
|
|
|
| Pcons.net |
|
|
|
|
|
|
|
|
|
| Phobius |
|
|
|
|
|
|
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|
|
| PONGO |
|
|
|
|
|
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|
|
| PRALINE |
|
|
|
|
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|
|
| PrDOS |
|
|
|
|
|
|
|
|
|
| PRED-TMBB |
|
|
|
|
|
|
|
|
| PredictProtein |
|
|
|
|
|
|
|
|
| PROFEAT |
|
|
|
|
|
|
|
|
|
| PROFtmb |
|
|
|
|
|
|
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|
|
| ProSMoS |
|
|
|
|
|
|
|
|
|
| PROSPECT-PSPP |
|
|
|
|
|
|
|
|
| Protinfo |
|
|
|
|
|
|
|
|
|
| PSA |
|
|
|
|
|
|
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|
|
| PSIPRED |
|
|
|
|
|
|
|
|
|
| RbDe |
|
|
|
|
|
|
|
|
|
| SAPS - Statistical
Analysis of Protein Sequences |
|
|
|
|
|
| SCRATCH |
|
|
|
|
|
|
|
|
|
| Servers at
University College London |
|
|
|
|
|
|
| Spritz |
|
|
|
|
|
|
|
|
|
| SSEP |
|
|
|
|
|
|
|
|
|
| STRIDE |
|
|
|
|
|
|
|
|
|
| SVMtm |
|
|
|
|
|
|
|
|
|
| TMBETA-NET |
|
|
|
|
|
|
|
|
| TMH
Benchmark |
|
|
|
|
|
|
|
|
| Tmpred |
|
|
|
|
|
|
|
|
|
| TOPCONS |
|
|
|
|
|
|
|
|
|
| TRAMPLE |
|
|
|
|
|
|
|
|
|
| transFold |
|
|
|
|
|
|
|
|
|
| VADAR |
|
|
|
|
|
|
|
|
|
| VAST |
|
|
|
|
|
|
|
|
|
| xREI |
|
|
|
|
|
|
|
|
|
| 3-D
Structural Features |
|
|
|
|
|
|
|
|
| 3D-Partner |
|
|
|
|
|
|
|
|
| 3DLigandSite |
|
|
|
|
|
|
|
|
| 3dLOGO |
|
|
|
|
|
|
|
|
|
| 3DTF |
|
|
|
|
|
|
|
|
|
| 3V |
|
|
|
|
|
|
|
|
|
| ALADYN |
|
|
|
|
|
|
|
|
|
| AnalyCys |
|
|
|
|
|
|
|
|
|
| ANCHOR |
|
|
|
|
|
|
|
|
|
| Andrej Sali
Lab |
|
|
|
|
|
|
|
|
| ArchPred |
|
|
|
|
|
|
|
|
|
| BhairPred |
|
|
|
|
|
|
|
|
|
| BioInfo3D |
|
|
|
|
|
|
|
|
|
| BioMe |
|
|
|
|
|
|
|
|
|
| BSDD |
|
|
|
|
|
|
|
|
|
| CASTp |
|
|
|
|
|
|
|
|
|
| CCRPX |
|
|
|
|
|
|
|
|
|
| CHC_FIND |
|
|
|
|
|
|
|
|
|
| CMWeb |
|
|
|
|
|
|
|
|
|
| COFACTOR |
|
|
|
|
|
|
|
|
|
| COLORADO-3D |
|
|
|
|
|
|
|
|
| ConSeq |
|
|
|
|
|
|
|
|
|
| ConSurf |
|
|
|
|
|
|
|
|
|
| Cpred |
|
|
|
|
|
|
|
|
|
| Cspritz |
|
|
|
|
|
|
|
|
|
| DBCP |
|
|
|
|
|
|
|
|
|
| DR.BIND |
|
|
|
|
|
|
|
|
|
| eF-seek |
|
|
|
|
|
|
|
|
|
| ET report
Maker |
|
|
|
|
|
|
|
|
| EVAcon |
|
|
|
|
|
|
|
|
|
| FeatureMap3D |
|
|
|
|
|
|
|
|
| FF -
Fragment Finder |
|
|
|
|
|
|
|
|
| FoldMiner and LOCK 2 |
|
|
|
|
|
|
|
|
| Fpocket |
|
|
|
|
|
|
|
|
|
| Gene3D |
|
|
|
|
|
|
|
|
|
| GlobPlot |
|
|
|
|
|
|
|
|
|
| Glyprot |
|
|
|
|
|
|
|
|
|
| H++ |
|
|
|
|
|
|
|
|
|
| Harmony |
|
|
|
|
|
|
|
|
|
| I2I-SiteEngine |
|
|
|
|
|
|
|
|
| ICGEBnet Protein Tools |
|
|
|
|
|
|
|
| iMOT |
|
|
|
|
|
|
|
|
|
| IntFOLD |
|
|
|
|
|
|
|
|
|
| KFC Server |
|
|
|
|
|
|
|
|
|
| KINARI-Web |
|
|
|
|
|
|
|
|
| KinDOCK |
|
|
|
|
|
|
|
|
|
| KNOTS |
|
|
|
|
|
|
|
|
|
| MAPPIS |
|
|
|
|
|
|
|
|
|
| MCPep |
|
|
|
|
|
|
|
|
|
| MolAxis |
|
|
|
|
|
|
|
|
|
| MOLEonline 2.0 |
|
|
|
|
|
|
|
|
| MolLoc |
|
|
|
|
|
|
|
|
|
| MolSurfer |
|
|
|
|
|
|
|
|
|
| Mplot |
|
|
|
|
|
|
|
|
|
| MultiBind |
|
|
|
|
|
|
|
|
|
| Nncon |
|
|
|
|
|
|
|
|
|
| NRSAS |
|
|
|
|
|
|
|
|
|
| Paratome |
|
|
|
|
|
|
|
|
|
| PAST |
|
|
|
|
|
|
|
|
|
| PBSword |
|
|
|
|
|
|
|
|
|
| PCFamily |
|
|
|
|
|
|
|
|
|
| PDB2PQR Server |
|
|
|
|
|
|
|
|
| pdbFun |
|
|
|
|
|
|
|
|
|
| PDBSiteScan |
|
|
|
|
|
|
|
|
| PDB_Hydro |
|
|
|
|
|
|
|
|
| PFP |
|
|
|
|
|
|
|
|
|
| PHEMTO |
|
|
|
|
|
|
|
|
|
| PHEPS |
|
|
|
|
|
|
|
|
|
| Phosfinder |
|
|
|
|
|
|
|
|
| PI2PE |
|
|
|
|
|
|
|
|
|
| PIC |
|
|
|
|
|
|
|
|
|
| PINTS |
|
|
|
|
|
|
|
|
|
| pKNOT-v2 |
|
|
|
|
|
|
|
|
|
| PocketQuery |
|
|
|
|
|
|
|
|
| POLYVIEW-MM |
|
|
|
|
|
|
|
|
| POPS |
|
|
|
|
|
|
|
|
|
| PreBI |
|
|
|
|
|
|
|
|
|
| PREDITOR |
|
|
|
|
|
|
|
|
|
| ProBiS |
|
|
|
|
|
|
|
|
|
| PROFEAT |
|
|
|
|
|
|
|
|
|
| ProFunc |
|
|
|
|
|
|
|
|
|
| ProKware |
|
|
|
|
|
|
|
|
|
| ProMateus |
|
|
|
|
|
|
|
|
| ProSAT2 |
|
|
|
|
|
|
|
|
|
| ProSMoS |
|
|
|
|
|
|
|
|
|
| Protein Dipole
Server |
|
|
|
|
|
|
|
|
| Protein Frustratometer |
|
|
|
|
|
|
|
| Protemot |
|
|
|
|
|
|
|
|
|
| RASMOS-3D PRO |
|
|
|
|
|
|
|
|
| RCI |
|
|
|
|
|
|
|
|
|
| ReadOut |
|
|
|
|
|
|
|
|
|
| RHYTHM |
|
|
|
|
|
|
|
|
|
| SBSPKS |
|
|
|
|
|
|
|
|
|
| Scit |
|
|
|
|
|
|
|
|
|
| SCRATCH |
|
|
|
|
|
|
|
|
|
| SDM |
|
|
|
|
|
|
|
|
|
| seeMotif |
|
|
|
|
|
|
|
|
|
| Servers at
University College London |
|
|
|
|
|
|
| SiteEngine |
|
|
|
|
|
|
|
|
|
| SITEHOUND-web |
|
|
|
|
|
|
|
|
| SLITHER |
|
|
|
|
|
|
|
|
|
| SMAP-WS |
|
|
|
|
|
|
|
|
|
| SplitPocket |
|
|
|
|
|
|
|
|
| SPRITE |
|
|
|
|
|
|
|
|
|
| Sride |
|
|
|
|
|
|
|
|
|
| STING
Millenium |
|
|
|
|
|
|
|
|
| StSNP |
|
|
|
|
|
|
|
|
|
| SuperLooper |
|
|
|
|
|
|
|
|
| SWAKK |
|
|
|
|
|
|
|
|
|
| TopMatch |
|
|
|
|
|
|
|
|
|
| WebFEATURE |
|
|
|
|
|
|
|
|
| 3-D
Structure Comparison |
|
|
|
|
|
|
|
| 3D-Fun |
|
|
|
|
|
|
|
|
|
| 3DLigandSite |
|
|
|
|
|
|
|
|
| 3dLOGO |
|
|
|
|
|
|
|
|
|
| 3DSS |
|
|
|
|
|
|
|
|
|
| (@)TOME-2 |
|
|
|
|
|
|
|
|
| ALADYN |
|
|
|
|
|
|
|
|
|
| Andrej Sali
Lab |
|
|
|
|
|
|
|
|
| ASSAM |
|
|
|
|
|
|
|
|
|
| BioInfo3D |
|
|
|
|
|
|
|
|
|
| CATH |
|
|
|
|
|
|
|
|
|
| CE-MC |
|
|
|
|
|
|
|
|
|
| CHC_FIND |
|
|
|
|
|
|
|
|
|
| CLICK |
|
|
|
|
|
|
|
|
|
| COFACTOR |
|
|
|
|
|
|
|
|
|
| Combinatorial Extension of
the Optimal Path |
|
|
|
|
|
|
| ConPlex |
|
|
|
|
|
|
|
|
|
| COPS |
|
|
|
|
|
|
|
|
|
| CSA |
|
|
|
|
|
|
|
|
|
| Dali
server |
|
|
|
|
|
|
|
|
|
| DBALi |
|
|
|
|
|
|
|
|
|
| deconSTRUCT |
|
|
|
|
|
|
|
|
| EBI Tools |
|
|
|
|
|
|
|
|
|
| eF-seek |
|
|
|
|
|
|
|
|
|
| fastSCOP |
|
|
|
|
|
|
|
|
|
| FATCAT |
|
|
|
|
|
|
|
|
|
| firestar |
|
|
|
|
|
|
|
|
|
| FoldMiner and LOCK 2 |
|
|
|
|
|
|
|
|
| Fpocket |
|
|
|
|
|
|
|
|
|
| GIS |
|
|
|
|
|
|
|
|
|
| Hhpred |
|
|
|
|
|
|
|
|
|
| HorA |
|
|
|
|
|
|
|
|
|
| iMOT |
|
|
|
|
|
|
|
|
|
| iPBA |
|
|
|
|
|
|
|
|
|
| iSARST |
|
|
|
|
|
|
|
|
|
| JEvTrace |
|
|
|
|
|
|
|
|
|
| MarkUs |
|
|
|
|
|
|
|
|
|
| MATRAS |
|
|
|
|
|
|
|
|
|
| MolLoc |
|
|
|
|
|
|
|
|
|
| OPAAS |
|
|
|
|
|
|
|
|
|
| PAST |
|
|
|
|
|
|
|
|
|
| PBE |
|
|
|
|
|
|
|
|
|
| PBSword |
|
|
|
|
|
|
|
|
|
| PCFamily |
|
|
|
|
|
|
|
|
|
| pdbFun |
|
|
|
|
|
|
|
|
|
| pepMMsMIMIC |
|
|
|
|
|
|
|
|
| PINTS |
|
|
|
|
|
|
|
|
|
| PISCES |
|
|
|
|
|
|
|
|
|
| ProBiS |
|
|
|
|
|
|
|
|
|
| ProCKSI |
|
|
|
|
|
|
|
|
|
| ProSMoS |
|
|
|
|
|
|
|
|
|
| ProteinDBS |
|
|
|
|
|
|
|
|
| QSCOP -
BLAST |
|
|
|
|
|
|
|
|
| RAPIDO |
|
|
|
|
|
|
|
|
|
| SA-Search |
|
|
|
|
|
|
|
|
|
| SALAMI |
|
|
|
|
|
|
|
|
|
| SARA |
|
|
|
|
|
|
|
|
|
| SCOP |
|
|
|
|
|
|
|
|
|
| SCR_FIND |
|
|
|
|
|
|
|
|
|
| SEQATOMS |
|
|
|
|
|
|
|
|
| SMAP-WS |
|
|
|
|
|
|
|
|
|
| STING
Millenium |
|
|
|
|
|
|
|
|
| STRAP |
|
|
|
|
|
|
|
|
|
| Super |
|
|
|
|
|
|
|
|
|
| Superimpose |
|
|
|
|
|
|
|
|
| SuperPose |
|
|
|
|
|
|
|
|
|
| T-COFFEE |
|
|
|
|
|
|
|
|
|
| TopMatch |
|
|
|
|
|
|
|
|
|
| VAST |
|
|
|
|
|
|
|
|
|
| wwLigCDRre |
|
|
|
|
|
|
|
|
| 3-D
Structure Prediction |
|
|
|
|
|
|
|
| (PS)2 Protein Structure
Prediction Server |
|
|
|
|
|
|
| 3D-pssm |
|
|
|
|
|
|
|
|
|
| (@)TOME-2 |
|
|
|
|
|
|
|
|
| Andrej Sali
Lab |
|
|
|
|
|
|
|
|
| AquaSAXS |
|
|
|
|
|
|
|
|
|
| ArchPred |
|
|
|
|
|
|
|
|
|
| Berkeley
Phylogenomics Group |
|
|
|
|
|
|
|
| BhairPred |
|
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| Bioverse |
|
|
|
|
|
|
|
|
|
| CaspR |
|
|
|
|
|
|
|
|
|
| COLORADO-3D |
|
|
|
|
|
|
|
|
| CPHmodels-3.0 |
|
|
|
|
|
|
|
|
| CS23D |
|
|
|
|
|
|
|
|
|
| CSpritz |
|
|
|
|
|
|
|
|
|
| CUPSAT |
|
|
|
|
|
|
|
|
|
| DBCP |
|
|
|
|
|
|
|
|
|
| deconSTRUCT |
|
|
|
|
|
|
|
|
| DIAL |
|
|
|
|
|
|
|
|
|
| DisEMBL |
|
|
|
|
|
|
|
|
|
| EVA |
|
|
|
|
|
|
|
|
|
| FALC-Loop |
|
|
|
|
|
|
|
|
|
| FFAS |
|
|
|
|
|
|
|
|
|
| FoldX |
|
|
|
|
|
|
|
|
|
| FoXS |
|
|
|
|
|
|
|
|
|
| GalaxyWEB |
|
|
|
|
|
|
|
|
| GeNMR |
|
|
|
|
|
|
|
|
|
| Harmony |
|
|
|
|
|
|
|
|
|
| HHpred |
|
|
|
|
|
|
|
|
|
| I-Mutant2.0 |
|
|
|
|
|
|
|
|
| ICGEBnet Protein Tools |
|
|
|
|
|
|
|
| IntFOLD |
|
|
|
|
|
|
|
|
|
| iPDA |
|
|
|
|
|
|
|
|
|
| KoBaMIN |
|
|
|
|
|
|
|
|
|
| KOSMOS |
|
|
|
|
|
|
|
|
|
| LocalMove |
|
|
|
|
|
|
|
|
| M4T |
|
|
|
|
|
|
|
|
|
| MIGenAS Toolkit |
|
|
|
|
|
|
|
|
| Modeller |
|
|
|
|
|
|
|
|
|
| MODPROPEP |
|
|
|
|
|
|
|
|
| MPI Toolkit |
|
|
|
|
|
|
|
|
| MPlot |
|
|
|
|
|
|
|
|
|
| Multifit |
|
|
|
|
|
|
|
|
|
| NMR Constraints
Analyser |
|
|
|
|
|
|
|
| NMSim |
|
|
|
|
|
|
|
|
|
| NNcon |
|
|
|
|
|
|
|
|
|
| NORSp |
|
|
|
|
|
|
|
|
|
| NQ-Flipper |
|
|
|
|
|
|
|
|
| NRSAS |
|
|
|
|
|
|
|
|
|
| Pcons.net |
|
|
|
|
|
|
|
|
|
| PEP-FOLD |
|
|
|
|
|
|
|
|
|
| PepBuild |
|
|
|
|
|
|
|
|
|
| PepSite |
|
|
|
|
|
|
|
|
|
| PrDOS |
|
|
|
|
|
|
|
|
|
| PREDITOR |
|
|
|
|
|
|
|
|
|
| PredyFlexy |
|
|
|
|
|
|
|
|
| ProSA-web |
|
|
|
|
|
|
|
|
| PROSESS: A Protein Structure
Evaluation Suite and Server |
|
|
|
|
|
| PROSPECT-PSPP |
|
|
|
|
|
|
|
|
| Protinfo |
|
|
|
|
|
|
|
|
|
| PUDGE |
|
|
|
|
|
|
|
|
|
| QMEAN |
|
|
|
|
|
|
|
|
|
| R.E.D. |
|
|
|
|
|
|
|
|
|
| RCI |
|
|
|
|
|
|
|
|
|
| RHYTHM |
|
|
|
|
|
|
|
|
|
| Robetta |
|
|
|
|
|
|
|
|
|
| RosettaAntibody |
|
|
|
|
|
|
|
|
| RosettaBackrub |
|
|
|
|
|
|
|
|
| RosettaDesign |
|
|
|
|
|
|
|
|
| RPBS |
|
|
|
|
|
|
|
|
|
| RPF |
|
|
|
|
|
|
|
|
|
| SABBAC |
|
|
|
|
|
|
|
|
|
| SBSPKS |
|
|
|
|
|
|
|
|
|
| SDPMOD |
|
|
|
|
|
|
|
|
|
| SEPPA |
|
|
|
|
|
|
|
|
|
| Servers at
University College London |
|
|
|
|
|
|
| sgTarget |
|
|
|
|
|
|
|
|
|
| SMOG@ctbp |
|
|
|
|
|
|
|
|
| SNPinfo |
|
|
|
|
|
|
|
|
|
| SPACE |
|
|
|
|
|
|
|
|
|
| Spritz |
|
|
|
|
|
|
|
|
|
| Swiss
Model |
|
|
|
|
|
|
|
|
| Swiss-PdbViewer |
|
|
|
|
|
|
|
|
| VADAR |
|
|
|
|
|
|
|
|
|
| WIWS |
|
|
|
|
|
|
|
|
|
| Wurst |
|
|
|
|
|
|
|
|
|
| 3-D
Structure Retrieval/Viewing |
|
|
|
|
|
|
|
| 3DSS |
|
|
|
|
|
|
|
|
|
| 3Matrix |
|
|
|
|
|
|
|
|
|
| 3Motif |
|
|
|
|
|
|
|
|
|
| BSDD |
|
|
|
|
|
|
|
|
|
| CASTp |
|
|
|
|
|
|
|
|
|
| CATH |
|
|
|
|
|
|
|
|
|
| CBS DAS protein
viewer |
|
|
|
|
|
|
|
| CD-Search |
|
|
|
|
|
|
|
|
|
| Cn3D |
|
|
|
|
|
|
|
|
|
| COLORADO-3D |
|
|
|
|
|
|
|
|
| COPS |
|
|
|
|
|
|
|
|
|
| EINemo |
|
|
|
|
|
|
|
|
|
| ENDscript |
|
|
|
|
|
|
|
|
|
| FeatureMap3D |
|
|
|
|
|
|
|
|
| FISH |
|
|
|
|
|
|
|
|
|
| GRAPE: Graphical
Abstracted Protein Explorer |
|
|
|
|
|
|
| iSARST |
|
|
|
|
|
|
|
|
|
| JEvTrace |
|
|
|
|
|
|
|
|
|
| JOY |
|
|
|
|
|
|
|
|
|
| MinActionPath |
|
|
|
|
|
|
|
|
| MMDB |
|
|
|
|
|
|
|
|
|
| MolMovDB |
|
|
|
|
|
|
|
|
| MolProbity |
|
|
|
|
|
|
|
|
| MONSTER |
|
|
|
|
|
|
|
|
|
| Motif3D |
|
|
|
|
|
|
|
|
|
| MovieMaker |
|
|
|
|
|
|
|
|
| MRS |
|
|
|
|
|
|
|
|
|
| NCBI Structure
Group |
|
|
|
|
|
|
|
|
| NRSAS |
|
|
|
|
|
|
|
|
|
| PMG |
|
|
|
|
|
|
|
|
|
| POLYVIEW-MM |
|
|
|
|
|
|
|
|
| POV-Ray |
|
|
|
|
|
|
|
|
|
| PPG |
|
|
|
|
|
|
|
|
|
| Practical
Structural Databases |
|
|
|
|
|
|
|
| ProCKSI |
|
|
|
|
|
|
|
|
|
| ProKware |
|
|
|
|
|
|
|
|
|
| ProSAT2 |
|
|
|
|
|
|
|
|
|
| ProteinDBS |
|
|
|
|
|
|
|
|
| PVS |
|
|
|
|
|
|
|
|
|
| QSCOP -
BLAST |
|
|
|
|
|
|
|
|
| RasMol |
|
|
|
|
|
|
|
|
|
| RCSB Protein Data Bank |
|
|
|
|
|
|
|
| ReMus |
|
|
|
|
|
|
|
|
|
| RPBS |
|
|
|
|
|
|
|
|
|
| SALAMI |
|
|
|
|
|
|
|
|
|
| SCOP |
|
|
|
|
|
|
|
|
|
| seeMotif |
|
|
|
|
|
|
|
|
|
| SEM |
|
|
|
|
|
|
|
|
|
| SNP@Domain |
|
|
|
|
|
|
|
|
| SuperPose |
|
|
|
|
|
|
|
|
|
| Swiss-pdbViewer |
|
|
|
|
|
|
|
|
| The European Bioinformatics
Institute (EBI) |
|
|
|
|
|
|
| YASARA |
|
|
|
|
|
|
|
|
|
| Annotation
and Function |
|
|
|
|
|
|
|
| 3D-Fun |
|
|
|
|
|
|
|
|
|
| AD-ENM |
|
|
|
|
|
|
|
|
|
| ANNIE |
|
|
|
|
|
|
|
|
|
| BAR-PLUS |
|
|
|
|
|
|
|
|
|
| Bioverse |
|
|
|
|
|
|
|
|
|
| CBS DAS protein
viewer |
|
|
|
|
|
|
|
| COFACTOR |
|
|
|
|
|
|
|
|
|
| CombFunc |
|
|
|
|
|
|
|
|
| DBAli |
|
|
|
|
|
|
|
|
|
| dbCAN |
|
|
|
|
|
|
|
|
|
| DichroMatch |
|
|
|
|
|
|
|
|
| ESTExplorer |
|
|
|
|
|
|
|
|
| ET report
Maker |
|
|
|
|
|
|
|
|
| FFPred |
|
|
|
|
|
|
|
|
|
| GCView |
|
|
|
|
|
|
|
|
|
| Gene3D |
|
|
|
|
|
|
|
|
|
| GeneTrail |
|
|
|
|
|
|
|
|
|
| Goblet |
|
|
|
|
|
|
|
|
|
| GPCRpred |
|
|
|
|
|
|
|
|
|
| GPCRsclass |
|
|
|
|
|
|
|
|
| GRIFFIN |
|
|
|
|
|
|
|
|
|
| HotSpot
Wizard |
|
|
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| iELM |
|
|
|
|
|
|
|
|
|
| InterProScan |
|
|
|
|
|
|
|
|
| INTREPID |
|
|
|
|
|
|
|
|
|
| JEvTrace |
|
|
|
|
|
|
|
|
|
| LOCtarget |
|
|
|
|
|
|
|
|
|
| MarkUs |
|
|
|
|
|
|
|
|
|
| MEDock |
|
|
|
|
|
|
|
|
|
| MITOPRED |
|
|
|
|
|
|
|
|
|
| MoViES |
|
|
|
|
|
|
|
|
|
| MuD |
|
|
|
|
|
|
|
|
|
| NRSAS |
|
|
|
|
|
|
|
|
|
| PANDORA |
|
|
|
|
|
|
|
|
|
| PANTHER Tools |
|
|
|
|
|
|
|
|
| PCFamily |
|
|
|
|
|
|
|
|
|
| PEPVAC |
|
|
|
|
|
|
|
|
|
| PhenomicsDB |
|
|
|
|
|
|
|
|
| Phydbac2 |
|
|
|
|
|
|
|
|
|
| PocketAnnotate |
|
|
|
|
|
|
|
|
| PolyPhen |
|
|
|
|
|
|
|
|
|
| POLYVIEW-MM |
|
|
|
|
|
|
|
|
| PRED-GPCR |
|
|
|
|
|
|
|
|
| PrediSi |
|
|
|
|
|
|
|
|
|
| ProFunc |
|
|
|
|
|
|
|
|
|
| ProGMap |
|
|
|
|
|
|
|
|
|
| Proteome
Analyst |
|
|
|
|
|
|
|
|
| ProTeus |
|
|
|
|
|
|
|
|
|
| PubChem
BioAssay Service |
|
|
|
|
|
|
|
| SDPpred |
|
|
|
|
|
|
|
|
|
| SEPACS |
|
|
|
|
|
|
|
|
|
| Sequence
Harmony |
|
|
|
|
|
|
|
|
| SIFT |
|
|
|
|
|
|
|
|
|
| SNP@Domain |
|
|
|
|
|
|
|
|
| STING
Millenium |
|
|
|
|
|
|
|
|
| The European Bioinformatics
Institute (EBI) |
|
|
|
|
|
|
| TreeDet |
|
|
|
|
|
|
|
|
|
| WebGestalt |
|
|
|
|
|
|
|
|
| webPIPSA |
|
|
|
|
|
|
|
|
|
| WEGO |
|
|
|
|
|
|
|
|
|
| Biochemical
Features |
|
|
|
|
|
|
|
|
| AnalyCys |
|
|
|
|
|
|
|
|
|
| BioMe |
|
|
|
|
|
|
|
|
|
| CBS DAS protein
viewer |
|
|
|
|
|
|
|
| CUPSAT |
|
|
|
|
|
|
|
|
|
| DEPTH |
|
|
|
|
|
|
|
|
|
| DiANNA |
|
|
|
|
|
|
|
|
|
| DISULFIND |
|
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| GDAP |
|
|
|
|
|
|
|
|
|
| H++ |
|
|
|
|
|
|
|
|
|
| HotSpot
Wizard |
|
|
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| IC50-to-Ki |
|
|
|
|
|
|
|
|
|
| IEDB-AR |
|
|
|
|
|
|
|
|
|
| MASCOT (Matrix Science) |
|
|
|
|
|
|
|
| MODi |
|
|
|
|
|
|
|
|
|
| MolSurfer |
|
|
|
|
|
|
|
|
|
| MONSTER |
|
|
|
|
|
|
|
|
|
| MPI Toolkit |
|
|
|
|
|
|
|
|
| NRSAS |
|
|
|
|
|
|
|
|
|
| Onto-Tools |
|
|
|
|
|
|
|
|
| PBEQ-Solver |
|
|
|
|
|
|
|
|
| PCE |
|
|
|
|
|
|
|
|
|
| PDB2PQR Server |
|
|
|
|
|
|
|
|
| PDB_Hydro |
|
|
|
|
|
|
|
|
| PeptideMass |
|
|
|
|
|
|
|
|
| PHEMTO |
|
|
|
|
|
|
|
|
|
| PHEPS |
|
|
|
|
|
|
|
|
|
| PI2PE |
|
|
|
|
|
|
|
|
|
| PROFEAT |
|
|
|
|
|
|
|
|
|
| ProMoST |
|
|
|
|
|
|
|
|
|
| ProSight PTM |
|
|
|
|
|
|
|
|
| Protein Dipole
Server |
|
|
|
|
|
|
|
|
| ProtParam |
|
|
|
|
|
|
|
|
| PubChem
BioAssay Service |
|
|
|
|
|
|
|
| Qgrid |
|
|
|
|
|
|
|
|
|
| RosettaDesign |
|
|
|
|
|
|
|
|
| RPBS |
|
|
|
|
|
|
|
|
|
| SLITHER |
|
|
|
|
|
|
|
|
|
| STING
Millenium |
|
|
|
|
|
|
|
|
| The Amino Acid
Repository |
|
|
|
|
|
|
|
| The Mendel Site |
|
|
|
|
|
|
|
|
| The Sequence
Manipulation Suite 2 |
|
|
|
|
|
|
| WebProAnalyst |
|
|
|
|
|
|
|
|
| Databases |
|
|
|
|
|
|
|
|
|
| 3D-Footprint |
|
|
|
|
|
|
|
|
| 3did |
|
|
|
|
|
|
|
|
|
| ArachnoServer 2.0 |
|
|
|
|
|
|
|
|
| ASD |
|
|
|
|
|
|
|
|
|
| ASPicDB |
|
|
|
|
|
|
|
|
|
| AtPID |
|
|
|
|
|
|
|
|
|
| BioSystems |
|
|
|
|
|
|
|
|
| BISC |
|
|
|
|
|
|
|
|
|
| BRENDA |
|
|
|
|
|
|
|
|
|
| BriX |
|
|
|
|
|
|
|
|
|
| BSDB |
|
|
|
|
|
|
|
|
|
| CATH |
|
|
|
|
|
|
|
|
|
| CDD |
|
|
|
|
|
|
|
|
|
| CDDB |
|
|
|
|
|
|
|
|
|
| CellBase |
|
|
|
|
|
|
|
|
|
| ComSin |
|
|
|
|
|
|
|
|
|
| ConsensusPathDB |
|
|
|
|
|
|
|
|
| CORUM |
|
|
|
|
|
|
|
|
|
| CPLA 1.0 |
|
|
|
|
|
|
|
|
|
| dbDEPC |
|
|
|
|
|
|
|
|
|
| DIMA 3.0 |
|
|
|
|
|
|
|
|
|
| DOMINE |
|
|
|
|
|
|
|
|
|
| DroID |
|
|
|
|
|
|
|
|
|
| DRYGin |
|
|
|
|
|
|
|
|
|
| DynamicProteomics
DB |
|
|
|
|
|
|
|
| Effective |
|
|
|
|
|
|
|
|
|
| eggNOG |
|
|
|
|
|
|
|
|
|
| ELM |
|
|
|
|
|
|
|
|
|
| EMDataBank.org |
|
|
|
|
|
|
|
|
| ENCODE DCC |
|
|
|
|
|
|
|
|
| fPOP |
|
|
|
|
|
|
|
|
|
| FunSimMat |
|
|
|
|
|
|
|
|
| Gene3D |
|
|
|
|
|
|
|
|
|
| GPCRDB |
|
|
|
|
|
|
|
|
|
| GWIDD |
|
|
|
|
|
|
|
|
|
| HHMD |
|
|
|
|
|
|
|
|
|
| HitPredict |
|
|
|
|
|
|
|
|
|
| IBIS |
|
|
|
|
|
|
|
|
|
| IEDB-3D |
|
|
|
|
|
|
|
|
|
| IMGT/3Dstructure |
|
|
|
|
|
|
|
|
| Immune Epitome
Database |
|
|
|
|
|
|
|
| InParanoid |
|
|
|
|
|
|
|
|
| IntAct |
|
|
|
|
|
|
|
|
|
| IsoBase |
|
|
|
|
|
|
|
|
|
| IUPHAR-DB |
|
|
|
|
|
|
|
|
| KaPPA-View4 |
|
|
|
|
|
|
|
|
| KUPS |
|
|
|
|
|
|
|
|
|
| Laminin databes |
|
|
|
|
|
|
|
|
| LocDB |
|
|
|
|
|
|
|
|
|
| MatrixDB |
|
|
|
|
|
|
|
|
|
| MeMotif |
|
|
|
|
|
|
|
|
|
| MEROPS |
|
|
|
|
|
|
|
|
|
| MetaBioME |
|
|
|
|
|
|
|
|
| MetaCyc |
|
|
|
|
|
|
|
|
|
| MiCroKit |
|
|
|
|
|
|
|
|
|
| MINT |
|
|
|
|
|
|
|
|
|
| MIPS |
|
|
|
|
|
|
|
|
|
| MiST |
|
|
|
|
|
|
|
|
|
| MitoGenesisDB |
|
|
|
|
|
|
|
|
| ModBase |
|
|
|
|
|
|
|
|
|
| NCBI Resources |
|
|
|
|
|
|
|
|
| Negatome |
|
|
|
|
|
|
|
|
|
| OMA |
|
|
|
|
|
|
|
|
|
| OMPdb |
|
|
|
|
|
|
|
|
|
| OrthoDB |
|
|
|
|
|
|
|
|
|
| P2CS |
|
|
|
|
|
|
|
|
|
| PANTHER |
|
|
|
|
|
|
|
|
|
| PCDB |
|
|
|
|
|
|
|
|
|
| PCDDB |
|
|
|
|
|
|
|
|
|
| PCRPi-DB |
|
|
|
|
|
|
|
|
|
| PDB
Related Databases |
|
|
|
|
|
|
|
| PDBe |
|
|
|
|
|
|
|
|
|
| PDBe (formerly MSD) |
|
|
|
|
|
|
|
|
| PDBselect |
|
|
|
|
|
|
|
|
|
| PepX |
|
|
|
|
|
|
|
|
|
| PeroxisomeDB |
|
|
|
|
|
|
|
|
| Pfam |
|
|
|
|
|
|
|
|
|
| PHOSIDA 2011 |
|
|
|
|
|
|
|
|
| Phospho.ELM |
|
|
|
|
|
|
|
|
| Phospho3D 2.0 |
|
|
|
|
|
|
|
|
| PolyQ |
|
|
|
|
|
|
|
|
|
| PREX |
|
|
|
|
|
|
|
|
|
| PRIDB |
|
|
|
|
|
|
|
|
|
| PRIDE |
|
|
|
|
|
|
|
|
|
| PROSITE |
|
|
|
|
|
|
|
|
|
| ProtCID |
|
|
|
|
|
|
|
|
|
| Protein Geometry
Database |
|
|
|
|
|
|
|
| Protein Naming Utility |
|
|
|
|
|
|
|
| PSC |
|
|
|
|
|
|
|
|
|
| PSORTdb |
|
|
|
|
|
|
|
|
|
| PTGL |
|
|
|
|
|
|
|
|
|
| RCSB Protein Data Bank |
|
|
|
|
|
|
|
| REBASE |
|
|
|
|
|
|
|
|
|
| RegPhos |
|
|
|
|
|
|
|
|
|
| REPAIRtoire |
|
|
|
|
|
|
|
|
| SAHG |
|
|
|
|
|
|
|
|
|
| SALAD |
|
|
|
|
|
|
|
|
|
| Selectome |
|
|
|
|
|
|
|
|
|
| SIMAP |
|
|
|
|
|
|
|
|
|
| STITCH |
|
|
|
|
|
|
|
|
|
| STRING |
|
|
|
|
|
|
|
|
|
| SuperCYP |
|
|
|
|
|
|
|
|
|
| SUPERFAMILY |
|
|
|
|
|
|
|
|
| TcoF-DB |
|
|
|
|
|
|
|
|
|
| The Autophagy
Database |
|
|
|
|
|
|
|
| The BioGRID Interaction
Database |
|
|
|
|
|
|
|
| The European Bioinformatics
Institute (EBI) |
|
|
|
|
|
|
| The Protein Ontology |
|
|
|
|
|
|
|
|
| ThYme |
|
|
|
|
|
|
|
|
|
| TMPad |
|
|
|
|
|
|
|
|
|
| TOPSAN |
|
|
|
|
|
|
|
|
|
| TransmiR |
|
|
|
|
|
|
|
|
|
| TRIP |
|
|
|
|
|
|
|
|
|
| UM-BBD |
|
|
|
|
|
|
|
|
|
| UniPROBE |
|
|
|
|
|
|
|
|
|
| Universal Protein Resource
(UniProt) |
|
|
|
|
|
|
| VKCDB |
|
|
|
|
|
|
|
|
|
| Do-it-all
Tools for Protein |
|
|
|
|
|
|
|
| (@)TOME-2 |
|
|
|
|
|
|
|
|
| BCM Search
Launcher |
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| ExPaSy Molecular Biology
Server |
|
|
|
|
|
|
|
| MassNet |
|
|
|
|
|
|
|
|
|
| MPI Toolkit |
|
|
|
|
|
|
|
|
| NRSAS |
|
|
|
|
|
|
|
|
|
| Phylogeny.fr |
|
|
|
|
|
|
|
|
| PROTEUS2 |
|
|
|
|
|
|
|
|
|
| SeWeR |
|
|
|
|
|
|
|
|
|
| TarO |
|
|
|
|
|
|
|
|
|
| UGENE |
|
|
|
|
|
|
|
|
|
| Domains
and Motifs |
|
|
|
|
|
|
|
|
| 3dLOGO |
|
|
|
|
|
|
|
|
|
| 3Matrix |
|
|
|
|
|
|
|
|
|
| 3Motif |
|
|
|
|
|
|
|
|
|
| AD-ENM |
|
|
|
|
|
|
|
|
|
| AlgPred |
|
|
|
|
|
|
|
|
|
| ASEB |
|
|
|
|
|
|
|
|
|
| AUGUSTUS |
|
|
|
|
|
|
|
|
| Berkeley
Phylogenomics Group |
|
|
|
|
|
|
|
| BindN |
|
|
|
|
|
|
|
|
|
| Blocks WWW Server |
|
|
|
|
|
|
|
|
| Cascade PSI-Blast |
|
|
|
|
|
|
|
|
| CBS DAS protein
viewer |
|
|
|
|
|
|
|
| CD-Search |
|
|
|
|
|
|
|
|
|
| CHOP |
|
|
|
|
|
|
|
|
|
| COGs |
|
|
|
|
|
|
|
|
|
| COPS |
|
|
|
|
|
|
|
|
|
| CRP |
|
|
|
|
|
|
|
|
|
| d-Omix |
|
|
|
|
|
|
|
|
|
| DBAli |
|
|
|
|
|
|
|
|
|
| DHcL |
|
|
|
|
|
|
|
|
|
| DIAL |
|
|
|
|
|
|
|
|
|
| DILIMOT |
|
|
|
|
|
|
|
|
|
| DOUTfinder |
|
|
|
|
|
|
|
|
| DR.Bind |
|
|
|
|
|
|
|
|
|
| EBI Tools |
|
|
|
|
|
|
|
|
|
| ELM |
|
|
|
|
|
|
|
|
|
| ESTExplorer |
|
|
|
|
|
|
|
|
| fastSCOP |
|
|
|
|
|
|
|
|
|
| FF -
Fragment Finder |
|
|
|
|
|
|
|
|
| FFAS |
|
|
|
|
|
|
|
|
|
| firestar |
|
|
|
|
|
|
|
|
|
| FISH |
|
|
|
|
|
|
|
|
|
| FoldMiner and LOCK 2 |
|
|
|
|
|
|
|
|
| FTMAP |
|
|
|
|
|
|
|
|
|
| FunShift |
|
|
|
|
|
|
|
|
|
| g:Profiler |
|
|
|
|
|
|
|
|
|
| Gene3D |
|
|
|
|
|
|
|
|
|
| GeneTrail |
|
|
|
|
|
|
|
|
|
| Gibbs
Motif Sampler |
|
|
|
|
|
|
|
|
| GlobProt |
|
|
|
|
|
|
|
|
|
| GPS |
|
|
|
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| IEDB-AR |
|
|
|
|
|
|
|
|
|
| iELM |
|
|
|
|
|
|
|
|
|
| iMOT |
|
|
|
|
|
|
|
|
|
| InterPro |
|
|
|
|
|
|
|
|
|
| InterProScan |
|
|
|
|
|
|
|
|
| IntFOLD |
|
|
|
|
|
|
|
|
|
| iSPOT |
|
|
|
|
|
|
|
|
|
| KinasePhos |
|
|
|
|
|
|
|
|
| KinasePhos 2.0 |
|
|
|
|
|
|
|
|
| Localizome |
|
|
|
|
|
|
|
|
| LogoBar |
|
|
|
|
|
|
|
|
|
| MAGIIC-PRO |
|
|
|
|
|
|
|
|
| Melinall |
|
|
|
|
|
|
|
|
|
| MEME Suite |
|
|
|
|
|
|
|
|
| Meta-MEME |
|
|
|
|
|
|
|
|
| MetaMHC |
|
|
|
|
|
|
|
|
|
| MODPROPEP |
|
|
|
|
|
|
|
|
| Motif3D |
|
|
|
|
|
|
|
|
|
| MPI Toolkit |
|
|
|
|
|
|
|
|
| MyHits |
|
|
|
|
|
|
|
|
|
| NetOGlyc
Prediction Server |
|
|
|
|
|
|
|
| NRPS-PKS |
|
|
|
|
|
|
|
|
|
| One-Block
CYRCA |
|
|
|
|
|
|
|
|
| OpenHUSAR |
|
|
|
|
|
|
|
|
| PANTHER Tools |
|
|
|
|
|
|
|
|
| Paratome |
|
|
|
|
|
|
|
|
|
| PARSESNP |
|
|
|
|
|
|
|
|
|
| PatMatch |
|
|
|
|
|
|
|
|
|
| Pcons.net |
|
|
|
|
|
|
|
|
|
| pdbFun |
|
|
|
|
|
|
|
|
|
| Phospho.ELM |
|
|
|
|
|
|
|
|
| PhosphoSite |
|
|
|
|
|
|
|
|
| PhyloDome |
|
|
|
|
|
|
|
|
| PINTS |
|
|
|
|
|
|
|
|
|
| PipeAlign |
|
|
|
|
|
|
|
|
|
| PRED-GPCR |
|
|
|
|
|
|
|
|
| PredictProtein |
|
|
|
|
|
|
|
|
| Predikin |
|
|
|
|
|
|
|
|
|
| PRODOC |
|
|
|
|
|
|
|
|
|
| ProFunc |
|
|
|
|
|
|
|
|
|
| ProKware |
|
|
|
|
|
|
|
|
|
| PROSITE |
|
|
|
|
|
|
|
|
|
| ProteDNA |
|
|
|
|
|
|
|
|
|
| ProteinCCD |
|
|
|
|
|
|
|
|
| ProTeus |
|
|
|
|
|
|
|
|
|
| QSCOP -
BLAST |
|
|
|
|
|
|
|
|
| QuasiMotiFinder |
|
|
|
|
|
|
|
|
| RNABindR |
|
|
|
|
|
|
|
|
|
| SA-Mot |
|
|
|
|
|
|
|
|
|
| SCANMOT |
|
|
|
|
|
|
|
|
|
| ScanProsite |
|
|
|
|
|
|
|
|
| Scansite |
|
|
|
|
|
|
|
|
|
| Scooby-domain |
|
|
|
|
|
|
|
|
| SCOP |
|
|
|
|
|
|
|
|
|
| SCRATCH |
|
|
|
|
|
|
|
|
|
| SEARCHGTr |
|
|
|
|
|
|
|
|
| SEARCHPKS |
|
|
|
|
|
|
|
|
| seeMotif |
|
|
|
|
|
|
|
|
|
| Servers at
University College London |
|
|
|
|
|
|
| SH3-Hunter |
|
|
|
|
|
|
|
|
| SIRW |
|
|
|
|
|
|
|
|
|
| SledgeHMMER |
|
|
|
|
|
|
|
|
| SLiMDisc |
|
|
|
|
|
|
|
|
|
| SLiMFinder |
|
|
|
|
|
|
|
|
| SLiMSearch |
|
|
|
|
|
|
|
|
| SMART |
|
|
|
|
|
|
|
|
|
| SNP@Domain |
|
|
|
|
|
|
|
|
| SPRITE |
|
|
|
|
|
|
|
|
|
| SUMOsp |
|
|
|
|
|
|
|
|
|
| SVM-PROT |
|
|
|
|
|
|
|
|
|
| TACT |
|
|
|
|
|
|
|
|
|
| The European Bioinformatics
Institute (EBI) |
|
|
|
|
|
|
| The Mendel Site |
|
|
|
|
|
|
|
|
| TreeDet |
|
|
|
|
|
|
|
|
|
| TreeDomViewer |
|
|
|
|
|
|
|
|
| WDAC |
|
|
|
|
|
|
|
|
|
| WebFEATURE |
|
|
|
|
|
|
|
|
| WebGestalt |
|
|
|
|
|
|
|
|
| WebMOTIFS |
|
|
|
|
|
|
|
|
| webPRC |
|
|
|
|
|
|
|
|
|
| Identification,
Presentation and Format |
|
|
|
|
|
|
| BoxShade |
|
|
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| GeneDoc |
|
|
|
|
|
|
|
|
|
| JOY |
|
|
|
|
|
|
|
|
|
| LogoBar |
|
|
|
|
|
|
|
|
|
| PICR |
|
|
|
|
|
|
|
|
|
| POV-Ray |
|
|
|
|
|
|
|
|
|
| RbDe |
|
|
|
|
|
|
|
|
|
| ReadSeq |
|
|
|
|
|
|
|
|
|
| T-COFFEE |
|
|
|
|
|
|
|
|
|
| The Sequence
Manipulation Suite 2 |
|
|
|
|
|
|
| VisCoSe |
|
|
|
|
|
|
|
|
|
| WAViS |
|
|
|
|
|
|
|
|
|
| WebLogo |
|
|
|
|
|
|
|
|
|
| Localization
and Targeting |
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| BOMP |
|
|
|
|
|
|
|
|
|
| CBS DAS protein
viewer |
|
|
|
|
|
|
|
| ESLpred |
|
|
|
|
|
|
|
|
|
| GeneTrail |
|
|
|
|
|
|
|
|
|
| GPCRsclass |
|
|
|
|
|
|
|
|
| Loc3D |
|
|
|
|
|
|
|
|
|
| Localizome |
|
|
|
|
|
|
|
|
| LOCATE |
|
|
|
|
|
|
|
|
|
| MemPype |
|
|
|
|
|
|
|
|
|
| MetaMHC |
|
|
|
|
|
|
|
|
|
| MIGenAS Toolkit |
|
|
|
|
|
|
|
|
| OpenHUSAR |
|
|
|
|
|
|
|
|
| PA-SUB |
|
|
|
|
|
|
|
|
|
| Phobius |
|
|
|
|
|
|
|
|
|
| PONGO |
|
|
|
|
|
|
|
|
|
| PRED-TMBB |
|
|
|
|
|
|
|
|
| PrediSi |
|
|
|
|
|
|
|
|
|
| PROFtmb |
|
|
|
|
|
|
|
|
|
| PSIPRED |
|
|
|
|
|
|
|
|
|
| PSORT.org |
|
|
|
|
|
|
|
|
|
| PSORTdb |
|
|
|
|
|
|
|
|
|
| pTARGET |
|
|
|
|
|
|
|
|
|
| RHYTHM |
|
|
|
|
|
|
|
|
|
| SAPS - Statistical
Analysis of Protein Sequences |
|
|
|
|
|
| Servers at
University College London |
|
|
|
|
|
|
| SignaIP |
|
|
|
|
|
|
|
|
|
| SLiMDisc |
|
|
|
|
|
|
|
|
|
| SVMtm |
|
|
|
|
|
|
|
|
|
| The Mendel Site |
|
|
|
|
|
|
|
|
| TMBETA-NET |
|
|
|
|
|
|
|
|
| TMH
Benchmark |
|
|
|
|
|
|
|
|
| Tmpred |
|
|
|
|
|
|
|
|
|
| TRAMPLE |
|
|
|
|
|
|
|
|
|
| transFold |
|
|
|
|
|
|
|
|
|
| WoLF PSORT |
|
|
|
|
|
|
|
|
| Yloc |
|
|
|
|
|
|
|
|
|
| Molecular
Dynamic and Docking |
|
|
|
|
|
|
|
| 3DLigandSite |
|
|
|
|
|
|
|
|
| 3DTF |
|
|
|
|
|
|
|
|
|
| (@)TOME-2 |
|
|
|
|
|
|
|
|
| AD-ENM |
|
|
|
|
|
|
|
|
|
| Andrej Sali
Lab |
|
|
|
|
|
|
|
|
| BioInfo3D |
|
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| ClusPro |
|
|
|
|
|
|
|
|
|
| DEPTH |
|
|
|
|
|
|
|
|
|
| EINemo |
|
|
|
|
|
|
|
|
|
| EpiToolKit |
|
|
|
|
|
|
|
|
|
| FastContact |
|
|
|
|
|
|
|
|
| FiberDock |
|
|
|
|
|
|
|
|
|
| FireDock |
|
|
|
|
|
|
|
|
|
| FOLD-RATE |
|
|
|
|
|
|
|
|
| FoldX |
|
|
|
|
|
|
|
|
|
| GPU.proton.DOCK |
|
|
|
|
|
|
|
|
| GRAMM-X |
|
|
|
|
|
|
|
|
|
| HexServer |
|
|
|
|
|
|
|
|
|
| I-Mutant2.0 |
|
|
|
|
|
|
|
|
| idTarget |
|
|
|
|
|
|
|
|
|
| KinDOCK |
|
|
|
|
|
|
|
|
|
| MCPep |
|
|
|
|
|
|
|
|
|
| MEDock |
|
|
|
|
|
|
|
|
|
| MinActionPath |
|
|
|
|
|
|
|
|
| MoViES |
|
|
|
|
|
|
|
|
|
| NetMHC-3.0 |
|
|
|
|
|
|
|
|
| NOMAD-Ref |
|
|
|
|
|
|
|
|
| NRSAS |
|
|
|
|
|
|
|
|
|
| oGNM |
|
|
|
|
|
|
|
|
|
| OptiTope |
|
|
|
|
|
|
|
|
|
| ParticleStats |
|
|
|
|
|
|
|
|
| PatchDock |
|
|
|
|
|
|
|
|
| PharmaGist |
|
|
|
|
|
|
|
|
| POLYVIEW-MM |
|
|
|
|
|
|
|
|
| PubChem
BioAssay Service |
|
|
|
|
|
|
|
| Quantum.Ligand.Dock |
|
|
|
|
|
|
|
| Rosetta
FlexPepDock |
|
|
|
|
|
|
|
|
| RosettaDock
Server |
|
|
|
|
|
|
|
|
| SePreSA |
|
|
|
|
|
|
|
|
|
| SiMMap |
|
|
|
|
|
|
|
|
|
| SITEHOUND-web |
|
|
|
|
|
|
|
|
| SLITHER |
|
|
|
|
|
|
|
|
|
| SplitPocket |
|
|
|
|
|
|
|
|
| SwissDock |
|
|
|
|
|
|
|
|
|
| SymmDock |
|
|
|
|
|
|
|
|
| TarFisDock |
|
|
|
|
|
|
|
|
| webPIPSA |
|
|
|
|
|
|
|
|
|
| ZINCPharmer |
|
|
|
|
|
|
|
|
| Networks
& Interactions, Pathways and Enzymes |
|
|
|
|
|
| 3D-partner |
|
|
|
|
|
|
|
|
| ANCHOR |
|
|
|
|
|
|
|
|
|
| APID |
|
|
|
|
|
|
|
|
|
| ArrayXPath |
|
|
|
|
|
|
|
|
| Babelomics |
|
|
|
|
|
|
|
|
| BIND -
The Biomolecular Interaction Network Database |
|
|
|
|
|
| BIOBASE
Gene Regulation databases |
|
|
|
|
|
|
| BioCarta |
|
|
|
|
|
|
|
|
|
| BioCyc Knowledge Library |
|
|
|
|
|
|
|
| BioInfo3D |
|
|
|
|
|
|
|
|
|
| BiologicalNetworks |
|
|
|
|
|
|
|
|
| BioMart |
|
|
|
|
|
|
|
|
|
| BioMet Toolbox |
|
|
|
|
|
|
|
|
| BIPS |
|
|
|
|
|
|
|
|
|
| BRENDA - The
Comprehensive Enzyme Information System |
|
|
|
|
|
| CARGO |
|
|
|
|
|
|
|
|
|
| CPA - Comparative Pathway Analyzer |
|
|
|
|
|
|
| Cytoscape |
|
|
|
|
|
|
|
|
|
| d-Omix |
|
|
|
|
|
|
|
|
|
| DASMIweb |
|
|
|
|
|
|
|
|
| DAVID
Bioinformatics Resources |
|
|
|
|
|
|
|
| DEEP |
|
|
|
|
|
|
|
|
|
| DePIE |
|
|
|
|
|
|
|
|
|
| DILIMOT |
|
|
|
|
|
|
|
|
|
| DIP |
|
|
|
|
|
|
|
|
|
| DRAR-CPI |
|
|
|
|
|
|
|
|
|
| DroPNet |
|
|
|
|
|
|
|
|
|
| DrugScorePPI |
|
|
|
|
|
|
|
|
| E1DS |
|
|
|
|
|
|
|
|
|
| ENZYME - Enzyme
nomenclature database |
|
|
|
|
|
|
| ESTExplorer |
|
|
|
|
|
|
|
|
| FatiGOplus |
|
|
|
|
|
|
|
|
| firestar |
|
|
|
|
|
|
|
|
|
| FMM |
|
|
|
|
|
|
|
|
|
| g:Profiler |
|
|
|
|
|
|
|
|
|
| GeneExpress2.1 |
|
|
|
|
|
|
|
|
| GenePath2 |
|
|
|
|
|
|
|
|
| GeneTrail |
|
|
|
|
|
|
|
|
|
| GENIES |
|
|
|
|
|
|
|
|
|
| GenomeNet |
|
|
|
|
|
|
|
|
| GLAMM |
|
|
|
|
|
|
|
|
|
| GPU.proton.DOCK |
|
|
|
|
|
|
|
|
| HotPoint |
|
|
|
|
|
|
|
|
|
| Hubba |
|
|
|
|
|
|
|
|
|
| Human Protein Reference Database |
|
|
|
|
|
|
| I2I-SiteEngine |
|
|
|
|
|
|
|
|
| iCR |
|
|
|
|
|
|
|
|
|
| iHOP |
|
|
|
|
|
|
|
|
|
| IMEx |
|
|
|
|
|
|
|
|
|
| iMOT |
|
|
|
|
|
|
|
|
|
| IntEnz: Integrated
relational Enzyme database |
|
|
|
|
|
|
| Interolog/Regulog
Database |
|
|
|
|
|
|
|
| InteroPORC |
|
|
|
|
|
|
|
|
| IntScore |
|
|
|
|
|
|
|
|
|
| iPath |
|
|
|
|
|
|
|
|
|
| iRefIndex |
|
|
|
|
|
|
|
|
|
| iSPOT |
|
|
|
|
|
|
|
|
|
| KAAS |
|
|
|
|
|
|
|
|
|
| KEGG: Kyoto
Encyclopedia of Genes and Genomes |
|
|
|
|
|
| KOBAS |
|
|
|
|
|
|
|
|
|
| LitInspector |
|
|
|
|
|
|
|
|
| MAGNET |
|
|
|
|
|
|
|
|
|
| MetaboAnalyst 2.0 |
|
|
|
|
|
|
|
|
| MetaPath Online |
|
|
|
|
|
|
|
|
| metaSHARK |
|
|
|
|
|
|
|
|
| MetExplore |
|
|
|
|
|
|
|
|
| MINT |
|
|
|
|
|
|
|
|
|
| MIPS |
|
|
|
|
|
|
|
|
|
| MolSurfer |
|
|
|
|
|
|
|
|
|
| MoNetFamily |
|
|
|
|
|
|
|
|
| MSEA |
|
|
|
|
|
|
|
|
|
| NetAligner |
|
|
|
|
|
|
|
|
|
| NRPSpredictor2 |
|
|
|
|
|
|
|
|
| Onto - Tools |
|
|
|
|
|
|
|
|
| PAComplex |
|
|
|
|
|
|
|
|
| PANTHER Tools |
|
|
|
|
|
|
|
|
| PathBLAST |
|
|
|
|
|
|
|
|
|
| PathExpress |
|
|
|
|
|
|
|
|
| PathGuide |
|
|
|
|
|
|
|
|
|
| PathPred |
|
|
|
|
|
|
|
|
|
| Pathway Commons |
|
|
|
|
|
|
|
|
| Pathway
Explorer |
|
|
|
|
|
|
|
|
| Pathway
extraction |
|
|
|
|
|
|
|
|
| Pathway Hunter Tool |
|
|
|
|
|
|
|
|
| Pathway Miner |
|
|
|
|
|
|
|
|
| PCFamily |
|
|
|
|
|
|
|
|
|
| PEPVAC |
|
|
|
|
|
|
|
|
|
| PFP |
|
|
|
|
|
|
|
|
|
| PharmMapper |
|
|
|
|
|
|
|
|
| PI2PE |
|
|
|
|
|
|
|
|
|
| PIC |
|
|
|
|
|
|
|
|
|
| PIE |
|
|
|
|
|
|
|
|
|
| PINT |
|
|
|
|
|
|
|
|
|
| POPSCOMP |
|
|
|
|
|
|
|
|
| PPISearch |
|
|
|
|
|
|
|
|
|
| Predikin |
|
|
|
|
|
|
|
|
|
| PredUs |
|
|
|
|
|
|
|
|
|
| Prince |
|
|
|
|
|
|
|
|
|
| PRISM |
|
|
|
|
|
|
|
|
|
| ProMateus |
|
|
|
|
|
|
|
|
| Protinfo
PPC |
|
|
|
|
|
|
|
|
| PRUNE and
PROBE |
|
|
|
|
|
|
|
|
| PubChem
BioAssay Service |
|
|
|
|
|
|
|
| R
spider |
|
|
|
|
|
|
|
|
|
| Reactome |
|
|
|
|
|
|
|
|
|
| ResponceNet |
|
|
|
|
|
|
|
|
| Robetta |
|
|
|
|
|
|
|
|
|
| SBSPKS |
|
|
|
|
|
|
|
|
|
| SBT
Interface - dbMHC |
|
|
|
|
|
|
|
|
| SePreSA |
|
|
|
|
|
|
|
|
|
| SH3-Hunter |
|
|
|
|
|
|
|
|
| SIMCOMP/SUBCOMP |
|
|
|
|
|
|
|
|
| SiteEngine |
|
|
|
|
|
|
|
|
|
| SITEHOUND-web |
|
|
|
|
|
|
|
|
| SLiMDisc |
|
|
|
|
|
|
|
|
|
| SNOW |
|
|
|
|
|
|
|
|
|
| SPIKE |
|
|
|
|
|
|
|
|
|
| SteinerNet |
|
|
|
|
|
|
|
|
|
| STRING |
|
|
|
|
|
|
|
|
|
| Struct2Net |
|
|
|
|
|
|
|
|
| StSNP |
|
|
|
|
|
|
|
|
|
| SurvNet |
|
|
|
|
|
|
|
|
|
| SVMHC |
|
|
|
|
|
|
|
|
|
| Taverna |
|
|
|
|
|
|
|
|
|
| The GRID - General
Repository for Interaction Datasets |
|
|
|
|
|
| The Osprey Network
Visualization System |
|
|
|
|
|
|
| Torque |
|
|
|
|
|
|
|
|
|
| Ulysses |
|
|
|
|
|
|
|
|
|
| UM-PPS |
|
|
|
|
|
|
|
|
|
| VirHostnet |
|
|
|
|
|
|
|
|
| VisANT |
|
|
|
|
|
|
|
|
|
| VISIBIOweb |
|
|
|
|
|
|
|
|
| WebGestalt |
|
|
|
|
|
|
|
|
| WebInterViewer |
|
|
|
|
|
|
|
|
| Phylogeny
Reconstruction |
|
|
|
|
|
|
|
|
|
| Berkeley
Phylogenomics Group |
|
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
|
|
| BLASTO |
|
|
|
|
|
|
|
|
|
|
|
| CIPRes |
|
|
|
|
|
|
|
|
|
|
|
| ConSeq |
|
|
|
|
|
|
|
|
|
|
|
| cpnDB |
|
|
|
|
|
|
|
|
|
|
|
| CVTree |
|
|
|
|
|
|
|
|
|
|
|
| d-Omix |
|
|
|
|
|
|
|
|
|
|
|
| DichroMatch |
|
|
|
|
|
|
|
|
|
|
| EvolView |
|
|
|
|
|
|
|
|
|
|
|
| FastML |
|
|
|
|
|
|
|
|
|
|
|
| FGF |
|
|
|
|
|
|
|
|
|
|
|
| iTOL |
|
|
|
|
|
|
|
|
|
|
|
| JEvTrace |
|
|
|
|
|
|
|
|
|
|
| Joes Site - Phylogeny Programs |
|
|
|
|
|
|
|
| MaxAlign |
|
|
|
|
|
|
|
|
|
| MEGA |
|
|
|
|
|
|
|
|
|
| Mesquite |
|
|
|
|
|
|
|
|
|
| MIGenAS Toolkit |
|
|
|
|
|
|
|
|
| MPI Toolkit |
|
|
|
|
|
|
|
|
| MultiPhyl |
|
|
|
|
|
|
|
|
|
| NCBI Taxonomy
Database |
|
|
|
|
|
|
|
| NEWT |
|
|
|
|
|
|
|
|
|
| Njplot |
|
|
|
|
|
|
|
|
|
| Orthologue
Search Service |
|
|
|
|
|
|
|
| PAL2NAL |
|
|
|
|
|
|
|
|
|
| PHOG |
|
|
|
|
|
|
|
|
|
| Phydbac2 |
|
|
|
|
|
|
|
|
|
| PhyleasProg |
|
|
|
|
|
|
|
|
| Phylemon |
|
|
|
|
|
|
|
|
|
| PHYLIP |
|
|
|
|
|
|
|
|
|
| PhyloDome |
|
|
|
|
|
|
|
|
| Phylogeny.fr |
|
|
|
|
|
|
|
|
| PhyloPars |
|
|
|
|
|
|
|
|
|
| PLecDom |
|
|
|
|
|
|
|
|
|
| POWER |
|
|
|
|
|
|
|
|
|
| PPISearch |
|
|
|
|
|
|
|
|
|
| primers4clades |
|
|
|
|
|
|
|
|
| ProtTest |
|
|
|
|
|
|
|
|
|
| Puzzleboot |
|
|
|
|
|
|
|
|
| Ribosomal Database Project |
|
|
|
|
|
|
|
| SPEED-SERVER |
|
|
|
|
|
|
|
|
| STING
Millenium |
|
|
|
|
|
|
|
|
| SWAKK |
|
|
|
|
|
|
|
|
|
| T-COFFEE |
|
|
|
|
|
|
|
|
|
| T-REX |
|
|
|
|
|
|
|
|
|
| Torque |
|
|
|
|
|
|
|
|
|
| Tree
Editors |
|
|
|
|
|
|
|
|
| Tree of Life |
|
|
|
|
|
|
|
|
|
| TREE-PUZZLE |
|
|
|
|
|
|
|
|
| TreeDomViewer |
|
|
|
|
|
|
|
|
| TreeJuxtaposer |
|
|
|
|
|
|
|
|
| TreeView |
|
|
|
|
|
|
|
|
|
| UCMP
phylogeny Wing |
|
|
|
|
|
|
|
| Understanding
Evolution |
|
|
|
|
|
|
|
| Weighbor |
|
|
|
|
|
|
|
|
|
| Protein
Expression |
|
|
|
|
|
|
|
|
| AutoClass@IJM |
|
|
|
|
|
|
|
|
| Cyber-T Webserver |
|
|
|
|
|
|
|
|
| ExPASy 2-D
PAGE databases and services |
|
|
|
|
|
|
| GELBANK |
|
|
|
|
|
|
|
|
|
| GelScape and GelBank |
|
|
|
|
|
|
|
|
| GeneExpress2.1 |
|
|
|
|
|
|
|
|
| JVirGel |
|
|
|
|
|
|
|
|
|
| NCI Flicker |
|
|
|
|
|
|
|
|
|
| ProMoST |
|
|
|
|
|
|
|
|
|
| Protein CCD |
|
|
|
|
|
|
|
|
| SWISS-2DPAGE |
|
|
|
|
|
|
|
|
| Proteomics |
|
|
|
|
|
|
|
|
| bioNMF |
|
|
|
|
|
|
|
|
|
| DeNovoID |
|
|
|
|
|
|
|
|
|
| ExPASy Proteomics tools |
|
|
|
|
|
|
|
| GELBANK |
|
|
|
|
|
|
|
|
|
| Human Protein Reference Database |
|
|
|
|
|
|
| HUPO Proteomics
Standards Initiative |
|
|
|
|
|
|
| iSARST |
|
|
|
|
|
|
|
|
|
| ISOTOPICA |
|
|
|
|
|
|
|
|
|
| ISPIDER Central |
|
|
|
|
|
|
|
|
| JVirGel |
|
|
|
|
|
|
|
|
|
| KEGG: Kyoto
Encyclopedia of Genes and Genomes |
|
|
|
|
|
| MASCOT (Matrix Science) |
|
|
|
|
|
|
|
| MassNet |
|
|
|
|
|
|
|
|
|
| MassTRIX |
|
|
|
|
|
|
|
|
|
| massXpert |
|
|
|
|
|
|
|
|
|
| MaXIC-Q |
|
|
|
|
|
|
|
|
|
| MetaboAnalyst 2.0 |
|
|
|
|
|
|
|
|
| Modi |
|
|
|
|
|
|
|
|
|
| Multi-Q |
|
|
|
|
|
|
|
|
|
| NeuroPred |
|
|
|
|
|
|
|
|
| PaLS |
|
|
|
|
|
|
|
|
|
| PANDORA |
|
|
|
|
|
|
|
|
|
| PEDRo |
|
|
|
|
|
|
|
|
|
| ProGMap |
|
|
|
|
|
|
|
|
|
| ProSight PTM |
|
|
|
|
|
|
|
|
| ProteinProspector |
|
|
|
|
|
|
|
|
| Proteios |
|
|
|
|
|
|
|
|
|
| Proteome
Analyst |
|
|
|
|
|
|
|
|
| PROWL |
|
|
|
|
|
|
|
|
|
| sgTarget |
|
|
|
|
|
|
|
|
|
| SMAP-WS |
|
|
|
|
|
|
|
|
|
| GPM |
|
|
|
|
|
|
|
|
|
| Sequence
Comparison |
|
|
|
|
|
|
|
| @TOME-2 |
|
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| BioShell Threader |
|
|
|
|
|
|
|
|
| Bioverse |
|
|
|
|
|
|
|
|
|
| COMA |
|
|
|
|
|
|
|
|
|
| d-Omix |
|
|
|
|
|
|
|
|
|
| HMMER Web Server |
|
|
|
|
|
|
|
|
| HotSpot
Wizard |
|
|
|
|
|
|
|
|
| InteroPorc |
|
|
|
|
|
|
|
|
| MaxAlign |
|
|
|
|
|
|
|
|
|
| Multi-Harmony |
|
|
|
|
|
|
|
|
| PLecDom |
|
|
|
|
|
|
|
|
|
| PPISearch |
|
|
|
|
|
|
|
|
|
| ProGMap |
|
|
|
|
|
|
|
|
|
| SCANPS |
|
|
|
|
|
|
|
|
|
| STING
Millenium |
|
|
|
|
|
|
|
|
| TOPCONS |
|
|
|
|
|
|
|
|
|
| WDAC |
|
|
|
|
|
|
|
|
|
| Sequence
Features |
|
|
|
|
|
|
|
|
| AnalyCys |
|
|
|
|
|
|
|
|
|
| BindN |
|
|
|
|
|
|
|
|
|
| BioBayesNet |
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| CanPredict |
|
|
|
|
|
|
|
|
| CBS DAS protein
viewer |
|
|
|
|
|
|
|
| CCRXP |
|
|
|
|
|
|
|
|
|
| CLIP |
|
|
|
|
|
|
|
|
|
| ConSeq |
|
|
|
|
|
|
|
|
|
| CRP |
|
|
|
|
|
|
|
|
|
| DiANNA |
|
|
|
|
|
|
|
|
|
| DISULFIND |
|
|
|
|
|
|
|
|
| DR.Bind |
|
|
|
|
|
|
|
|
|
| DrugScorePPI |
|
|
|
|
|
|
|
|
| E1DS |
|
|
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| ffpred |
|
|
|
|
|
|
|
|
|
| GDAP |
|
|
|
|
|
|
|
|
|
| HHrep |
|
|
|
|
|
|
|
|
|
| HotSpot
Wizard |
|
|
|
|
|
|
|
|
| INTREPID |
|
|
|
|
|
|
|
|
|
| LogoBar |
|
|
|
|
|
|
|
|
|
| LowComplexity |
|
|
|
|
|
|
|
|
| MAGIIC-PRO |
|
|
|
|
|
|
|
|
| MEME Suite |
|
|
|
|
|
|
|
|
| MeMo |
|
|
|
|
|
|
|
|
|
| MetalDetector |
|
|
|
|
|
|
|
|
| Multi-Harmony |
|
|
|
|
|
|
|
|
| NAPS |
|
|
|
|
|
|
|
|
|
| NetPhosK |
|
|
|
|
|
|
|
|
|
| NetPhos |
|
|
|
|
|
|
|
|
|
| NeuroPred |
|
|
|
|
|
|
|
|
| NRSAS |
|
|
|
|
|
|
|
|
|
| Pcleavage |
|
|
|
|
|
|
|
|
|
| PepServe |
|
|
|
|
|
|
|
|
|
| PiRaNhA |
|
|
|
|
|
|
|
|
|
| PROFEAT |
|
|
|
|
|
|
|
|
|
| ProteDNA |
|
|
|
|
|
|
|
|
|
| Protein CCD |
|
|
|
|
|
|
|
|
| ReMus |
|
|
|
|
|
|
|
|
|
| REPPER |
|
|
|
|
|
|
|
|
|
| RPBS |
|
|
|
|
|
|
|
|
|
| Selectome |
|
|
|
|
|
|
|
|
|
| SIFT |
|
|
|
|
|
|
|
|
|
| SLiMSearch |
|
|
|
|
|
|
|
|
| SPEER-SERVER |
|
|
|
|
|
|
|
|
| SVM-PROT |
|
|
|
|
|
|
|
|
|
| The Sequence
Manipulation Suite 2 |
|
|
|
|
|
|
| TMSOC |
|
|
|
|
|
|
|
|
|
| Viral Bioinformatics |
|
|
|
|
|
|
|
|
| WebMOTIFS |
|
|
|
|
|
|
|
|
|
|
|
| Sequence
Data |
|
|
|
|
|
|
|
|
|
| cpnDB |
|
|
|
|
|
|
|
|
|
| Entrez |
|
|
|
|
|
|
|
|
|
| IPI - International Protein
Index |
|
|
|
|
|
|
|
| MMDB |
|
|
|
|
|
|
|
|
|
| PIR - Protein Information
Resource |
|
|
|
|
|
|
| Protein CCD |
|
|
|
|
|
|
|
|
| RCSB Protein Data Bank |
|
|
|
|
|
|
|
| SEQATOMS |
|
|
|
|
|
|
|
|
| Swiss-Prot and TrEMBL |
|
|
|
|
|
|
|
| Sequence
Revrieval |
|
|
|
|
|
|
|
|
| AliasServer |
|
|
|
|
|
|
|
|
| BioMart |
|
|
|
|
|
|
|
|
|
| Bioverse |
|
|
|
|
|
|
|
|
|
| BLAST |
|
|
|
|
|
|
|
|
|
| BLAST2SRS |
|
|
|
|
|
|
|
|
| Cascade PSI-BLAST |
|
|
|
|
|
|
|
|
| cpnDB |
|
|
|
|
|
|
|
|
|
| DASMIweb |
|
|
|
|
|
|
|
|
| EBI Tools |
|
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| Entrez |
|
|
|
|
|
|
|
|
|
| FeatureExtract |
|
|
|
|
|
|
|
|
| Gene Set Builder |
|
|
|
|
|
|
|
|
| GenomeNet |
|
|
|
|
|
|
|
|
| HGNC |
|
|
|
|
|
|
|
|
|
| MartView |
|
|
|
|
|
|
|
|
|
| MIGenAS Toolkit |
|
|
|
|
|
|
|
|
| MRS |
|
|
|
|
|
|
|
|
|
| NLProt |
|
|
|
|
|
|
|
|
|
| PISCES |
|
|
|
|
|
|
|
|
|
| Protein CCD |
|
|
|
|
|
|
|
|
| PubCrawler |
|
|
|
|
|
|
|
|
| SIRW |
|
|
|
|
|
|
|
|
|
| SOURCE |
|
|
|
|
|
|
|
|
|
| Swiss-Shop |
|
|
|
|
|
|
|
|
| EMBL-EBI |
|
|
|
|
|
|
|
|
|
| UniqueProt |
|
|
|
|
|
|
|
|
| YOGY |
|
|
|
|
|
|
|
|
|
|
| RNA |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Databases |
|
|
|
|
|
|
|
|
|
| AREsite |
|
|
|
|
|
|
|
|
|
| BioMart |
|
|
|
|
|
|
|
|
|
| CellBase |
|
|
|
|
|
|
|
|
|
| CLIPZ |
|
|
|
|
|
|
|
|
|
| deepBase |
|
|
|
|
|
|
|
|
|
| ENCODE DCC |
|
|
|
|
|
|
|
|
| Full-parasites |
|
|
|
|
|
|
|
|
| IRESite |
|
|
|
|
|
|
|
|
|
| lncRNAdb |
|
|
|
|
|
|
|
|
|
| mESAdb |
|
|
|
|
|
|
|
|
|
| miRBase |
|
|
|
|
|
|
|
|
|
| miRGator v2.0 |
|
|
|
|
|
|
|
|
| miRGen |
|
|
|
|
|
|
|
|
|
| miRTarBase |
|
|
|
|
|
|
|
|
| MitoGenesisDB |
|
|
|
|
|
|
|
|
| NCBI Resources |
|
|
|
|
|
|
|
|
| PRIDB |
|
|
|
|
|
|
|
|
|
| RBPDB |
|
|
|
|
|
|
|
|
|
| RepTar |
|
|
|
|
|
|
|
|
|
| Rfam |
|
|
|
|
|
|
|
|
|
| RNA helicase database |
|
|
|
|
|
|
|
|
| StarBase |
|
|
|
|
|
|
|
|
|
| EMBL-EBI |
|
|
|
|
|
|
|
|
|
| RNAMDB |
|
|
|
|
|
|
|
|
|
| tRNADB-CE |
|
|
|
|
|
|
|
|
| Functional
RNAs |
|
|
|
|
|
|
|
|
| corRna |
|
|
|
|
|
|
|
|
|
| CPC |
|
|
|
|
|
|
|
|
|
| Crosslink |
|
|
|
|
|
|
|
|
|
| CRSD |
|
|
|
|
|
|
|
|
|
| DARIO |
|
|
|
|
|
|
|
|
|
| DIANA miRPath |
|
|
|
|
|
|
|
|
| DIANA-microT |
|
|
|
|
|
|
|
|
| DSAP |
|
|
|
|
|
|
|
|
|
| Freiburg RNA
Tools |
|
|
|
|
|
|
|
|
| MAGIA2 |
|
|
|
|
|
|
|
|
|
| MAGNOLIA |
|
|
|
|
|
|
|
|
| MicroInspector |
|
|
|
|
|
|
|
|
| miPred |
|
|
|
|
|
|
|
|
|
| mirACT |
|
|
|
|
|
|
|
|
|
| miRanalyzer |
|
|
|
|
|
|
|
|
| mirTools |
|
|
|
|
|
|
|
|
|
| miRU |
|
|
|
|
|
|
|
|
|
| MirZ |
|
|
|
|
|
|
|
|
|
| MMIA |
|
|
|
|
|
|
|
|
|
| ncFANs |
|
|
|
|
|
|
|
|
|
| Non-Coding RNA
database |
|
|
|
|
|
|
|
| PLAST-ncRNA |
|
|
|
|
|
|
|
|
| PRince |
|
|
|
|
|
|
|
|
|
| psRNATarget |
|
|
|
|
|
|
|
|
| psRobot |
|
|
|
|
|
|
|
|
|
| pssRNAMiner |
|
|
|
|
|
|
|
|
| QGRS-H
Predictor |
|
|
|
|
|
|
|
|
| R-Coffee |
|
|
|
|
|
|
|
|
|
| RegRNA |
|
|
|
|
|
|
|
|
|
| Rfam |
|
|
|
|
|
|
|
|
|
| Ribosomal Database Project |
|
|
|
|
|
|
|
| RNAhybrid |
|
|
|
|
|
|
|
|
| RNAmmer |
|
|
|
|
|
|
|
|
|
| RNApredator |
|
|
|
|
|
|
|
|
| SARA |
|
|
|
|
|
|
|
|
|
| SCOR |
|
|
|
|
|
|
|
|
|
| snoGPS |
|
|
|
|
|
|
|
|
|
| Snoscan |
|
|
|
|
|
|
|
|
|
| SNPinfo |
|
|
|
|
|
|
|
|
|
| Software.ncrna.org |
|
|
|
|
|
|
|
|
| TargetRNA |
|
|
|
|
|
|
|
|
|
| taveRNA |
|
|
|
|
|
|
|
|
|
| TFAM |
|
|
|
|
|
|
|
|
|
| tRNAscan-SE |
|
|
|
|
|
|
|
|
| WAR |
|
|
|
|
|
|
|
|
|
| xREI |
|
|
|
|
|
|
|
|
|
| General
Resources |
|
|
|
|
|
|
|
|
| Ambion Inc. Technical
Resources |
|
|
|
|
|
|
|
| Freiburg RNA
Tools |
|
|
|
|
|
|
|
|
| NAST |
|
|
|
|
|
|
|
|
|
| NDB |
|
|
|
|
|
|
|
|
|
| RNA folding
Servers |
|
|
|
|
|
|
|
|
| RNA
Informatics Links |
|
|
|
|
|
|
|
|
| RNA Studio |
|
|
|
|
|
|
|
|
| SCOR |
|
|
|
|
|
|
|
|
|
| TaxMan |
|
|
|
|
|
|
|
|
|
| The RNA World |
|
|
|
|
|
|
|
|
| The
Zuker Group |
|
|
|
|
|
|
|
|
| Motifs |
|
|
|
|
|
|
|
|
|
| DIAL |
|
|
|
|
|
|
|
|
|
| ERPIN |
|
|
|
|
|
|
|
|
|
| FOLDALIGN |
|
|
|
|
|
|
|
|
| Freiburg RNA
Tools |
|
|
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| ITS2 |
|
|
|
|
|
|
|
|
|
| MicroInspector |
|
|
|
|
|
|
|
|
| MoD Tools |
|
|
|
|
|
|
|
|
|
| NDB Tools |
|
|
|
|
|
|
|
|
|
| PatMatch |
|
|
|
|
|
|
|
|
|
| PREP Suite |
|
|
|
|
|
|
|
|
|
| QGRS
Mapper |
|
|
|
|
|
|
|
|
| QuadFinder |
|
|
|
|
|
|
|
|
| RADAR |
|
|
|
|
|
|
|
|
|
| RegRNA |
|
|
|
|
|
|
|
|
|
| Riboswitch finder |
|
|
|
|
|
|
|
|
| RNA Analyzer |
|
|
|
|
|
|
|
|
| RNAMOT |
|
|
|
|
|
|
|
|
|
| RNAMST |
|
|
|
|
|
|
|
|
|
| RSAT |
|
|
|
|
|
|
|
|
|
| SCOR |
|
|
|
|
|
|
|
|
|
| SIREs |
|
|
|
|
|
|
|
|
|
| Software.ncrna.org |
|
|
|
|
|
|
|
|
| WebFEATURE |
|
|
|
|
|
|
|
|
| WebFR3D |
|
|
|
|
|
|
|
|
|
| XXmotif |
|
|
|
|
|
|
|
|
|
| Sequence
Retrieval |
|
|
|
|
|
|
|
|
| BLAST |
|
|
|
|
|
|
|
|
|
| EBI Tools |
|
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| Entrez |
|
|
|
|
|
|
|
|
|
| FeatureExtract |
|
|
|
|
|
|
|
|
| PubCrawler |
|
|
|
|
|
|
|
|
| Ribosomal Database Project |
|
|
|
|
|
|
|
| RSAT |
|
|
|
|
|
|
|
|
|
| Software.ncrna.org |
|
|
|
|
|
|
|
|
| Structure
Prediction, Visualization and Design |
|
|
|
|
|
| ARTS |
|
|
|
|
|
|
|
|
|
| AsiDesigner |
|
|
|
|
|
|
|
|
| CARNA |
|
|
|
|
|
|
|
|
|
| CARNAC |
|
|
|
|
|
|
|
|
|
| CentroidFold |
|
|
|
|
|
|
|
|
| CentroidHomfold-LAST |
|
|
|
|
|
|
|
| CorreLogo |
|
|
|
|
|
|
|
|
|
| CyloFold |
|
|
|
|
|
|
|
|
|
| DEQOR |
|
|
|
|
|
|
|
|
|
| DIAL |
|
|
|
|
|
|
|
|
|
| DINAMelt |
|
|
|
|
|
|
|
|
|
| E-RNAi |
|
|
|
|
|
|
|
|
|
| ERPIN |
|
|
|
|
|
|
|
|
|
| FOLDALIGN |
|
|
|
|
|
|
|
|
| IDT
SciTools |
|
|
|
|
|
|
|
|
| ILM |
|
|
|
|
|
|
|
|
|
| INFO-RNA |
|
|
|
|
|
|
|
|
|
| ITS2 |
|
|
|
|
|
|
|
|
|
| K2N |
|
|
|
|
|
|
|
|
|
| Kinefold |
|
|
|
|
|
|
|
|
|
| KOSMOS |
|
|
|
|
|
|
|
|
|
| LocalMove |
|
|
|
|
|
|
|
|
| Mfold |
|
|
|
|
|
|
|
|
|
| MolMovDB |
|
|
|
|
|
|
|
|
| MolProbity |
|
|
|
|
|
|
|
|
| MoViES |
|
|
|
|
|
|
|
|
|
| NDB Tools |
|
|
|
|
|
|
|
|
|
| NOBAI |
|
|
|
|
|
|
|
|
|
| OligoWalk |
|
|
|
|
|
|
|
|
|
| PETfold and
PETcofold |
|
|
|
|
|
|
|
|
| Pfold |
|
|
|
|
|
|
|
|
|
| pknotsRG |
|
|
|
|
|
|
|
|
|
| PSEUDOVIEWER |
|
|
|
|
|
|
|
|
| psRobot |
|
|
|
|
|
|
|
|
|
| QGRS
Mapper |
|
|
|
|
|
|
|
|
| QuadFinder |
|
|
|
|
|
|
|
|
| R3D-BLAST |
|
|
|
|
|
|
|
|
| RADAR |
|
|
|
|
|
|
|
|
|
| RNA Analyzer |
|
|
|
|
|
|
|
|
| RNA
Movies |
|
|
|
|
|
|
|
|
| RNA Studio |
|
|
|
|
|
|
|
|
| RNAbor |
|
|
|
|
|
|
|
|
|
| RNAfold |
|
|
|
|
|
|
|
|
|
| RNALogo |
|
|
|
|
|
|
|
|
|
| RNALOSS |
|
|
|
|
|
|
|
|
|
| RNAmute |
|
|
|
|
|
|
|
|
|
| RNAmutants |
|
|
|
|
|
|
|
|
| RNAsoft |
|
|
|
|
|
|
|
|
|
| RNAz |
|
|
|
|
|
|
|
|
|
| Rtips |
|
|
|
|
|
|
|
|
|
| SARA |
|
|
|
|
|
|
|
|
|
| SAVoR |
|
|
|
|
|
|
|
|
|
| SEM |
|
|
|
|
|
|
|
|
|
| SETTER |
|
|
|
|
|
|
|
|
|
| Sfold |
|
|
|
|
|
|
|
|
|
| siDirect |
|
|
|
|
|
|
|
|
|
| siRNA Selection
Server |
|
|
|
|
|
|
|
|
| siRNAdb |
|
|
|
|
|
|
|
|
|
| siVirus |
|
|
|
|
|
|
|
|
|
| SStructView |
|
|
|
|
|
|
|
|
| taveRNA |
|
|
|
|
|
|
|
|
|
| TROD |
|
|
|
|
|
|
|
|
|
| Vienna RNA
Package |
|
|
|
|
|
|
|
|
| Vienna RNA Websuite |
|
|
|
|
|
|
|
|
| WAR |
|
|
|
|
|
|
|
|
|
| WebFEATURE |
|
|
|
|
|
|
|
|
| WebFR3D |
|
|
|
|
|
|
|
|
|
|
| Sequence
Comparison |
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| |
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| Alignment
Editing and Visualization |
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| @TOME-2 |
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| ALLGEN |
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| BoxShade |
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| CHAOS/DIALIGN
WWW |
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| EMBL-EBI framework |
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| EMBOSS |
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| enoLOGOS |
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| EnteriX |
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| ESPript |
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| GeneDoc |
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| JOY |
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| Kalign,
Kalignvu, and Mumsa |
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| MIGenAS
Toolkit |
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| Seaview |
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| SequenceJuxtaposer |
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| SeqVISTA |
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| STRAP |
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| T-COFFEE |
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| TranslatorX |
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| Viral Bioinformatics |
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| WAViS |
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| WebGMAP |
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| WebLogo |
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| Analysis
of Aligned Sequences |
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| AGenDA |
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| ALLGEN |
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| ASmodeler |
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| Berkeley
Phylogenomics Group |
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| Blocks WWW Server |
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| CAMPO |
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| CGView
Server |
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| CHC_FIND |
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| ClanTox |
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| COMPASS |
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| ConSurf |
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| CorreLogo |
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| CRASP |
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| CSTminer |
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| ECR |
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| EMBL-EBI framework |
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| ENDscript |
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| eProbalign |
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| eShadow |
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| FeatureMap3D |
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| FFAS |
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| FGF |
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| GenomeTraFaC |
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| GOblet |
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| Godzilla |
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| Harmony |
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| INDELSCAN |
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| Jevtrace |
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| Kalign,
Kalignvu, and Mumsa |
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| LogoBar |
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| LowComplexity |
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| MaM |
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| MIGenAS |
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| MultiPhyl |
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| One-Block
CYRCA |
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| PAL2NAL |
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| PARSESNP |
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| PDA |
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| Phydbac2 |
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| PipeAlign |
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| PipMaker |
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| PLecDom |
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| PriFi |
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| Primaclade |
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| RNAz |
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| SCR_FIND |
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| SDPpred |
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| Selectome |
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| Selecton |
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| Seq2Logo |
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| SeqFIRE |
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| Sequence
Harmony |
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| T-COFFEE |
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| TreeDet |
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| TreeSAAP |
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| VisCoSe |
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| VISTA |
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| WebProAnalyst |
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| Comparative
Genomics |
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| agriGO |
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| ATIVS |
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| Berkeley
Phylogenomics Group |
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| CGView
Server |
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| CisMols |
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| CMR |
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| COGs |
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| CoMet |
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| DAVID
Bioinformatics Resources |
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| DCODE.ORG |
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| EnteriX |
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| G-SESAME |
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| GeConT |
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| GenomeTraFaC |
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| Insignia |
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| IMG |
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| ISC |
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| KAAS |
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| KOMODO |
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| MEME Suite |
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| METAGENassist |
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| mGenomeSubtractor |
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| MGIP |
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| MicroFootPrinter |
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| MIPS |
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| MLST |
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| MobilomeFINDER |
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| PartiGeneDB |
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| PhenoHM |
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| PhenomicDB |
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| Phydbac2 |
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| Projector
2 |
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| RegPredict |
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| SOBA |
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| Sockeye |
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| SPRING |
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| TIGR |
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| TraFaC |
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| Viral Bioinformatics |
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| VISTA |
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| YOGY |
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| Multiple
Sequence Alignments |
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| ALLGEN |
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| ALTER |
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| antiSMASH |
|
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|
|
| Berkeley
Phylogenomics Group |
|
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| Bioinformatics
Toolkit |
|
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| BLASTO |
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| CARNA |
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| CE-MC |
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| CHAOS/DIALIGN
WWW server |
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| Chinook |
|
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| ClustalW |
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| DIALIGN |
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| DIALIGN-TX |
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| EBI Tools |
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| eBioinformatics |
|
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| EMBL-EBI framework |
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| EMBOSS |
|
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| ENDscript |
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| EnteriX |
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| eProbalign |
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| eShadow |
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| FFAS |
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| FGF |
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| firestar |
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| FISH |
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| Freiburg RNA
Tools |
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| GenDecoder |
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| GUIDANCE |
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| HHsenser |
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| HMMER Web Server |
|
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| IBM
Bioinformatics and Pattern Discovery Group |
|
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| jpHMM |
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| Kalign,
Kalignvu, and Mumsa |
|
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| LAGAN |
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| MAGIIC-PRO |
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| MAGNOLIA |
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| MAPPIS |
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| MATRAS |
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| MIGenAS Toolkit |
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| MPI Toolkit |
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| Mulan |
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| Multi-Harmony |
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| MultiBind |
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| MyHits |
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| NAST |
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| Phylemon |
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| PicXAA-Web |
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| PipeAlign |
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| Praline |
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| PROMALS and
PROMALS3D |
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| RevTrans |
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| RNALogo |
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| SATCHMO-JS |
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| Software.ncrna.org |
|
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| STRAP |
|
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| T-COFFEE |
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| EMBL-EBI) |
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| TranslatorX |
|
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| TreeDomViewer |
|
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| Viral Bioinformatics |
|
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| VISTA |
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| webPRC |
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| zPicture and
multi-zPicture |
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| Other
Alignment Tools |
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| ASPic |
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| E2G |
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| Genotyping - NCBI |
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| HHrep |
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| HMMER Web Server |
|
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| Iccare |
|
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| IMGT/V-QUEST |
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| MaxAlign |
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| PAL2NAL |
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| SIM4 |
|
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| T-COFFEE |
|
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| Wise2 |
|
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|
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| PairWise
Sequence Alignment |
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|
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| Chinook |
|
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|
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| Crosslink |
|
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| Dotlet |
|
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| DSP |
|
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|
|
| eBioinformatics |
|
|
|
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|
|
| EMBOSS |
|
|
|
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|
|
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|
|
| EnteriX |
|
|
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|
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| FFAS |
|
|
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|
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|
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| FISH |
|
|
|
|
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|
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| LAGAN |
|
|
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|
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| MATRAS |
|
|
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|
|
|
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|
|
| MGIP |
|
|
|
|
|
|
|
|
|
| MIGenAS Toolkit |
|
|
|
|
|
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|
|
| MPI Toolkit |
|
|
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|
|
| MPSRCH |
|
|
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|
|
| OrthoSelect |
|
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|
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| ParAlign |
|
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| PLAST-ncRNA |
|
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| PLecDom |
|
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| PlotRep |
|
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|
| PromoterWise |
|
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|
|
| QGRS-H
Predictor |
|
|
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|
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| SCANPS |
|
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|
|
| SIB-BLAST |
|
|
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|
|
| Software.ncrna.org |
|
|
|
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|
|
| SWAKK |
|
|
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|
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| TOPCONS |
|
|
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|
|
| Viral Bioinformatics |
|
|
|
|
|
|
|
|
| WebGMAP |
|
|
|
|
|
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|
|
| YASS |
|
|
|
|
|
|
|
|
|
| zPicture and
multi-zPicture |
|
|
|
|
|
|
|
| Similarity
Searching and Classification |
|
|
|
|
|
|
| AlgPred |
|
|
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|
|
| BLAST |
|
|
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| BLAST2SRS |
|
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|
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| BLASTO |
|
|
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|
|
| Cascade PSI-Blast |
|
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|
|
| CHOP |
|
|
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|
|
| COMPASS |
|
|
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|
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| ConoDictor |
|
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|
|
| Crosslink |
|
|
|
|
|
|
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|
|
| DOUTfinder |
|
|
|
|
|
|
|
|
| EBI Tools |
|
|
|
|
|
|
|
|
|
| eBioinformatics |
|
|
|
|
|
|
|
|
| EMBL-EBI Framework |
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| FASTA Programs |
|
|
|
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|
|
|
|
| fastSCOP |
|
|
|
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|
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|
|
| FeatureMap3D |
|
|
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|
|
| FeatureScan |
|
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|
| FGF |
|
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|
|
| firestar |
|
|
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|
|
| FISH |
|
|
|
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|
|
| FluGenome |
|
|
|
|
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|
|
|
| GGRNA |
|
|
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|
|
| HHpred |
|
|
|
|
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|
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|
|
| HHrep |
|
|
|
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|
|
| HHsenser |
|
|
|
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|
|
| HMMER |
|
|
|
|
|
|
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|
|
| HMMER Web Server |
|
|
|
|
|
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|
|
| HorA |
|
|
|
|
|
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|
|
| Meta-BASIC |
|
|
|
|
|
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|
|
| MIGenAS Toolkit |
|
|
|
|
|
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|
|
| MPI Toolkit |
|
|
|
|
|
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|
|
| Onto-Tools |
|
|
|
|
|
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|
|
| Open HUSAR |
|
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|
|
| ParAlign |
|
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|
|
| Pcons.net |
|
|
|
|
|
|
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|
|
| PlotRep |
|
|
|
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|
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|
|
| PPISearch |
|
|
|
|
|
|
|
|
|
| QSCOP -
BLAST |
|
|
|
|
|
|
|
|
| R3D-BLAST |
|
|
|
|
|
|
|
|
| SCANMOT |
|
|
|
|
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|
|
| T-COFFEE |
|
|
|
|
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|
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|
|
| TACT |
|
|
|
|
|
|
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|
|
| Taverna |
|
|
|
|
|
|
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|
|
| EMBL-EBI |
|
|
|
|
|
|
|
|
|
| TMSOC |
|
|
|
|
|
|
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|
|
| Viral Bioinformatics |
|
|
|
|
|
|
|
|
| WhETS |
|
|
|
|
|
|
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|
|
| YASS |
|
|
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|
|
| Human
Genome |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Annotations |
|
|
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|
|
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|
|
| Apollo Genome
Annotation and Curation Tool |
|
|
|
|
|
|
| Artemis |
|
|
|
|
|
|
|
|
|
| Babelomics |
|
|
|
|
|
|
|
|
| Bioinformatics
Toolkit |
|
|
|
|
|
|
|
|
| BioPortal |
|
|
|
|
|
|
|
|
|
| Bioverse |
|
|
|
|
|
|
|
|
|
| CARGO |
|
|
|
|
|
|
|
|
|
| CBS DAS protein
viewer |
|
|
|
|
|
|
|
| DAVID
Bioinformatics Resources |
|
|
|
|
|
|
|
| DNannotator |
|
|
|
|
|
|
|
|
| Ensembl Genome Browser |
|
|
|
|
|
|
|
| FeatureExtract |
|
|
|
|
|
|
|
|
| Gene Set Builder |
|
|
|
|
|
|
|
|
| Human Genome Variation
Nomenclature |
|
|
|
|
|
|
| IBM
Bioinformatics and Pattern Discovery Group |
|
|
|
|
|
| INTEGRALL |
|
|
|
|
|
|
|
|
| InterProScan |
|
|
|
|
|
|
|
|
| MADAP |
|
|
|
|
|
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|
|
| MagicViewer |
|
|
|
|
|
|
|
|
| MartView |
|
|
|
|
|
|
|
|
|
| MetaMHC |
|
|
|
|
|
|
|
|
|
| Mutalyzer |
|
|
|
|
|
|
|
|
|
| NCBI Human DNA
Reference Sequence |
|
|
|
|
|
|
| NCBI
Map Viewer |
|
|
|
|
|
|
|
|
| ncFANs |
|
|
|
|
|
|
|
|
|
| ORegAnno |
|
|
|
|
|
|
|
|
|
| PANTHER Tools |
|
|
|
|
|
|
|
|
| Pegasys:
workflow management for bioinformatics |
|
|
|
|
|
| RSSsite |
|
|
|
|
|
|
|
|
|
| Sequin |
|
|
|
|
|
|
|
|
|
| SerbGO |
|
|
|
|
|
|
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|
|
| TACT |
|
|
|
|
|
|
|
|
|
| Taverna |
|
|
|
|
|
|
|
|
|
| text2Genome |
|
|
|
|
|
|
|
|
| TFM-Explorer |
|
|
|
|
|
|
|
|
| The Chromosome 7 Annotation
Project |
|
|
|
|
|
|
| UCSC Human Genome Browser Gateway |
|
|
|
|
|
|
| Ulysses |
|
|
|
|
|
|
|
|
|
| Users Guide to the Human Genome |
|
|
|
|
|
|
| Vega Annotation Browser |
|
|
|
|
|
|
|
| WEGO |
|
|
|
|
|
|
|
|
|
| Databases |
|
|
|
|
|
|
|
|
|
| Allele frequency
net |
|
|
|
|
|
|
|
|
| AntigenDB |
|
|
|
|
|
|
|
|
|
| ASPicDB |
|
|
|
|
|
|
|
|
|
| CellBase |
|
|
|
|
|
|
|
|
|
| ConsensusPathDB |
|
|
|
|
|
|
|
|
| COSMIC |
|
|
|
|
|
|
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|
|
| dbDEPC |
|
|
|
|
|
|
|
|
|
| FANTOM |
|
|
|
|
|
|
|
|
|
| FIND base |
|
|
|
|
|
|
|
|
|
| Gene
Wiki |
|
|
|
|
|
|
|
|
|
| H-InvDB |
|
|
|
|
|
|
|
|
|
| HLungDB |
|
|
|
|
|
|
|
|
|
| HRTBLDb |
|
|
|
|
|
|
|
|
|
| IGDD |
|
|
|
|
|
|
|
|
|
| IMGT/HLA database |
|
|
|
|
|
|
|
|
| IEDB |
|
|
|
|
|
|
|
|
|
| IPD |
|
|
|
|
|
|
|
|
|
| KOBAS |
|
|
|
|
|
|
|
|
|
| NCBI Resources |
|
|
|
|
|
|
|
|
| Network of Cancer
Genes |
|
|
|
|
|
|
|
| Patrocles |
|
|
|
|
|
|
|
|
|
| PolyQ |
|
|
|
|
|
|
|
|
|
| PrimerBank |
|
|
|
|
|
|
|
|
| Reactome |
|
|
|
|
|
|
|
|
|
| SAHG |
|
|
|
|
|
|
|
|
|
| SCLD |
|
|
|
|
|
|
|
|
|
| SelTarbase |
|
|
|
|
|
|
|
|
|
| SPIKE |
|
|
|
|
|
|
|
|
|
| T1DBase |
|
|
|
|
|
|
|
|
|
| EMBL-EBI |
|
|
|
|
|
|
|
|
|
| TIARA |
|
|
|
|
|
|
|
|
|
| UCSC Genome Browser |
|
|
|
|
|
|
|
| Ethics |
|
|
|
|
|
|
|
|
|
| Center for Law and Genetics |
|
|
|
|
|
|
|
| Ethical, Legal, and Social Issues - Genome Research |
|
|
|
|
|
| Genethics.ca - The Genetics
& Ethics page |
|
|
|
|
|
|
| HumGen |
|
|
|
|
|
|
|
|
|
| NHGRI Policy and
Ethics |
|
|
|
|
|
|
|
| Genomics |
|
|
|
|
|
|
|
|
|
| AutoClass@IJM |
|
|
|
|
|
|
|
|
| BiForce Toolbox |
|
|
|
|
|
|
|
|
| DIANA-microT |
|
|
|
|
|
|
|
|
| Gendoo |
|
|
|
|
|
|
|
|
|
| GeneMANIA |
|
|
|
|
|
|
|
|
| Genome Hub |
|
|
|
|
|
|
|
|
| GSA-SNP |
|
|
|
|
|
|
|
|
|
| Human Genome Variation
Nomenclature |
|
|
|
|
|
|
| i-GSEA4GWAS |
|
|
|
|
|
|
|
|
| ICSNPathway |
|
|
|
|
|
|
|
|
| IGG |
|
|
|
|
|
|
|
|
|
| INTERFEROME |
|
|
|
|
|
|
|
|
| mGene.web |
|
|
|
|
|
|
|
|
| mirTools |
|
|
|
|
|
|
|
|
|
| MMIA |
|
|
|
|
|
|
|
|
|
| Mutalyzer |
|
|
|
|
|
|
|
|
|
| Nature's
Genome Gateway |
|
|
|
|
|
|
|
| SteinerNet |
|
|
|
|
|
|
|
|
|
| THREaD Mapper
Studio |
|
|
|
|
|
|
|
| UCSC Cancer Genomics
Browser |
|
|
|
|
|
|
|
| WebGMAP |
|
|
|
|
|
|
|
|
| Other
Resources |
|
|
|
|
|
|
|
|
| BEARR |
|
|
|
|
|
|
|
|
|
| CREME |
|
|
|
|
|
|
|
|
|
| DCODE.ORG |
|
|
|
|
|
|
|
|
| Gene Set Builder |
|
|
|
|
|
|
|
|
| GeneHub-GEPIS |
|
|
|
|
|
|
|
|
| Genome
Centres and Databases |
|
|
|
|
|
|
|
| GenomeNet |
|
|
|
|
|
|
|
|
| HGNC |
|
|
|
|
|
|
|
|
|
| HMDB |
|
|
|
|
|
|
|
|
|
| HAGR |
|
|
|
|
|
|
|
|
|
| Human Genome Variation
Nomenclature |
|
|
|
|
|
|
| IDconverter |
|
|
|
|
|
|
|
|
| Idiographica |
|
|
|
|
|
|
|
|
| Integr8 |
|
|
|
|
|
|
|
|
|
| LIPID MAPS |
|
|
|
|
|
|
|
|
| Mammalian Gene Collection |
|
|
|
|
|
|
|
| Medical
Acronym Finder |
|
|
|
|
|
|
|
| Mutalyzer |
|
|
|
|
|
|
|
|
|
| Neuroscience Information
Framework |
|
|
|
|
|
|
| PrimerStation |
|
|
|
|
|
|
|
|
| SBT
Interface - dbMHC |
|
|
|
|
|
|
|
|
| SOURCE |
|
|
|
|
|
|
|
|
|
| SVMHC |
|
|
|
|
|
|
|
|
|
| TCAG |
|
|
|
|
|
|
|
|
|
| TFBScluster |
|
|
|
|
|
|
|
|
| The
Sequence Ontology Project |
|
|
|
|
|
|
|
| TIGR Gene
Indices |
|
|
|
|
|
|
|
|
| Users Guide to the Human Genome |
|
|
|
|
|
|
| WikiGene |
|
|
|
|
|
|
|
|
|
| Health
and Disease |
|
|
|
|
|
|
|
|
| AVPpred |
|
|
|
|
|
|
|
|
|
| BiForce Toolbox |
|
|
|
|
|
|
|
|
| Canada Health
Infoway |
|
|
|
|
|
|
|
| Cancer Genome Anatomy
Project |
|
|
|
|
|
|
|
| CanPredict |
|
|
|
|
|
|
|
|
| CARGO |
|
|
|
|
|
|
|
|
|
| DyNAVacS |
|
|
|
|
|
|
|
|
|
| EpiToolKit |
|
|
|
|
|
|
|
|
|
| FluGenome |
|
|
|
|
|
|
|
|
| G2D |
|
|
|
|
|
|
|
|
|
| GeneCards |
|
|
|
|
|
|
|
|
|
| GeneSeeker |
|
|
|
|
|
|
|
|
| GeneTests |
|
|
|
|
|
|
|
|
|
| GeSBAP |
|
|
|
|
|
|
|
|
|
| HomozygosityMapper |
|
|
|
|
|
|
|
|
| Human Gene
Mutation Database |
|
|
|
|
|
|
|
| IEDB-AR |
|
|
|
|
|
|
|
|
|
| MGIP |
|
|
|
|
|
|
|
|
|
| MIRU-VNTRplus |
|
|
|
|
|
|
|
|
| NetNHC-3.0 |
|
|
|
|
|
|
|
|
| OMIM |
|
|
|
|
|
|
|
|
|
| OpiTope |
|
|
|
|
|
|
|
|
|
| PEPVAC |
|
|
|
|
|
|
|
|
|
| PosMed |
|
|
|
|
|
|
|
|
|
| Prospectr |
|
|
|
|
|
|
|
|
|
| Satellog |
|
|
|
|
|
|
|
|
|
| SNP@Domain |
|
|
|
|
|
|
|
|
| SPOT |
|
|
|
|
|
|
|
|
|
| SurvNet |
|
|
|
|
|
|
|
|
|
| The Chromosome 7 Annotation
Project |
|
|
|
|
|
|
| UCSC Cancer Genomics
Browser |
|
|
|
|
|
|
|
| VarioWatch |
|
|
|
|
|
|
|
|
| Sequence
Polymorphisms |
|
|
|
|
|
|
|
| AutoSNPdb |
|
|
|
|
|
|
|
|
| Cancer Genome Anatomy
Project |
|
|
|
|
|
|
|
| CanPredict |
|
|
|
|
|
|
|
|
| CARGO |
|
|
|
|
|
|
|
|
|
| dbSNP |
|
|
|
|
|
|
|
|
|
| DNA Methylation Database |
|
|
|
|
|
|
|
| EpiToolKit |
|
|
|
|
|
|
|
|
|
| FastSNP |
|
|
|
|
|
|
|
|
|
| GeSBAP |
|
|
|
|
|
|
|
|
|
| GVS |
|
|
|
|
|
|
|
|
|
| HGVbase |
|
|
|
|
|
|
|
|
|
| HomozygosityMapper |
|
|
|
|
|
|
|
|
| Human Genome Variation
Nomenclature |
|
|
|
|
|
|
| i-GSEA4GWAS |
|
|
|
|
|
|
|
|
| ICSNPathway |
|
|
|
|
|
|
|
|
| International
HapMap Project |
|
|
|
|
|
|
|
| ISTECH
SNPAnalyzer |
|
|
|
|
|
|
|
|
| KD4v |
|
|
|
|
|
|
|
|
|
| LOVD |
|
|
|
|
|
|
|
|
|
| MagicViewer |
|
|
|
|
|
|
|
|
| Mutalyzer |
|
|
|
|
|
|
|
|
|
| nsSNPAnalyzer |
|
|
|
|
|
|
|
|
| OpiTope |
|
|
|
|
|
|
|
|
|
| ORegAnno |
|
|
|
|
|
|
|
|
|
| PANTHER Tools |
|
|
|
|
|
|
|
|
| PARSESNP |
|
|
|
|
|
|
|
|
|
| PDA |
|
|
|
|
|
|
|
|
|
| PolyBayes |
|
|
|
|
|
|
|
|
|
| PolyPhen |
|
|
|
|
|
|
|
|
|
| PolyPhred |
|
|
|
|
|
|
|
|
|
| Primer Z |
|
|
|
|
|
|
|
|
|
| PupaSuite |
|
|
|
|
|
|
|
|
|
| QuickSNP |
|
|
|
|
|
|
|
|
|
| QUMA |
|
|
|
|
|
|
|
|
|
| SBT
Interface - dbMHC |
|
|
|
|
|
|
|
|
| SIFT |
|
|
|
|
|
|
|
|
|
| SIFT " |
|
|
|
|
|
|
|
|
|
| SNP
Cutter |
|
|
|
|
|
|
|
|
| SNP@Domain |
|
|
|
|
|
|
|
|
| SNPbox |
|
|
|
|
|
|
|
|
|
| SNPmasker |
|
|
|
|
|
|
|
|
| SNPnexus |
|
|
|
|
|
|
|
|
|
| SNPsyn |
|
|
|
|
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|
|
| SPOT |
|
|
|
|
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|
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|
|
| StSNP |
|
|
|
|
|
|
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|
|
| SVMHC |
|
|
|
|
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|
|
|
|
| The SNP Consortium |
|
|
|
|
|
|
|
|
| VARIANT |
|
|
|
|
|
|
|
|
|
| VarioWatch |
|
|
|
|
|
|
|
|
| waviCGH |
|
|
|
|
|
|
|
|
|
|
| BioExtract
Server |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Alignment
Tools |
|
|
|
|
|
|
|
|
| ClustalW2 |
|
|
|
|
|
|
|
|
|
| GeneSeqer |
|
|
|
|
|
|
|
|
|
| GeneSeqer_preprocessed_EST |
|
|
|
|
|
|
|
| GeneSeqer_protein |
|
|
|
|
|
|
|
|
| GenomeThreader_cdna |
|
|
|
|
|
|
|
| GenomeThreader_protein |
|
|
|
|
|
|
|
| ParseBlast |
|
|
|
|
|
|
|
|
|
| PlantGDBBLAST |
|
|
|
|
|
|
|
|
| SplicePredictor |
|
|
|
|
|
|
|
|
| cons |
|
|
|
|
|
|
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|
|
| TCoffee |
|
|
|
|
|
|
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|
|
| diffseq |
|
|
|
|
|
|
|
|
|
| emma |
|
|
|
|
|
|
|
|
|
| get_pgdbblast_rec |
|
|
|
|
|
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|
|
| needle |
|
|
|
|
|
|
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|
|
| plotcon |
|
|
|
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|
|
| polydot |
|
|
|
|
|
|
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|
|
| prettyplot |
|
|
|
|
|
|
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|
|
| showalign |
|
|
|
|
|
|
|
|
|
| Biomart |
|
|
|
|
|
|
|
|
|
| AURA |
|
|
|
|
|
|
|
|
|
| Goslim
Terms |
|
|
|
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|
|
| Gene |
|
|
|
|
|
|
|
|
|
| RegulatoryElement |
|
|
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|
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|
|
| Structure |
|
|
|
|
|
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|
|
| UTR |
|
|
|
|
|
|
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|
|
| Transcript |
|
|
|
|
|
|
|
|
|
| CpGAT |
|
|
|
|
|
|
|
|
|
| BGF_CpGAT |
|
|
|
|
|
|
|
|
| BLAST_CpGAT |
|
|
|
|
|
|
|
|
| CpGAT_Finish |
|
|
|
|
|
|
|
|
| CpGAT_Start |
|
|
|
|
|
|
|
|
| EVM_CpGAT |
|
|
|
|
|
|
|
|
| ExtractFullCDS_CpGAT |
|
|
|
|
|
|
|
| GeneMark_CpGAT |
|
|
|
|
|
|
|
|
| GenomeThreader_CpGAT |
|
|
|
|
|
|
|
| GetLongestORFs_CpGAT |
|
|
|
|
|
|
|
| GetPredictedmRNA_CpGAT |
|
|
|
|
|
|
|
| Solar_CpGAT |
|
|
|
|
|
|
|
|
| Vmatch_CpGAT |
|
|
|
|
|
|
|
|
| Information
Tools |
|
|
|
|
|
|
|
|
| Dragon_Annotated_Images |
|
|
|
|
|
|
|
| Fetch
Sequence Records |
|
|
|
|
|
|
|
| FetchTranslation |
|
|
|
|
|
|
|
|
| GenScan |
|
|
|
|
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|
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|
|
| GenScanSplitter |
|
|
|
|
|
|
|
|
| MuSeqBox |
|
|
|
|
|
|
|
|
|
| Protein Id
Mapper |
|
|
|
|
|
|
|
|
| Nucleic
Tools |
|
|
|
|
|
|
|
|
| RestrictionMapper |
|
|
|
|
|
|
|
|
| prophet |
|
|
|
|
|
|
|
|
|
| transeq |
|
|
|
|
|
|
|
|
|
| Phylogeny
Tools |
|
|
|
|
|
|
|
|
| Gblocks |
|
|
|
|
|
|
|
|
|
| MrBayes |
|
|
|
|
|
|
|
|
|
| MrModeltest |
|
|
|
|
|
|
|
|
| Paup |
|
|
|
|
|
|
|
|
|
| dnadist |
|
|
|
|
|
|
|
|
|
| dnapars |
|
|
|
|
|
|
|
|
|
| make_mb_nex |
|
|
|
|
|
|
|
|
| protdist |
|
|
|
|
|
|
|
|
|
| protpars |
|
|
|
|
|
|
|
|
|
| Protein
Tools |
|
|
|
|
|
|
|
|
| Prof |
|
|
|
|
|
|
|
|
|
| tmap |
|
|
|
|
|
|
|
|
|
| Similarity
Search Tools |
|
|
|
|
|
|
|
| blastn |
|
|
|
|
|
|
|
|
|
| blastp |
|
|
|
|
|
|
|
|
|
| blastx |
|
|
|
|
|
|
|
|
|
| tblastn |
|
|
|
|
|
|
|
|
|
| tblastx |
|
|
|
|
|
|
|
|
|
|
| Sequence
Presentation |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| FASTA 2 multiFASTA |
|
|
|
|
|
|
|
|
| DNA Baser Contig Assembler |
|
|
|
|
|
|
|
| AiO - All in One - AiO |
|
|
|
|
|
|
|
|
| ApE- A plasmid Editor |
|
|
|
|
|
|
|
|
| University College London |
|
|
|
|
|
|
|
| CLC bio |
|
|
|
|
|
|
|
|
|
| CLC bio |
|
|
|
|
|
|
|
|
|
| CLC bio |
|
|
|
|
|
|
|
|
|
| CLC bio |
|
|
|
|
|
|
|
|
|
| Technelysium |
|
|
|
|
|
|
|
|
| DNA
Baser - Free biology software |
|
|
|
|
|
|
|
| California
State University Fullerton |
|
|
|
|
|
|
| DNA for Windows |
|
|
|
|
|
|
|
|
| LMCP |
|
|
|
|
|
|
|
|
|
| Genomatix |
|
|
|
|
|
|
|
|
| Genamics |
|
|
|
|
|
|
|
|
|
| Fast chromatogram viewer |
|
|
|
|
|
|
|
| Genchek |
|
|
|
|
|
|
|
|
|
| Gene Construction Kit |
|
|
|
|
|
|
|
|
| Genowiz |
|
|
|
|
|
|
|
|
|
| GeneStudio LE |
|
|
|
|
|
|
|
|
| Geneious 1.0 |
|
|
|
|
|
|
|
|
| GoCore |
|
|
|
|
|
|
|
|
|
| LabCollector |
|
|
|
|
|
|
|
|
| MacVector |
|
|
|
|
|
|
|
|
| Plasmidomics 0.1 |
|
|
|
|
|
|
|
|
| RNA Baser - rRNA
sequence assembly and analysis |
|
|
|
|
|
| Redasoft |
|
|
|
|
|
|
|
|
|
| STRAP |
|
|
|
|
|
|
|
|
|
| Sequence Analysis for Mac
OS X |
|
|
|
|
|
|
|
| Serial
Cloner |
|
|
|
|
|
|
|
|
| Unipro UGENE |
|
|
|
|
|
|
|
|
| pDRAW32 |
|
|
|
|
|
|
|
|
|
|
| Sequence
Alignment |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Algin |
|
|
|
|
|
|
|
|
|
| AlleleID 4 |
|
|
|
|
|
|
|
|
|
| AlleleID version 6 |
|
|
|
|
|
|
|
|
| Bork's alignment tools |
|
|
|
|
|
|
|
|
| CINEMA |
|
|
|
|
|
|
|
|
|
| CLC Bioinformatics Cell |
|
|
|
|
|
|
|
| CONFAC |
|
|
|
|
|
|
|
|
|
| EBI |
|
|
|
|
|
|
|
|
|
| ClustalW
1.74 (Mac) |
|
|
|
|
|
|
|
|
| DNAtools |
|
|
|
|
|
|
|
|
|
| DIALIGN
2 |
|
|
|
|
|
|
|
|
|
| DiAlign |
|
|
|
|
|
|
|
|
|
| ElDorado/Gene2Promoter |
|
|
|
|
|
|
|
| Genecoder |
|
|
|
|
|
|
|
|
| Gendoc |
|
|
|
|
|
|
|
|
|
| Pfam |
|
|
|
|
|
|
|
|
|
| Sequence
Space |
|
|
|
|
|
|
|
|
|
| RNA
Structure Prediction |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Ascalaph |
|
|
|
|
|
|
|
|
|
| Primer Designs |
|
|
|
|
|
|
|
|
| Vienna RNA
Package |
|
|
|
|
|
|
|
|
| loopDloop |
|
|
|
|
|
|
|
|
|
| Protein
Structure Prediction |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| AGADIR |
|
|
|
|
|
|
|
|
|
| Abalone |
|
|
|
|
|
|
|
|
|
| CAChe |
|
|
|
|
|
|
|
|
|
| HMMTOP |
|
|
|
|
|
|
|
|
|
| Homology Modeling for
HyperChem |
|
|
|
|
|
|
| MB DNA Analysis |
|
|
|
|
|
|
|
|
| MONSTER |
|
|
|
|
|
|
|
|
|
| MacStripe |
|
|
|
|
|
|
|
|
|
| PROSAT |
|
|
|
|
|
|
|
|
|
| PSA |
|
|
|
|
|
|
|
|
|
| PSA Protein
Structure Prediction Server |
|
|
|
|
|
|
| ResNet |
|
|
|
|
|
|
|
|
|
| SAM-T99 |
|
|
|
|
|
|
|
|
|
| SWISS-MODEL |
|
|
|
|
|
|
|
|
| SimGlycan |
|
|
|
|
|
|
|
|
|
| YASARA |
|
|
|
|
|
|
|
|
|
| nnPredict |
|
|
|
|
|
|
|
|
|
|
| Protein
Structure Analysis |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ANALYZE ii |
|
|
|
|
|
|
|
|
|
| ARP/wARP |
|
|
|
|
|
|
|
|
|
| Abalone |
|
|
|
|
|
|
|
|
|
| Antibodies: Structure
and Sequence |
|
|
|
|
|
|
| Atlas
of Protein Side-chain Interactions |
|
|
|
|
|
|
| Cath: Protein Structure
Classification |
|
|
|
|
|
|
| DALI |
|
|
|
|
|
|
|
|
|
| DIG - Analysis, Reporting,
Intelligence |
|
|
|
|
|
|
| Database of
Macromolecular Movements |
|
|
|
|
|
|
| DomainFinder
1.0 |
|
|
|
|
|
|
|
|
| Enzyme
Structures Database |
|
|
|
|
|
|
|
| MOIL-View |
|
|
|
|
|
|
|
|
| Macromolecular
Geometry |
|
|
|
|
|
|
|
| Modules
in Extracellular Proteins |
|
|
|
|
|
|
|
| Nrl-3d Database |
|
|
|
|
|
|
|
|
| PDBsum |
|
|
|
|
|
|
|
|
|
| PROCHECK |
|
|
|
|
|
|
|
|
| Protein Motif Fingerprint Database |
|
|
|
|
|
|
| Sequences
Annotated By Structure |
|
|
|
|
|
|
| SURFNET v.1.4 |
|
|
|
|
|
|
|
|
|
|
| Protein
Sequence Analysis |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ABI to FASTA free converter |
|
|
|
|
|
|
|
| BioToolKit |
|
|
|
|
|
|
|
|
|
| ChloroP |
|
|
|
|
|
|
|
|
|
| Coli |
|
|
|
|
|
|
|
|
|
| Compute pI/MW |
|
|
|
|
|
|
|
|
| DIG |
|
|
|
|
|
|
|
|
|
| DNATools |
|
|
|
|
|
|
|
|
|
| Delila |
|
|
|
|
|
|
|
|
|
| DomainFinder
1.0 |
|
|
|
|
|
|
|
|
| Dotter |
|
|
|
|
|
|
|
|
|
| Drawhca |
|
|
|
|
|
|
|
|
|
| FindMod |
|
|
|
|
|
|
|
|
|
| Post-translational
Modifications |
|
|
|
|
|
|
|
| GeneCoder |
|
|
|
|
|
|
|
|
| GoCore |
|
|
|
|
|
|
|
|
|
| KoriBlast |
|
|
|
|
|
|
|
|
|
| MB DNA Analysis |
|
|
|
|
|
|
|
|
| NetOGlyc |
|
|
|
|
|
|
|
|
|
| NetPicoRNA |
|
|
|
|
|
|
|
|
| O-GlycBase |
|
|
|
|
|
|
|
|
| ORFer |
|
|
|
|
|
|
|
|
|
| PRATT (Unix) |
|
|
|
|
|
|
|
|
| PROSAT |
|
|
|
|
|
|
|
|
|
| PSORT |
|
|
|
|
|
|
|
|
|
| PSA |
|
|
|
|
|
|
|
|
|
| Peptide property calculator |
|
|
|
|
|
|
|
| PeptideMass |
|
|
|
|
|
|
|
|
| Pfam HMM
search |
|
|
|
|
|
|
|
|
| ProtParam |
|
|
|
|
|
|
|
|
| ProtScale |
|
|
|
|
|
|
|
|
|
| Protein Domain Profile Analysis |
|
|
|
|
|
|
|
| ProteinCenter |
|
|
|
|
|
|
|
|
| ProteoIQ |
|
|
|
|
|
|
|
|
|
| Randseq: Random
Protein Sequence Generator |
|
|
|
|
|
| SAM |
|
|
|
|
|
|
|
|
|
| SAPS |
|
|
|
|
|
|
|
|
|
| SAS |
|
|
|
|
|
|
|
|
|
| SMART |
|
|
|
|
|
|
|
|
|
| ScanPS |
|
|
|
|
|
|
|
|
|
| ScanProsite |
|
|
|
|
|
|
|
|
| Signal PC |
|
|
|
|
|
|
|
|
|
| SignalP |
|
|
|
|
|
|
|
|
|
| SimGlycan |
|
|
|
|
|
|
|
|
|
| Smart: Simple
Modular Architecture Research Tool |
|
|
|
|
|
| SSCP |
|
|
|
|
|
|
|
|
|
| Sssearch3 |
|
|
|
|
|
|
|
|
|
| Tmpred |
|
|
|
|
|
|
|
|
|
| WU-BLAST2: |
|
|
|
|
|
|
|
|
|
|
| Phylogenetic
Analysis |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| COMPARE |
|
|
|
|
|
|
|
|
|
| Chromatogram
Explorer-Exploring and trimming your chromatograms is not a problem anymore |
|
| CodonCode |
|
|
|
|
|
|
|
|
| GeneTree |
|
|
|
|
|
|
|
|
|
| MB DNA Analysis |
|
|
|
|
|
|
|
|
| Murka |
|
|
|
|
|
|
|
|
|
| PANGAEA |
|
|
|
|
|
|
|
|
|
| PHYLIP |
|
|
|
|
|
|
|
|
|
| Phylodendron |
|
|
|
|
|
|
|
|
| PhylodendronJava |
|
|
|
|
|
|
|
|
| Puzzle
3.1 |
|
|
|
|
|
|
|
|
|
| TreeView |
|
|
|
|
|
|
|
|
|
| TreeMap |
|
|
|
|
|
|
|
|
|
|
|
| PCR |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Array Designer 4 |
|
|
|
|
|
|
|
|
| Beacon Designer |
|
|
|
|
|
|
|
|
| Grid cell counter |
|
|
|
|
|
|
|
|
| In silico PCR, AFLP and PFGE
with bacteria |
|
|
|
|
|
|
| RNA Baser - rRNA
sequence assembly and analysis |
|
|
|
|
|
| RealTimeDesign�
qPCR Assay Design Software |
|
|
|
|
|
|
| pDRAW32 |
|
|
|
|
|
|
|
|
|
| tgge-star |
|
|
|
|
|
|
|
|
|
| Primer3 |
|
|
|
|
|
|
|
|
|
|
|
| Genome
Analysis |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ABI Trace
Data, Lab and Computer Protocols: Washington U.-Merck Human EST Project |
|
|
| Artemis |
|
|
|
|
|
|
|
|
|
| BLASTView |
|
|
|
|
|
|
|
|
| BibioSphere PathwayEdition |
|
|
|
|
|
|
|
| Codon Usage Database |
|
|
|
|
|
|
|
|
| Completed Genomes Search and Analysis |
|
|
|
|
|
|
| CoreGenes |
|
|
|
|
|
|
|
|
|
| CounterTrace II DNA
sequencing software |
|
|
|
|
|
|
| CounterTrace II DNA
sequencing system |
|
|
|
|
|
|
| DOGS:
Database of Genome Sizes |
|
|
|
|
|
|
|
| GAIA 22 |
|
|
|
|
|
|
|
|
|
| GeneOrder |
|
|
|
|
|
|
|
|
| GeneStudio LE |
|
|
|
|
|
|
|
|
| GenomatixSuitePE |
|
|
|
|
|
|
|
|
| Glimmer |
|
|
|
|
|
|
|
|
|
| HelixTree Genetics
Analysis Software |
|
|
|
|
|
|
| KoriBlast |
|
|
|
|
|
|
|
|
|
| Large scale
DNA wavelet transformation tool |
|
|
|
|
|
|
| MatInspector |
|
|
|
|
|
|
|
|
| MedScan |
|
|
|
|
|
|
|
|
|
| New
Finishing Protocols |
|
|
|
|
|
|
|
| ORFer |
|
|
|
|
|
|
|
|
|
| PathwayAssist |
|
|
|
|
|
|
|
|
| PrimerPlex |
|
|
|
|
|
|
|
|
| Purine/Keto/Coding
Genome Plots |
|
|
|
|
|
|
| QualTrace |
|
|
|
|
|
|
|
|
|
| ResNet |
|
|
|
|
|
|
|
|
|
| SGD: Saccharomyces Genome
Database |
|
|
|
|
|
|
| STEM: Short
Time-series Expression Miner |
|
|
|
|
|
|
| Simulis
Conversions |
|
|
|
|
|
|
|
|
| Species-specific Protein Sequence Searches |
|
|
|
|
|
|
| TAIR: The Arabidopsis
Information Resource |
|
|
|
|
|
|
| ViaGene |
|
|
|
|
|
|
|
|
|
| Wustl Genome Center Sequencing Manual |
|
|
|
|
|
|
| Xpression Primer |
|
|
|
|
|
|
|
|
| bioWidgets |
|
|
|
|
|
|
|
|
| pathway studio |
|
|
|
|
|
|
|
|
| resnet |
|
|
|
|
|
|
|
|
|
|
|
| Genetics |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| FASTA to multi-FASTA converter |
|
|
|
|
|
|
|
| Multi-FASTA
to FASTA converter |
|
|
|
|
|
|
|
| 2DMAP |
|
|
|
|
|
|
|
|
|
| ALLASS |
|
|
|
|
|
|
|
|
|
| ALP |
|
|
|
|
|
|
|
|
|
| ANCML |
|
|
|
|
|
|
|
|
|
| ARLEQUIN |
|
|
|
|
|
|
|
|
|
| Aligner |
|
|
|
|
|
|
|
|
|
| Array Designer |
|
|
|
|
|
|
|
|
| BETA |
|
|
|
|
|
|
|
|
|
| BOREL |
|
|
|
|
|
|
|
|
|
| BibioSphere PathwayEdition |
|
|
|
|
|
|
|
| CEPH2MAP |
|
|
|
|
|
|
|
|
| CLC Bioinformatics Cell |
|
|
|
|
|
|
|
| CLC Combined
Workbench |
|
|
|
|
|
|
|
| CLC Gene
Workbench |
|
|
|
|
|
|
|
|
| CLC RNA
Workbench |
|
|
|
|
|
|
|
|
| COMDS |
|
|
|
|
|
|
|
|
|
| COPE |
|
|
|
|
|
|
|
|
|
| CEE |
|
|
|
|
|
|
|
|
|
| CodonCode Aligner
Sequence Assembler |
|
|
|
|
|
|
| Complementor |
|
|
|
|
|
|
|
|
| ConvAn |
|
|
|
|
|
|
|
|
|
| CounterTrace II DNA
sequencing software |
|
|
|
|
|
|
| Cutter |
|
|
|
|
|
|
|
|
|
| ElDorado/Gene2Promoter |
|
|
|
|
|
|
|
| FAST-MAP |
|
|
|
|
|
|
|
|
|
| Fast chromatogram viewer |
|
|
|
|
|
|
|
| Foreign
Gene Expression in Yeast |
|
|
|
|
|
|
|
| GAS |
|
|
|
|
|
|
|
|
|
| GASP |
|
|
|
|
|
|
|
|
|
| GConvert |
|
|
|
|
|
|
|
|
|
| GRONLOD |
|
|
|
|
|
|
|
|
|
| Genchek |
|
|
|
|
|
|
|
|
|
| Geneious |
|
|
|
|
|
|
|
|
|
| Genetics
& Mapping |
|
|
|
|
|
|
|
|
| GenomatixSuitePE |
|
|
|
|
|
|
|
|
| Genowiz |
|
|
|
|
|
|
|
|
|
| Gensearch |
|
|
|
|
|
|
|
|
|
| Grid cell counter |
|
|
|
|
|
|
|
|
| HAL |
|
|
|
|
|
|
|
|
|
| HOMOG/HOMOGM |
|
|
|
|
|
|
|
|
| HelixTree Genetics
Analysis Software |
|
|
|
|
|
|
| LDB/LDB+ |
|
|
|
|
|
|
|
|
|
| LINKAGE |
|
|
|
|
|
|
|
|
|
| LIPED |
|
|
|
|
|
|
|
|
|
| LabCollector |
|
|
|
|
|
|
|
|
| MAP/MAP+/MAP+H |
|
|
|
|
|
|
|
|
| MB DNA Analysis |
|
|
|
|
|
|
|
|
| MatInspector |
|
|
|
|
|
|
|
|
| Molecular
Genetics of a Virus |
|
|
|
|
|
|
|
| NOPAR |
|
|
|
|
|
|
|
|
|
| NetPlasmid |
|
|
|
|
|
|
|
|
| NetPrimer |
|
|
|
|
|
|
|
|
|
| ORF Viewer |
|
|
|
|
|
|
|
|
| POINTER |
|
|
|
|
|
|
|
|
|
| Primer3 by JustBio |
|
|
|
|
|
|
|
|
| PrimerPlex |
|
|
|
|
|
|
|
|
| QTL
Cartographer |
|
|
|
|
|
|
|
|
| RHMAPPER |
|
|
|
|
|
|
|
|
| RNA Baser - rRNA
sequence assembly and analysis |
|
|
|
|
|
| Regulatory
Sequence Analyzer |
|
|
|
|
|
|
|
| ResNet |
|
|
|
|
|
|
|
|
|
| SIB-PAIR |
|
|
|
|
|
|
|
|
|
| SLINK |
|
|
|
|
|
|
|
|
|
| STEM |
|
|
|
|
|
|
|
|
|
| SeqExpress |
|
|
|
|
|
|
|
|
| SimLife
Scenarios: A Population Genetics Simulation |
|
|
|
|
|
| TLINKAGE |
|
|
|
|
|
|
|
|
|
| TYPENEXT |
|
|
|
|
|
|
|
|
|
| The Lac
Operon |
|
|
|
|
|
|
|
|
| VARYPHEN |
|
|
|
|
|
|
|
|
|
| VITESSE |
|
|
|
|
|
|
|
|
|
| VORTEX |
|
|
|
|
|
|
|
|
|
| WEB-PREPLINK |
|
|
|
|
|
|
|
|
| pDRAW32 |
|
|
|
|
|
|
|
|
|
| resnet |
|
|
|
|
|
|
|
|
|
| tgge-star |
|
|
|
|
|
|
|
|
|
|
|
| DNA
Sequence Analysis |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| FASTA to multi-FASTA converter |
|
|
|
|
|
|
|
| Multi-FASTA
to FASTA converter |
|
|
|
|
|
|
|
| ABI to FASTA free converter |
|
|
|
|
|
|
|
| AiO |
|
|
|
|
|
|
|
|
|
| Aligner |
|
|
|
|
|
|
|
|
|
| AlleleID 4 |
|
|
|
|
|
|
|
|
|
| Artemis |
|
|
|
|
|
|
|
|
|
| BLASTView |
|
|
|
|
|
|
|
|
| Beacon Designer |
|
|
|
|
|
|
|
|
| CLC Combined
Workbench |
|
|
|
|
|
|
|
| CONFAC |
|
|
|
|
|
|
|
|
|
| Cleaner |
|
|
|
|
|
|
|
|
|
| CodonCode Aligner
Sequence Assembler |
|
|
|
|
|
|
| Complementor |
|
|
|
|
|
|
|
|
| CounterTrace II DNA
sequencing system |
|
|
|
|
|
|
| CpG
Islands |
|
|
|
|
|
|
|
|
| Cutter |
|
|
|
|
|
|
|
|
|
| DIG |
|
|
|
|
|
|
|
|
|
| DNA Baser |
|
|
|
|
|
|
|
|
|
| GeneStudio LE |
|
|
|
|
|
|
|
|
| Gensearch |
|
|
|
|
|
|
|
|
|
| JaMBW 1.1 |
|
|
|
|
|
|
|
|
| KoriBlast |
|
|
|
|
|
|
|
|
|
| Mutability |
|
|
|
|
|
|
|
|
|
| Parasite Databases
of Clustered ESTs |
|
|
|
|
|
|
| Primer3 |
|
|
|
|
|
|
|
|
|
| PrimerPlex |
|
|
|
|
|
|
|
|
| QualTrace |
|
|
|
|
|
|
|
|
|
| RNA Base |
|
|
|
|
|
|
|
|
|
| RepeatFinder |
|
|
|
|
|
|
|
|
| SAMBA |
|
|
|
|
|
|
|
|
|
| SEQtools |
|
|
|
|
|
|
|
|
|
| SGD |
|
|
|
|
|
|
|
|
|
| Sequence Analysis for Mac
OS X |
|
|
|
|
|
|
|
| Serial
Cloner |
|
|
|
|
|
|
|
|
| TESS |
|
|
|
|
|
|
|
|
|
| SimVector 2 |
|
|
|
|
|
|
|
|
| Translate |
|
|
|
|
|
|
|
|
|
| Translator |
|
|
|
|
|
|
|
|
|
| Wise2 |
|
|
|
|
|
|
|
|
|
| XYLEM |
|
|
|
|
|
|
|
|
|
| bioWidgets |
|
|
|
|
|
|
|
|
| createGel |
|
|
|
|
|
|
|
|
|
| XYLEM |
|
|
|
|
|
|
|
|
|
| bioWidgets |
|
|
|
|
|
|
|
|
| pDRAW32 |
|
|
|
|
|
|
|
|
|
| yass |
|
|
|
|
|
|
|
|
|
|
| Institute
for Systems Biology |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Addama |
|
|
|
|
|
|
|
|
|
| ASAPRatio |
|
|
|
|
|
|
|
|
|
| ATAQS |
|
|
|
|
|
|
|
|
|
| Biosap |
|
|
|
|
|
|
|
|
|
| BioTapestry |
|
|
|
|
|
|
|
|
| Corra |
|
|
|
|
|
|
|
|
|
| Cytoscape |
|
|
|
|
|
|
|
|
|
| DNA
Microarray Data Processing |
|
|
|
|
|
|
|
| DoDoMa |
|
|
|
|
|
|
|
|
|
| EPEPT |
|
|
|
|
|
|
|
|
|
| Fastbreak |
|
|
|
|
|
|
|
|
|
| Gaggle |
|
|
|
|
|
|
|
|
|
| Golem |
|
|
|
|
|
|
|
|
|
| Haplotype
Analysis |
|
|
|
|
|
|
|
|
| Host-Pathogen
Network Portal |
|
|
|
|
|
|
|
| Inheritance
State Block Analysis |
|
|
|
|
|
|
|
| iProphet |
|
|
|
|
|
|
|
|
|
| Kaviar |
|
|
|
|
|
|
|
|
|
| Libra |
|
|
|
|
|
|
|
|
|
| MAGMA |
|
|
|
|
|
|
|
|
|
| miRvestigator
Framework |
|
|
|
|
|
|
|
| mspecLINE |
|
|
|
|
|
|
|
|
| PASSEL |
|
|
|
|
|
|
|
|
|
| PeptideAtlas |
|
|
|
|
|
|
|
|
| PeptideProphet |
|
|
|
|
|
|
|
|
| PeptideSieve |
|
|
|
|
|
|
|
|
| PhosphoPep |
|
|
|
|
|
|
|
|
| PIPE2 |
|
|
|
|
|
|
|
|
|
| ProbTF |
|
|
|
|
|
|
|
|
|
| ProteinProphet |
|
|
|
|
|
|
|
|
| Proteomics
Toolkit |
|
|
|
|
|
|
|
|
| Pubcrawl |
|
|
|
|
|
|
|
|
|
| RF-ACE |
|
|
|
|
|
|
|
|
|
| SBEAMS |
|
|
|
|
|
|
|
|
|
| SpectraST |
|
|
|
|
|
|
|
|
|
| SRMAtlas |
|
|
|
|
|
|
|
|
|
| The GESTALT
Workbench |
|
|
|
|
|
|
|
| Trans-Proteomic Pipeline |
|
|
|
|
|
|
|
| UniPep |
|
|
|
|
|
|
|
|
|
| VERA
and SAM |
|
|
|
|
|
|
|
|
| VisQuick |
|
|
|
|
|
|
|
|
|
| Bioinformatics Resources |
|
|
|
|
|
|
|
|
| Proteomics
databases available on the internet. |
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| RPD |
|
|
|
|
|
|
|
|
|
| ANPD |
|
|
|
|
|
|
|
|
|
| AMPD |
|
|
|
|
|
|
|
|
|
| PA-GOSUB |
|
|
|
|
|
|
|
|
| Swiss-Prot |
|
|
|
|
|
|
|
|
| AAindex |
|
|
|
|
|
|
|
|
|
| Prosite |
|
|
|
|
|
|
|
|
|
| PLANT-Pis |
|
|
|
|
|
|
|
|
|
| GeneFarm |
|
|
|
|
|
|
|
|
|
|
|
| Web
pages from where plant microarray data were downloaded. |
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Affymetrix AG |
|
|
|
|
|
|
|
|
| Affymetrix ATH1 |
|
|
|
|
|
|
|
|
| Operon |
|
|
|
|
|
|
|
|
|
| CATMA |
|
|
|
|
|
|
|
|
|
| AFGC |
|
|
|
|
|
|
|
|
|
| Agilent |
|
|
|
|
|
|
|
|
|
| Affymetrix Poplar Genome Array |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Database
tools. |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Arraytrack |
|
|
|
|
|
|
|
|
|
| Acuity |
|
|
|
|
|
|
|
|
|
| Array Results
Manager ARM |
|
|
|
|
|
|
|
| BASE 2 |
|
|
|
|
|
|
|
|
|
| caArray |
|
|
|
|
|
|
|
|
|
| Expressionist |
|
|
|
|
|
|
|
|
| Gene Array
Analyzer Software GAAS |
|
|
|
|
|
|
| GeneSpring Workgroup |
|
|
|
|
|
|
|
| GeneTraffic |
|
|
|
|
|
|
|
|
| Genowiz |
|
|
|
|
|
|
|
|
|
| Longhorn Array
Database LAD |
|
|
|
|
|
|
|
| PARTISAN arrayLIMS |
|
|
|
|
|
|
|
|
| Rosetta Resolver System |
|
|
|
|
|
|
|
| Stanford
Microarray Database SMD |
|
|
|
|
|
|
| GeneDirector |
|
|
|
|
|
|
|
|
| MaxdLoad2 |
|
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|
|
|
|
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|
|
| Other
useful statistical analysis and data-mining tools. |
|
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| |
|
|
|
|
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|
|
|
| Amiada |
|
|
|
|
|
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|
|
| ArrayAssist Enterprise |
|
|
|
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|
|
|
|
| caGEDA |
|
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| Cluster |
|
|
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|
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| dChip |
|
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|
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|
|
| GeneMaths
XT |
|
|
|
|
|
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|
|
| INCLUSive |
|
|
|
|
|
|
|
|
|
| J-Express Pro |
|
|
|
|
|
|
|
|
| MAExplorer |
|
|
|
|
|
|
|
|
| NIA Array
analysis |
|
|
|
|
|
|
|
|
| Onto-Tools |
|
|
|
|
|
|
|
|
| Probe
Profiler |
|
|
|
|
|
|
|
|
| TableView |
|
|
|
|
|
|
|
|
|
| Venn
Mappe |
|
|
|
|
|
|
|
|
|
| Gene
Expression Analysis & Genotyping Categories |
|
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|
| |
|
|
|
|
|
|
|
|
|
| Genotyping & Genomic Profiling |
|
|
|
|
|
|
|
| SNP Genotyping: Real-Time PCR-Based / Fragment
Analysis-Based |
|
|
|
|
| Copy Number Variation |
|
|
|
|
|
|
|
| Array CGH |
|
|
|
|
|
|
|
|
|
| AFLP, RFLP, SSCP & BAC Analysis |
|
|
|
|
|
|
|
|
| High Resolution Melting (HRM) Analysis |
|
|
|
|
|
|
| Drug Metabolizing Enzyme (DME) Genotyping |
|
|
|
|
|
|
| TaqMan¨ Mutation Detection Assays |
|
|
|
|
|
|
|
| KRAS & BRAF Mutation Analysis |
|
|
|
|
|
|
|
|
| Microsatellite Analysis |
|
|
|
|
|
|
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|
|
| In Situ Hybridization (ISH) |
|
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|
|
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|
|
| Human Identification |
|
|
|
|
|
|
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|
|
| MetaCoreª |
|
|
|
|
|
|
|
|
|
| Nexus
Expressionª |
|
|
|
|
|
|
|
|
|
| Gene
Expression Analysis Using Real-Time PCR |
|
|
|
|
|
|
| Real-Time
PCR |
|
|
|
|
|
|
|
|
|
| Quantitation
of gene products |
|
|
|
|
|
|
|
|
| Microarray
validation |
|
|
|
|
|
|
|
|
|
| Pathway
analysis |
|
|
|
|
|
|
|
|
|
| Developmental
biology |
|
|
|
|
|
|
|
|
| Quality
control and assay validation |
|
|
|
|
|
|
|
| siRNA/RNAi
experiments |
|
|
|
|
|
|
|
|
| Low-fold
copy number discrimination |
|
|
|
|
|
|
|
| Mid-to
high-throughput profiling using the OpenArray¨ platform |
|
|
|
|
|
| Digital
PCR |
|
|
|
|
|
|
|
|
|
| Absolute
quantification of nucleic acid standards & next-generation sequencing
libraries |
|
|
| Rare
target detection |
|
|
|
|
|
|
|
|
| Enrichment
and separation of mixtures |
|
|
|
|
|
|
| microRNA
& Noncoding RNA Analysis Using Real-Time PCR |
|
|
|
|
| miRNA Profiling |
|
|
|
|
|
|
|
|
| miRNA Quantitation |
|
|
|
|
|
|
|
|
| miRNA Functional Analysis |
|
|
|
|
|
|
|
| Pri-miRNA Analysis Using Real-Time PCR |
|
|
|
|
|
|
| Long noncoding RNA (ncRNA) Analysis Using Real-Time PCR |
|
|
|
|
| Small RNA Analysis |
|
|
|
|
|
|
|
|
| Genetic
Variation Analysis Using Real-Time PCR |
|
|
|
|
|
| SNP Genotyping With Real-Time PCR |
|
|
|
|
|
|
| SNP Genotyping Using the QuantStudioª 12K Flex Real-Time PCR
System with OpenArray¨ block |
|
| Drug Metabolism Enzymes (DME) Profiling with Real-Time PCR |
|
|
|
|
| Copy Number Variation (CNV) with Real-Time PCR |
|
|
|
|
|
| High Resolution Melting (HRM) |
|
|
|
|
|
|
|
| Digital
PCR |
|
|
|
|
|
|
|
|
| Viral Load Quantification by Digital PCR |
|
|
|
|
|
|
| Single Cell Transcript Quantification by Digital PCR |
|
|
|
|
|
| Protein
Analysis Using Real-Time PCR |
|
|
|
|
|
|
| Protein Expression Analysis Using Real-Time PCR |
|
|
|
|
|
| Protein Thermal Shift |
|
|
|
|
|
|
|
|
| Mutation Detection With Real-Time PCR |
|
|
|
|
|
|
|
| Real-Time
PCR Data Analysis |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Gene
Expression Analysis |
|
|
|
|
|
|
|
| RealTime StatMiner¨ |
|
|
|
|
|
|
|
|
| DataAssistª |
|
|
|
|
|
|
|
|
| Genotyping
Analysis |
|
|
|
|
|
|
|
|
| Human SNPbrowserª |
|
|
|
|
|
|
|
|
| Mouse SNPbrowserª |
|
|
|
|
|
|
|
|
| TaqMan¨ |
|
|
|
|
|
|
|
|
|
| CopyCallerª |
|
|
|
|
|
|
|
|
| High Resolution Melt (HRM) Software v3.0 |
|
|
|
|
|
|
| High Resolution Melt (HRM) Software v2.0 |
|
|
|
|
|
|
| TaqMan¨ Mutation Detection Software |
|
|
|
|
|
|
| Digital
PCR Analysis |
|
|
|
|
|
|
|
|
| OpenArray¨ Digital PCR Software |
|
|
|
|
|
|
|
| Real-Time
PCR Primer and Probe Design |
|
|
|
|
|
|
| Primer Express¨ |
|
|
|
|
|
|
|
|
| TaqMan¨
Protein Assay Analysis |
|
|
|
|
|
|
|
| ProteinAssistª |
|
|
|
|
|
|
|
|
| Protein Thermal Shiftª |
|
|
|
|
|
|
|
| Laser Capture Microdissection |
|
|
|
|
|
|
|
| Microarray Analysis |
|
|
|
|
|
|
|
|
| RNAi |
|
|
|
|
|
|
|
|
|
| miRNA Analysis |
|
|
|
|
|
|
|
|
| siRNA |
|
|
|
|
|
|
|
|
|
| Vector-Based RNAi |
|
|
|
|
|
|
|
|
| In Vivo siRNA Analysis |
|
|
|
|
|
|
|
|
| RNAi Transfection |
|
|
|
|
|
|
|
|
| Non-Coding RNA |
|
|
|
|
|
|
|
|
|
| Sequencing |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Sequencing
Applications |
|
|
|
|
|
|
|
| Genome & DNA Sequence Analysis |
|
|
|
|
|
|
| RNA &
Transcriptome Sequencing |
|
|
|
|
|
|
|
| Epigenetic Sequencing |
|
|
|
|
|
|
|
| Sequencing
Instrument Platforms |
|
|
|
|
|
|
|
| Semiconductor Sequencing |
|
|
|
|
|
|
|
| Next-Generation Sequencing |
|
|
|
|
|
|
|
| Capillary Electrophoresis Sequencing & Fragment Analysis |
|
|
|
|
|
|
| Agricultural
Biotechnology |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Plant de novo Genome Sequencing |
|
|
|
|
|
|
| Plant Gene Expression Analysis |
|
|
|
|
|
|
|
| Plant Genotyping |
|
|
|
|
|
|
|
|
| Plant Genetic Engineering |
|
|
|
|
|
|
|
| QTL Mapping and Marker-Assisted Selection |
|
|
|
|
|
|
| GMO Testing & Detection |
|
|
|
|
|
|
|
| Products for Plant Science Research |
|
|
|
|
|
|
| Plant DNA & RNA Isolation |
|
|
|
|
|
|
|
| Plant Cell & Tissue Analysis |
|
|
|
|
|
|
|
| Plant Genotyping & Copy Number Analysis |
|
|
|
|
|
|
|
| BioSoft |
Biomedical Range |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| QuantiScan |
|
|
|
|
|
|
|
|
| Calcusyn |
|
|
|
|
|
|
|
|
|
| EnzFitter |
|
|
|
|
|
|
|
|
|
| AssayZap |
|
|
|
|
|
|
|
|
|
|
| Sanger
Sequencing |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Sequence Editing |
|
|
|
|
|
|
|
|
| Sequence Trimming |
|
|
|
|
|
|
|
|
| Sequence Assembly |
|
|
|
|
|
|
|
|
| Confidence Values |
|
|
|
|
|
|
|
|
| SNP
Detection |
|
|
|
|
|
|
|
|
| Automated Analysis |
|
|
|
|
|
|
|
|
|
| General
Analysis |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Reference Alignment |
|
|
|
|
|
|
|
|
| Variance Table |
|
|
|
|
|
|
|
|
| Translated Variance Table |
|
|
|
|
|
|
|
| Restriction Mapping |
|
|
|
|
|
|
|
|
| Clustal |
|
|
|
|
|
|
|
|
|
|
| NGS |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Maq |
|
|
|
|
|
|
|
|
|
| GSNAP |
|
|
|
|
|
|
|
|
|
| SNP Analysis |
|
|
|
|
|
|
|
|
| Methylation Studies |
|
|
|
|
|
|
|
|
| Viewers |
|
|
|
|
|
|
|
|
|
|
| Protein
Bioinformatics |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| ProMab Custom Antibody |
|
|
|
|
|
|
|
| SUV39H1 Recomb. Protein |
|
|
|
|
|
|
|
| Make fluorescent-fusion |
|
|
|
|
|
|
|
| microRNA 3' UTR Targets |
|
|
|
|
|
|
|
| Gene
Expression Analysis |
|
|
|
|
|
|
|
|
| Bioinformatics
Group |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| BioRAT |
|
|
|
|
|
|
|
|
|
| CRC64 |
|
|
|
|
|
|
|
|
|
| DISOPRED |
|
|
|
|
|
|
|
|
|
| GPGPUFRAGFOLD |
|
|
|
|
|
|
|
|
| JYDE2 |
|
|
|
|
|
|
|
|
|
| MEMSAT3 |
|
|
|
|
|
|
|
|
|
| MEMSATSVM |
|
|
|
|
|
|
|
|
| MEMPACK |
|
|
|
|
|
|
|
|
|
| pfilt |
|
|
|
|
|
|
|
|
|
| pGenTHREADER |
|
|
|
|
|
|
|
|
| PSIPRED |
|
|
|
|
|
|
|
|
|
| THREADER |
|
|
|
|
|
|
|
|
|
| PSICOV |
|
|
|
|
|
|
|
|
|
|
|
| Lasergene
Genomics Suite |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| SeqMan NGen |
|
|
|
|
|
|
|
|
| ArrayStar |
|
|
|
|
|
|
|
|
|
| QSeq |
|
|
|
|
|
|
|
|
|
| DNASTAR Navigator |
|
|
|
|
|
|
|
|
| Lasergene
Core Suite |
|
|
|
|
|
|
|
|
| Genome
Assembly |
|
|
|
|
|
|
|
|
|
| Lasergene
Core Suite |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| SeqBuilder |
|
|
|
|
|
|
|
|
| SeqMan Pro |
|
|
|
|
|
|
|
|
| MegAlign |
|
|
|
|
|
|
|
|
|
| GeneQuest |
|
|
|
|
|
|
|
|
| Protean 3D |
|
|
|
|
|
|
|
|
| Protean |
|
|
|
|
|
|
|
|
|
| SeqNinja |
|
|
|
|
|
|
|
|
|
| GenVision |
|
|
|
|
|
|
|
|
|
| PrimerSelect |
|
|
|
|
|
|
|
|
| EditSeq |
|
|
|
|
|
|
|
|
|
|
| Sequence
Analysis Solutions |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Virtual Cloning |
|
|
|
|
|
|
|
|
| Sequence Alignment |
|
|
|
|
|
|
|
|
| Gene Discovery |
|
|
|
|
|
|
|
|
|
| Next-Gen
Solutions |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Reference-Guided Genome Assembly |
|
|
|
|
|
|
| De novo Genome Assembly |
|
|
|
|
|
|
|
| De Novo Transcriptome Assembly |
|
|
|
|
|
|
|
| Large-Scale, Multi-Sample SNP Analysis |
|
|
|
|
|
|
| Exome Assembly |
|
|
|
|
|
|
|
|
|
| Gene
Expression Solutions |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Identification of Gene Expression Patterns |
|
|
|
|
|
|
| Identification of Groups of Co-regulated Genes |
|
|
|
|
|
| Gene Ontology Association Analysis |
|
|
|
|
|
|
|
| Next-Generation
and Third-Generation Sequencing |
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Sequencing
technologies |
|
|
|
|
|
|
|
| Ion Torrent, |
|
|
|
|
|
|
|
|
| Illumina, |
|
|
|
|
|
|
|
|
|
| Pacific
Biosciences |
|
|
|
|
|
|
|
|
| Roche 454 |
|
|
|
|
|
|
|
|
|
| SOLiD |
|
|
|
|
|
|
|
|
|
| SeqMan
NGen |
|
|
|
|
|
|
|
|
| Mauve |
|
|
|
|
|
|
|
|
|
|
| 454
& Ion Torrent Data Analysis |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| TimeLogic¨ |
|
|
|
|
|
|
|
|
| Tera-BLASTNª, |
|
|
|
|
|
|
|
|
| GeneDetectiveª |
|
|
|
|
|
|
|
|
| Symmetric Frame
Independentª |
|
|
|
|
|
|
|
| DeCypherHMMª |
|
|
|
|
|
|
|
|
| DeCypherSWª |
|
|
|
|
|
|
|
|
| PipeWorks |
|
|
|
|
|
|
|
|
| CodeQuest¨ |
|
|
|
|
|
|
|
|
|
|
| Next
Generation Sequencing |
|
|
|
|
|
|
|
| Partek¨ |
|
|
|
|
|
|
|
|
|
| Genomics Suiteª |
|
|
|
|
|
|
|
|
| Flow¨ |
|
|
|
|
|
|
|
|
|
| Pathway |
|
|
|
|
|
|
|
|
|
| Express |
|
|
|
|
|
|
|
|
|
| discovery Suite |
|
|
|
|
|
|
|
|
| Screening solution |
|
|
|
|
|
|
|
|
| QSAR Solution |
|
|
|
|
|
|
|
|
|
| Genomics |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| AlleleID¨ 7.73 |
|
|
|
|
|
|
|
|
| Array
Designer 4.30 |
|
|
|
|
|
|
|
|
| Beacon Designerª 8.00 |
|
|
|
|
|
|
|
| LAMP
Designerª 1.02 |
|
|
|
|
|
|
|
|
| PrimerPlex
2.61 |
|
|
|
|
|
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|
|
| Primer
Premier 6.11 |
|
|
|
|
|
|
|
|
| SimVector
4.60 |
|
|
|
|
|
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|
|
| Xpression
Primer 3.03 |
|
|
|
|
|
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|
|
| High Content Screening |
|
|
|
|
|
|
|
| CellSee 1.00 |
|
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|
|
|
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|
|
| TMA Foresight 3.01 |
|
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|
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| 454
& Ion Torrent Data Analysis |
|
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| |
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|
|
| TimeLogic¨ |
|
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|
|
| Tera-BLASTNª, |
|
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|
| GeneDetectiveª |
|
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|
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|
|
| Symmetric Frame
Independentª |
|
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|
|
| DeCypherHMMª |
|
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|
| DeCypherSWª |
|
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| PipeWorks |
|
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|
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|
|
| CodeQuest¨ |
|
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|
|
| PlantGDB
Tools |
|
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| |
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|
|
| MuSeqBox |
|
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| PatternSearch |
|
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|
| yrGATE |
|
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|
| ProbeMatch |
|
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|
|
| BioExtractServer |
|
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|
|
| FindPrimers |
|
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|
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|
|
| GeneSeqer |
|
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|
|
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|
|
| GenomeThreader |
|
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|
|
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|
|
| BLAST |
|
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|
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|
| DAS |
|
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|
|
| TE_Nest |
|
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|
| TracEmbler |
|
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|
| Animal
Genomics Software Repository |
|
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| |
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|
|
| BEAP |
|
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| BEAP_Parser |
|
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| COB |
|
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|
| DNAgcCal |
|
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|
|
| IntelQTL |
|
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|
| SNPidentifier |
|
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| crimap |
|
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|
| otterlace |
|
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|
|
| NAGRP Toolbox |
|
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|
| Sequence
Analysis Software |
|
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|
| |
|
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|
|
| Base
calling, viewing |
|
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|
|
| Phred / Phrap / Consed |
|
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|
|
| SNP
Analysis |
|
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|
| Consed |
|
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|
| DnaSP |
|
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| PolyPhred |
|
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|
| SNPidentifier |
|
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|
|
| SNP PHAGE |
|
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|
|
| SNPdetector |
|
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|
| Alignment
/ Clustering |
|
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|
| Arachne |
|
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|
| Assembler |
|
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|
| CAP3 |
|
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|
|
| ClustralW |
|
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|
|
| ContigViewer |
|
|
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|
|
| ePCR |
|
|
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|
|
| mePCR |
|
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|
|
| MultiAlin |
|
|
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|
|
| PaCE |
|
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|
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|
|
| PCAP |
|
|
|
|
|
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|
|
| Splign |
|
|
|
|
|
|
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|
|
| Alignment
Graphic Drawing |
|
|
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|
|
| SSAHA |
|
|
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|
|
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|
|
| MAQ |
|
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|
|
| Bowtie |
|
|
|
|
|
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|
|
| Mosaic |
|
|
|
|
|
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|
|
| Check
low complexity |
|
|
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|
|
| RepeatMasker |
|
|
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|
|
| Repeatfinder |
|
|
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|
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|
|
| RNAi
searches |
|
|
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|
|
| miRanda |
|
|
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|
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|
|
| MiRFinder |
|
|
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|
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|
|
| others |
|
|
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|
|
| Similarity
Search |
|
|
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|
|
| Blast |
|
|
|
|
|
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|
|
| Blastz |
|
|
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|
|
| Fasta |
|
|
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|
|
| GMAP |
|
|
|
|
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|
| Mulan |
|
|
|
|
|
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|
|
| SynView |
|
|
|
|
|
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|
|
| SynBrowse |
|
|
|
|
|
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|
|
| ECR Browser |
|
|
|
|
|
|
|
|
| Others |
|
|
|
|
|
|
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|
|
| Primer
design |
|
|
|
|
|
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|
|
| Amplify |
|
|
|
|
|
|
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|
|
| CodeHOP |
|
|
|
|
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|
|
| Expeditor |
|
|
|
|
|
|
|
|
|
| OligoSpawn |
|
|
|
|
|
|
|
|
| FastPCR |
|
|
|
|
|
|
|
|
|
| Primer3 |
|
|
|
|
|
|
|
|
|
| Primer
Premier 5 |
|
|
|
|
|
|
|
|
| Prim2 |
|
|
|
|
|
|
|
|
|
| Next
Gen Seq Analysis: |
|
|
|
|
|
|
|
| A list of next-gen-seq software |
|
|
|
|
|
|
|
| Genome
Analysis |
|
|
|
|
|
|
|
|
| Light weighted genome
viewer |
|
|
|
|
|
|
|
| Vmatch |
|
|
|
|
|
|
|
|
|
| Misc |
|
|
|
|
|
|
|
|
|
| Reverse
complement convertor |
|
|
|
|
|
|
|
| KegDraw |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Genetics
Analysis Software |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Linkage
analysis |
|
|
|
|
|
|
|
|
| CarthaGene |
|
|
|
|
|
|
|
|
| Cri-Map |
|
|
|
|
|
|
|
|
|
| JoinMap |
|
|
|
|
|
|
|
|
|
| LocusMap |
|
|
|
|
|
|
|
|
|
| Mapmaker |
|
|
|
|
|
|
|
|
|
| NCBI
CONCORDE |
|
|
|
|
|
|
|
|
| RHMapper |
|
|
|
|
|
|
|
|
|
| Sibs |
|
|
|
|
|
|
|
|
|
| SCAT |
|
|
|
|
|
|
|
|
|
| HOTSPOTTER |
|
|
|
|
|
|
|
|
| Haplotype
analysis |
|
|
|
|
|
|
|
|
| fastPHASE |
|
|
|
|
|
|
|
|
|
| PHASE |
|
|
|
|
|
|
|
|
|
| Genetics
analysis |
|
|
|
|
|
|
|
|
| epiSNP |
|
|
|
|
|
|
|
|
|
| EPISNPmpi |
|
|
|
|
|
|
|
|
| MiNiInbred |
|
|
|
|
|
|
|
|
| QTL
analysis |
|
|
|
|
|
|
|
|
| BmapQTL |
|
|
|
|
|
|
|
|
|
| MapQTL |
|
|
|
|
|
|
|
|
|
| QTL
Cartographer |
|
|
|
|
|
|
|
|
| QTL Express |
|
|
|
|
|
|
|
|
| QTLBIM |
|
|
|
|
|
|
|
|
|
| Qxpak |
|
|
|
|
|
|
|
|
|
| PlabQTL |
|
|
|
|
|
|
|
|
|
| SPSSQTL |
|
|
|
|
|
|
|
|
|
| WebQTL |
|
|
|
|
|
|
|
|
|
| Phylogeny
analysis |
|
|
|
|
|
|
|
|
| Phylip |
|
|
|
|
|
|
|
|
|
| PAUP |
|
|
|
|
|
|
|
|
|
| PhyML |
|
|
|
|
|
|
|
|
|
| TimeTree |
|
|
|
|
|
|
|
|
|
| Eshadow |
|
|
|
|
|
|
|
|
|
| Pedigree |
|
|
|
|
|
|
|
|
|
| Pedigraph |
|
|
|
|
|
|
|
|
|
| Pedigree-Draw |
|
|
|
|
|
|
|
|
| MiniInbred |
|
|
|
|
|
|
|
|
| MORGAN |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Functional
Genomics Software |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Domain/Motif
Prediction |
|
|
|
|
|
|
|
| EST
Scan |
|
|
|
|
|
|
|
|
|
| ORF Finder |
|
|
|
|
|
|
|
|
| ORF Predictor |
|
|
|
|
|
|
|
|
| Genome Scan |
|
|
|
|
|
|
|
|
| Pfam |
|
|
|
|
|
|
|
|
|
| PRINTS |
|
|
|
|
|
|
|
|
|
| PROSITE |
|
|
|
|
|
|
|
|
|
| Splice
Predictor |
|
|
|
|
|
|
|
|
| Gene
Prediction |
|
|
|
|
|
|
|
|
| Augusrus |
|
|
|
|
|
|
|
|
|
| HMMgene |
|
|
|
|
|
|
|
|
|
| GENEscan |
|
|
|
|
|
|
|
|
|
| Grail |
|
|
|
|
|
|
|
|
|
| GLEAN |
|
|
|
|
|
|
|
|
|
| Jigsaw |
|
|
|
|
|
|
|
|
|
| Microarray
Analysis |
|
|
|
|
|
|
|
|
| ArrayGenes |
|
|
|
|
|
|
|
|
| KegArray |
|
|
|
|
|
|
|
|
|
| HDB Stat |
|
|
|
|
|
|
|
|
|
| Power Atlas |
|
|
|
|
|
|
|
|
| Genome
analysis |
|
|
|
|
|
|
|
|
| GenomatiX |
|
|
|
|
|
|
|
|
| PepTool |
|
|
|
|
|
|
|
|
|
| Genewiz |
|
|
|
|
|
|
|
|
|
| Others
(GeneScan, Genie, HMMGene). |
|
|
|
|
|
|
| Gene
Annotation and Analysis |
|
|
|
|
|
|
|
| Apollo |
|
|
|
|
|
|
|
|
|
| AmiGO |
|
|
|
|
|
|
|
|
|
| ENSMART |
|
|
|
|
|
|
|
|
|
| GoSurfer |
|
|
|
|
|
|
|
|
|
| GeneHopper |
|
|
|
|
|
|
|
|
| KegHier |
|
|
|
|
|
|
|
|
|
| CateGOrizer |
|
|
|
|
|
|
|
|
| GeneLynx |
|
|
|
|
|
|
|
|
|
| MatchMiner |
|
|
|
|
|
|
|
|
| Ontology On-line |
|
|
|
|
|
|
|
|
| Otterlace |
|
|
|
|
|
|
|
|
|
| Resourcerer |
|
|
|
|
|
|
|
|
| VisuaL
Annotation Display |
|
|
|
|
|
|
|
| Expressoin
data analysis |
|
|
|
|
|
|
|
| DAVID and EASE |
|
|
|
|
|
|
|
|
| GenMAPP |
|
|
|
|
|
|
|
|
|
| Gaggle |
|
|
|
|
|
|
|
|
|
| Spotfire |
|
|
|
|
|
|
|
|
|
| TM4 |
|
|
|
|
|
|
|
|
|
| UCSC Conversation Tracks |
|
|
|
|
|
|
|
| ENCODE/ |
|
|
|
|
|
|
|
|
|
| Ensembl
Compara |
|
|
|
|
|
|
|
|
| Comparative
analysis |
|
|
|
|
|
|
|
|
| COGs |
|
|
|
|
|
|
|
|
|
| DRIMM |
|
|
|
|
|
|
|
|
|
| Ensembl
Compara |
|
|
|
|
|
|
|
|
| PEDANT 3 |
|
|
|
|
|
|
|
|
|
| KEGG |
|
|
|
|
|
|
|
|
|
| TheSEED |
|
|
|
|
|
|
|
|
|
| GenDB |
|
|
|
|
|
|
|
|
|
| PUMA2 |
|
|
|
|
|
|
|
|
|
| Comparative
Genomics Viewers |
|
|
|
|
|
|
|
| Cmap |
|
|
|
|
|
|
|
|
|
| CMap3D |
|
|
|
|
|
|
|
|
|
| Gbrowse_syn |
|
|
|
|
|
|
|
|
| Jbrowse |
|
|
|
|
|
|
|
|
|
| Genome Projector |
|
|
|
|
|
|
|
|
| Integrative
Genomics Viewer |
|
|
|
|
|
|
|
| Integrative Genome
Browser |
|
|
|
|
|
|
|
| SynBrowse |
|
|
|
|
|
|
|
|
| Strudel |
|
|
|
|
|
|
|
|
|
| VCMap |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Genetic
Networks and System Biology |
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Ontology |
|
|
|
|
|
|
|
|
|
| OBO Edit |
|
|
|
|
|
|
|
|
|
| COB Edit |
|
|
|
|
|
|
|
|
|
| Phenote |
|
|
|
|
|
|
|
|
|
| Protege Editor |
|
|
|
|
|
|
|
|
| Semantic Web |
|
|
|
|
|
|
|
|
| Trait/phenotype
analysis |
|
|
|
|
|
|
|
| TASSEL (for
Association Mapping) |
|
|
|
|
|
|
|
| Software
suites |
|
|
|
|
|
|
|
|
| SynBioSS |
|
|
|
|
|
|
|
|
|
| ToppGene Suite |
|
|
|
|
|
|
|
|
| GATACA |
|
|
|
|
|
|
|
|
|
| Galaxy |
|
|
|
|
|
|
|
|
|
| System Biology.ORG |
|
|
|
|
|
|
|
|
| System-Biology.ORG |
|
|
|
|
|
|
|
|
|
| Basic Local Alignment Search (BLAST)
at NCBI |
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Phyre |
|
|
|
|
|
|
|
|
|
| A
plasmid Editor (ApE) |
|
|
|
|
|
|
|
|
| GENtle |
|
|
|
|
|
|
|
|
|
| pDraw32 |
|
|
|
|
|
|
|
|
|
| M-Fold |
|
|
|
|
|
|
|
|
|
| FinchTV |
|
|
|
|
|
|
|
|
|
| NetPrimer |
|
|
|
|
|
|
|
|
|
| Fast PCR |
|
|
|
|
|
|
|
|
|
| Mendeley |
|
|
|
|
|
|
|
|
|
| New England
Biolabs (NEB) |
|
|
|
|
|
|
|
| Integrated DNA Technologies
(IDT) |
|
|
|
|
|
|
|
| addgene |
|
|
|
|
|
|
|
|
|
|
| PerkinElmer |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Acapella¨ |
|
|
|
|
|
|
|
|
|
| cell::explorer |
|
|
|
|
|
|
|
|
| AlphaLISA Automation |
|
|
|
|
|
|
|
| High Content Screening |
|
|
|
|
|
|
|
| RNAi Automation |
|
|
|
|
|
|
|
|
| The Columbusª |
|
|
|
|
|
|
|
|
| aCGH data analysis software |
|
|
|
|
|
|
|
| Array CGH |
|
|
|
|
|
|
|
|
|
| aCGH reagents |
|
|
|
|
|
|
|
|
| Microarrays |
|
|
|
|
|
|
|
|
|
| Luminex |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| xMAP¨ Technology |
|
|
|
|
|
|
|
|
| xTAG¨ Technology |
|
|
|
|
|
|
|
|
| MultiCode¨ Technology |
|
|
|
|
|
|
|
|
| GeneBio |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| SmileMS |
|
|
|
|
|
|
|
|
|
| Melanie |
|
|
|
|
|
|
|
|
|
| Phenyx |
|
|
|
|
|
|
|
|
|
| Swiss-Prot,
PROSITE, SWISS-2DPAGE and SwissSideChain |
|
|
|
|
|
| neXtProt |
|
|
|
|
|
|
|
|
|
|
| Strubix |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Variomeª |
|
|
|
|
|
|
|
|
|
| StructureBankª |
|
|
|
|
|
|
|
|
|
|
| Tripos |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| D360 |
|
|
|
|
|
|
|
|
|
| SYBYL-X-Suite |
|
|
|
|
|
|
|
|
| Muse |
|
|
|
|
|
|
|
|
|
| Benchware 3D Explorer |
|
|
|
|
|
|
|
| Tripos Chemistry Extensions for KNIME |
|
|
|
|
|
|
|
|
| Bioinformatics
Organization |
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| NetSurfP - Protein
Surface Accessibility and Secondary Structure Predictions |
|
|
|
| NetTurnP - Prediction
of Beta-turn regions in protein sequences |
|
|
|
|
| MODELLER - Used for
homology or comparative modeling of protein three-dimensional structures |
|
| AutoDock - Suite of
Automated Docking Tools |
|
|
|
|
|
|
| Gromacs - A molecular
dynamics package primarily designed for biomolecular systems such as proteins
and lipids |
|
| JaMBW 1.1 |
|
|
|
|
|
|
|
|
| COMBOSA3D |
|
|
|
|
|
|
|
|
| PeCop |
|
|
|
|
|
|
|
|
|
| PrimeX |
|
|
|
|
|
|
|
|
|
| Savvy |
|
|
|
|
|
|
|
|
|
| SeWeR |
|
|
|
|
|
|
|
|
|
| Sequence
Extractor |
|
|
|
|
|
|
|
|
| SMS |
|
|
|
|
|
|
|
|
|
|
|
| Format
Conversion |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Combine FASTA |
|
|
|
|
|
|
|
|
| EMBL to FASTA |
|
|
|
|
|
|
|
|
| Filter DNA |
|
|
|
|
|
|
|
|
|
| Random
Sequences |
|
|
|
|
|
|
|
|
| Random DNA Sequence |
|
|
|
|
|
|
|
| Random Protein Sequence |
|
|
|
|
|
|
|
| Sample DNA |
|
|
|
|
|
|
|
|
| Sequence
Analysis |
|
|
|
|
|
|
|
|
| Codon Usage |
|
|
|
|
|
|
|
|
| DNA Pattern Find |
|
|
|
|
|
|
|
|
| DNA Stats |
|
|
|
|
|
|
|
|
|
| Fuzzy Search DNA |
|
|
|
|
|
|
|
|
| Fuzzy Search Protein |
|
|
|
|
|
|
|
|
| Ident and Sim |
|
|
|
|
|
|
|
|
| Multi Rev Trans |
|
|
|
|
|
|
|
|
| ORF Finder |
|
|
|
|
|
|
|
|
| Pairwise Align DNA |
|
|
|
|
|
|
|
|
| Pairwise Align Protein |
|
|
|
|
|
|
|
|
| Sequence
Figures |
|
|
|
|
|
|
|
|
| Color Align Conservation |
|
|
|
|
|
|
|
| Color Align Properties |
|
|
|
|
|
|
|
|
| Group DNA |
|
|
|
|
|
|
|
|
| Group Protein |
|
|
|
|
|
|
|
|
| Primer Map |
|
|
|
|
|
|
|
|
| Restriction Map |
|
|
|
|
|
|
|
|
| Translation Map |
|
|
|
|
|
|
|
|
|
| Tools |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Bioconductor |
|
|
|
|
|
|
|
|
| BioPerl, |
|
|
|
|
|
|
|
|
|
| BioJava |
|
|
|
|
|
|
|
|
|
| BioRuby |
|
|
|
|
|
|
|
|
|
| Bioclipse |
|
|
|
|
|
|
|
|
|
| EMBOSS |
|
|
|
|
|
|
|
|
|
| Taverna
workbench |
|
|
|
|
|
|
|
|
| BioDAS |
|
|
|
|
|
|
|
|
|
| BioMOBY |
|
|
|
|
|
|
|
|
|
| BioPipe |
|
|
|
|
|
|
|
|
|
| BioPython |
|
|
|
|
|
|
|
|
|
| BioSQL |
|
|
|
|
|
|
|
|
|
| BioPHP |
|
|
|
|
|
|
|
|
|
| MycoTOOL |
|
|
|
|
|
|
|
|
| Ÿbertool |
|
|
|
|
|
|
|
|
|
| SynaBASEª |
|
|
|
|
|
|
|
|
| Molecular Biology
Tools |
|
|
|
|
|
|
|
| Rockland Anti-GFP |
|
|
|
|
|
|
|
|
| PCR Primer Design |
|
|
|
|
|
|
|
|
| Gene Expression Analysis |
|
|
|
|
|
|
|
| Large Microbial Database |
|
|
|
|
|
|
|
| Seven Bridges Genomics © |
|
|
|
|
|
|
|
|
| Apocom
Genomics |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| CERFª (Collaborative
Electronic Research Framework) |
|
|
|
|
|
| Med-Genisysª |
|
|
|
|
|
|
|
|
| GrailEXP |
|
|
|
|
|
|
|
|
|
|
| Biobase |
|
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| HGMD¨
Professional |
|
|
|
|
|
|
|
|
| GenomeTraxª |
|
|
|
|
|
|
|
|
| PROTEOMEª |
|
|
|
|
|
|
|
|
| TRANSFAC¨ / ExPlainª |
|
|
|
|
|
|
|
|
|
| Sequence
Manipulation Suite version 2 (SMS v.2) |
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Format
Conversion |
|
|
|
|
|
|
|
|
| Combine
FASTA |
|
|
|
|
|
|
|
|
| EMBL
to FASTA |
|
|
|
|
|
|
|
|
| EMBL
Feature Extractor |
|
|
|
|
|
|
|
| EMBL
Trans Extractor |
|
|
|
|
|
|
|
|
| Filter
DNA |
|
|
|
|
|
|
|
|
|
| Filter
Protein |
|
|
|
|
|
|
|
|
| GenBank
to FASTA |
|
|
|
|
|
|
|
|
| GenBank
Feature Extractor |
|
|
|
|
|
|
|
| GenBank
Trans Extractor |
|
|
|
|
|
|
|
| One
to Three |
|
|
|
|
|
|
|
|
| Range Extractor DNA |
|
|
|
|
|
|
|
|
| Range Extractor Protein |
|
|
|
|
|
|
|
| Reverse
Complement |
|
|
|
|
|
|
|
|
| Split
Codons |
|
|
|
|
|
|
|
|
| Split
FASTA |
|
|
|
|
|
|
|
|
| Three
to One |
|
|
|
|
|
|
|
|
| Windows Extractor DNA |
|
|
|
|
|
|
|
| Windows Extractor Protein |
|
|
|
|
|
|
|
| Sequence
Analysis |
|
|
|
|
|
|
|
|
| Codon
Plot |
|
|
|
|
|
|
|
|
| Codon
Usage |
|
|
|
|
|
|
|
|
| CpG
Islands |
|
|
|
|
|
|
|
|
| DNA
Molecular Weight |
|
|
|
|
|
|
|
| DNA
Pattern Find |
|
|
|
|
|
|
|
|
| DNA
Stats |
|
|
|
|
|
|
|
|
|
| Fuzzy Search DNA |
|
|
|
|
|
|
|
|
| Fuzzy Search Protein |
|
|
|
|
|
|
|
|
| Ident
and Sim |
|
|
|
|
|
|
|
|
| Multi Rev Trans |
|
|
|
|
|
|
|
|
| Mutate for Digest |
|
|
|
|
|
|
|
|
| ORF
Finder |
|
|
|
|
|
|
|
|
| Pairwise Align Colons |
|
|
|
|
|
|
|
|
| Pairwise Align DNA |
|
|
|
|
|
|
|
|
| Pairwise Align Protein |
|
|
|
|
|
|
|
|
| PCR Primer Stats |
|
|
|
|
|
|
|
|
| PCR
Products |
|
|
|
|
|
|
|
|
| Protein
GRAVY |
|
|
|
|
|
|
|
|
| Protein
Isoelectric Point |
|
|
|
|
|
|
|
| Protein
Molecular Weight |
|
|
|
|
|
|
|
| Protein Pattern Find |
|
|
|
|
|
|
|
|
| Protein
Stats |
|
|
|
|
|
|
|
|
| Restriction
Digest |
|
|
|
|
|
|
|
|
| Restriction
Summary |
|
|
|
|
|
|
|
|
| Reverse
Translate |
|
|
|
|
|
|
|
|
| Translate |
|
|
|
|
|
|
|
|
|
| Sequence
Figures |
|
|
|
|
|
|
|
|
| Color Align Conservation |
|
|
|
|
|
|
|
| Color Align Properties |
|
|
|
|
|
|
|
|
| Group
DNA |
|
|
|
|
|
|
|
|
| Group
Protein |
|
|
|
|
|
|
|
|
| Primer
Map |
|
|
|
|
|
|
|
|
| Restriction
Map |
|
|
|
|
|
|
|
|
| Translation
Map |
|
|
|
|
|
|
|
|
| Random
Sequences |
|
|
|
|
|
|
|
|
| Mutate
DNA |
|
|
|
|
|
|
|
|
| Mutate
Protein |
|
|
|
|
|
|
|
|
| Random Coding DNA |
|
|
|
|
|
|
|
|
| Random
DNA Sequences |
|
|
|
|
|
|
|
| Random DNA Regions |
|
|
|
|
|
|
|
|
| Random
Protein Sequences |
|
|
|
|
|
|
|
| Random Protein Regions |
|
|
|
|
|
|
|
| Sample
DNA |
|
|
|
|
|
|
|
|
| Sample
Protein |
|
|
|
|
|
|
|
|
| Shuffle
DNA |
|
|
|
|
|
|
|
|
| Shuflle Protein |
|
|
|
|
|
|
|
|
| Miscellaneous |
|
|
|
|
|
|
|
|
| IUPAC
codes |
|
|
|
|
|
|
|
|
| Genetic
codes |
|
|
|
|
|
|
|
|
| Browser
compatibility |
|
|
|
|
|
|
|
|
|
| Animal
Genome Research Web Sites and Databas Resources |
|
|
|
|
| |
|
|
|
|
|
|
|
|
|
| Cattle
(Bos taurus) |
|
|
|
|
|
|
|
|
| NRSP-8 Cattle
Coord. - Texas |
|
|
|
|
|
|
|
| Genome
sequencing - Baylor |
|
|
|
|
|
|
|
| NCBI
Cattle Resources |
|
|
|
|
|
|
|
|
| Ensembl cattle
genome |
|
|
|
|
|
|
|
| UCSC
Cattle Genome Browser |
|
|
|
|
|
|
|
| UMD Assembly |
|
|
|
|
|
|
|
|
| USDA-MARC
Cattle Map |
|
|
|
|
|
|
|
| Arkdb:
Cattle - Roslin, UK |
|
|
|
|
|
|
|
| Bovine Genome Database
(TXAM) |
|
|
|
|
|
|
|
| Ruminant Genome Biology
Consortium |
|
|
|
|
|
|
| COMRAD Cattle RH Map |
|
|
|
|
|
|
|
| Cattle Genomics
- UIUC |
|
|
|
|
|
|
|
| INRA
Bovine map - France |
|
|
|
|
|
|
|
| Cattle GDB - Australia |
|
|
|
|
|
|
|
|
| Cattle
SNP/Genome (CSIRO) |
|
|
|
|
|
|
|
| Dairy
Cattle QTL database |
|
|
|
|
|
|
|
| Texas A&M QTL Viewer |
|
|
|
|
|
|
|
|
| Iowa
Stata U. CattleQTLdb |
|
|
|
|
|
|
|
| Cattle
chromosome maps - Japan |
|
|
|
|
|
|
|
| Gene Indices (GtGI) |
|
|
|
|
|
|
|
|
| Wageningen Cattle
db |
|
|
|
|
|
|
|
|
| microRNA
genes |
|
|
|
|
|
|
|
|
| Ortholog genes DB |
|
|
|
|
|
|
|
|
| Pigs
(Sus scrofa) |
|
|
|
|
|
|
|
|
| NRSP-8 Pig Coord. -
Iowa |
|
|
|
|
|
|
|
| Genome
sequencing - Sanger |
|
|
|
|
|
|
|
| Genome at
Pre-Ensembl |
|
|
|
|
|
|
|
| NCBI
Pig Resources |
|
|
|
|
|
|
|
|
| USDA-MARC
Pig Map |
|
|
|
|
|
|
|
|
| Arkdb:
Pig - Roslin, UK |
|
|
|
|
|
|
|
|
| ISU Pig
QTLdb |
|
|
|
|
|
|
|
|
| Pig
Genomics - UIUC |
|
|
|
|
|
|
|
|
| Pig
Cytogenetic map - France |
|
|
|
|
|
|
|
| PiGenome database - Korea |
|
|
|
|
|
|
|
| Pig
chromosome maps - Japan |
|
|
|
|
|
|
|
| RH
Map: INRA, France |
|
|
|
|
|
|
|
|
| RH Map: Reno, UNR |
|
|
|
|
|
|
|
|
| RH Map: UIUC |
|
|
|
|
|
|
|
|
| Sino-Danmark Sequencing
Project |
|
|
|
|
|
|
|
| Pig
genome blast - NCBI |
|
|
|
|
|
|
|
| Gene Indices (SsGI) |
|
|
|
|
|
|
|
|
| PiGenome DB (Korea) |
|
|
|
|
|
|
|
|
| Wageningen Pigs db |
|
|
|
|
|
|
|
|
| Chicken
(Gallus gallus) |
|
|
|
|
|
|
|
|
| NRSP-8: Chicken -
Michigan |
|
|
|
|
|
|
|
| Genome sequencing - WUSTL |
|
|
|
|
|
|
|
| NCBI
Chicken Resources |
|
|
|
|
|
|
|
| NIH Chicken Resources |
|
|
|
|
|
|
|
| Ensembl chicken
genome |
|
|
|
|
|
|
|
| UCSC
Chicken Genome Browser |
|
|
|
|
|
|
|
| ChickNet - Roslin, UK |
|
|
|
|
|
|
|
|
| ISU
Chicken QTLdb |
|
|
|
|
|
|
|
|
| Chicken -
Wageningen, NL |
|
|
|
|
|
|
|
| GMod
Tracks - U.Del |
|
|
|
|
|
|
|
|
| ChickEST - Manchester,
UK |
|
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| ChickEST - U. of
Delaware |
|
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| Birdbase - U. of Delaware |
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| Birdbase - U. of
Arizona |
|
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| Gallus Wiki - U. of
Delaware |
|
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| Chicken RH Map -
INRA |
|
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| GEISHA proj - U. of
Arizona |
|
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| GallusReactome |
|
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| Gene Indices (GgGI) |
|
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| Wageningen Chicken
db |
|
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| microRNA
genes |
|
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| Ortholog genes DB |
|
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|
| Sheep
(Ovis aries) |
|
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|
|
| Internat'l Sheep Genome
Consortium |
|
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|
|
| USDA-MARC
Sheep Map |
|
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|
| NCBI
Sheep Resources |
|
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|
| UK
Sheep Map - Roslin, UK |
|
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| Arkdb:
Sheep - Roslin, UK |
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| Sheep
- Melbourne, AU |
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| Sheep
BACend seq (CSIRO) |
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| Sheep -
Japan |
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| Goat
(Carpa Hircus) |
|
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| Goat - INRA, France |
|
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|
| NCBI Goat Resource |
|
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| Horse
(Equus caballus) |
|
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|
| NRSP-8 Horse Coord. -
Kentucky |
|
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|
| NCBI Horse Genome |
|
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|
|
| NCBI
Horse Resources |
|
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|
| Horse
Transcriptome - Geogia |
|
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|
| Horse Genetics,
UC-Davis |
|
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| Arkdb:
Horse - Roslin, UK |
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| Horse - INRA, France |
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| Horse
chromosome map - Japan |
|
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| Buffalo |
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| BuffaloGenome.ORG |
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| Water Buffalo Genome (India) |
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| Buffalo Genome Resource (NCBI) |
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| Buffalo genome db (France) |
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| Turkey |
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| Arkdb: Turkey - Roslin, UK |
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| Turkey
genome - Minnesota |
|
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|
| NCBI Tuekey Resources |
|
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| Camel |
|
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| Arabian
Camel Genome |
|
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| Rabbit |
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|
| Rabbit Genome - INRA, France |
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|
| NCBI Rabbit Resources |
|
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| Cat |
|
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|
| Cat Genome, Roslin, UK |
|
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|
| NCBI Cat Resources |
|
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| Dog |
|
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|
| Dog -
NCBI |
|
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|
| DogMap Callaboration |
|
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|
| Dog -
UC-Berkerley |
|
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| Dog - Univ. of
Berne |
|
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| Dog - FHCRC |
|
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|
| Dog Gene Indices (DogGI) |
|
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|
| Dog - RH Project |
|
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| Aquaculture |
|
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| NRSP-8
AquaGenomics |
|
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|
| Catfish - Auburn, Alabama |
|
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|
|
| CatfishGenome.ORG
(Auburn) |
|
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|
| Catfish Gene Indices (CfGI) |
|
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|
| FishBase - Japan |
|
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|
| Fugu Genomics Project -
UK |
|
|
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|
|
| Fugu genome -
Ensembl |
|
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|
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|
| KillifishGene Indices (FhGI) |
|
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|
| Marine Genomics - MUSC |
|
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|
| Medaka Genome - Japan |
|
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|
| Oyster
Genome Mapping - Rutgers |
|
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|
| Pufferfish
Genome - France |
|
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|
| Rainbow Trout, INRA, France |
|
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|
| Shrimp Map - CSIRO, Australia |
|
|
|
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|
|
| Shrimp EST - Brasil |
|
|
|
|
|
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|
|
| Shrimp
Genetics 101 |
|
|
|
|
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|
|
| Salmon Gene Indices (AsGI) |
|
|
|
|
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|
|
| Tetraodon
Genome - Ensembl |
|
|
|
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|
|
| Tilapia Genome - Univ.
Maryland |
|
|
|
|
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|
|
| Tilapia
Genome Proj - Univ. of NH |
|
|
|
|
|
|
|
| Trout Gene Indices (RtGI) |
|
|
|
|
|
|
|
| ZebrafishGene Indices (ZGI) |
|
|
|
|
|
|
|
| Zebrafish
( ZFIN | Ensembl | NCBI ) |
|
|
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|
|
| Mouse |
|
|
|
|
|
|
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|
|
| Mouse
- Jackson Lab |
|
|
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|
|
| Mouse
- NCBI |
|
|
|
|
|
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|
|
| Mouse genome - NCBI |
|
|
|
|
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|
|
| Mouse - Ensembl |
|
|
|
|
|
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|
|
| Mouse Gene Indices (MGI) |
|
|
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|
|
| Mouse Gene Family - Japan |
|
|
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|
| Rat |
|
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|
|
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|
| Rat -
NCBI |
|
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|
| Rat -
Ensembl |
|
|
|
|
|
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|
|
| Rat - Medical College of
Wisc. |
|
|
|
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|
|
| Rat Gene Indices (RGI) |
|
|
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|
| Fly |
|
|
|
|
|
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|
|
| Fly Genetics:
Harvard |
|
|
|
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|
| Fly Genetics: Indiana |
|
|
|
|
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|
|
|
| Drosophila - Berkeley |
|
|
|
|
|
|
|
|
| Drosophila Gene Indices |
|
|
|
|
|
|
|
| Honey Bee
genome |
|
|
|
|
|
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|
|
| Human |
|
|
|
|
|
|
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|
|
| Projects:
NIH |
|
|
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|
|
| Projects: DOE |
|
|
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|
|
| Projects: UK |
|
|
|
|
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|
|
| Maps: RH map |
|
|
|
|
|
|
|
|
| Maps: 99 map |
|
|
|
|
|
|
|
|
| Maps: Launchpad |
|
|
|
|
|
|
|
|
| Genes: Gene Indices (HsGI) |
|
|
|
|
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|
|
| Phenotypes:
Associatn db | |
|
|
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|
|
|
|
| Genome: Ensembl |
|
|
|
|
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|
|
| Genome:
Pharm |
|
|
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|
| Genome: GDB |
|
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|
| NCBI |
|
|
|
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|
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| |
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|
|
| Databases |
|
|
|
|
|
|
|
|
|
| NCBI C++
Toolkit Manual |
|
|
|
|
|
|
|
| NCBI Website Search |
|
|
|
|
|
|
|
|
| Downloads |
|
|
|
|
|
|
|
|
| BLAST (Stand-alone) |
|
|
|
|
|
|
|
|
| FTP: BLAST Databases |
|
|
|
|
|
|
|
|
| FTP: CDD |
|
|
|
|
|
|
|
|
|
| FTP: FASTA BLAST
Databases |
|
|
|
|
|
|
|
| FTP:
GenBank |
|
|
|
|
|
|
|
|
| FTP: GenPept |
|
|
|
|
|
|
|
|
| FTP: Gene |
|
|
|
|
|
|
|
|
|
| FTP: Gene Expression Omnibus
(GEO) Profiles and Datasets |
|
|
|
|
|
| FTP: Genome |
|
|
|
|
|
|
|
|
| FTP: Genome Mapping
Data |
|
|
|
|
|
|
|
| FTP: Genome
Markers (UniSTS) |
|
|
|
|
|
|
|
| FTP:
HomoloGene |
|
|
|
|
|
|
|
|
| FTP: NCBI Taxonomy |
|
|
|
|
|
|
|
|
| FTP: PubChem |
|
|
|
|
|
|
|
|
| FTP: RefSeq |
|
|
|
|
|
|
|
|
| FTP: SKY/M-Fish and CGH Data |
|
|
|
|
|
|
|
| FTP: SNP |
|
|
|
|
|
|
|
|
|
| FTP: Sequence Read Archive (SRA) Download Facility |
|
|
|
|
|
| FTP: Site |
|
|
|
|
|
|
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|
|
| FTP: Structure (MMDB) |
|
|
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|
|
| FTP: Trace Archive |
|
|
|
|
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|
|
| FTP: UniGene |
|
|
|
|
|
|
|
|
| FTP: UniVec |
|
|
|
|
|
|
|
|
| FTP: Whole Genome
Shotgun Sequences |
|
|
|
|
|
|
| FTP: dbGAP Open-Access Data |
|
|
|
|
|
|
|
| FTP: dbMHC Data |
|
|
|
|
|
|
|
|
| NCBI Data
Specifications |
|
|
|
|
|
|
|
| National Library of Medicine
(NLM) DTDs |
|
|
|
|
|
|
| PubChem
Download Service |
|
|
|
|
|
|
|
| RSS Feeds |
|
|
|
|
|
|
|
|
|
| Submissions |
|
|
|
|
|
|
|
|
| BioProject
Submission |
|
|
|
|
|
|
|
| GenBank:
BankIt |
|
|
|
|
|
|
|
|
| GenBank: Barcode |
|
|
|
|
|
|
|
|
| GenBank:
Sequin |
|
|
|
|
|
|
|
|
| GenBank:
tbl2asn |
|
|
|
|
|
|
|
|
| Gene Expression Omnibus (GEO) Web Deposit |
|
|
|
|
|
|
| PubChem
Deposition Gateway |
|
|
|
|
|
|
|
| SNP
Submission Tool |
|
|
|
|
|
|
|
|
| Submission Portal |
|
|
|
|
|
|
|
|
| Trace Archive Submission |
|
|
|
|
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|
|
| Tools |
|
|
|
|
|
|
|
|
|
| ASN.1
Format Summary |
|
|
|
|
|
|
|
| BLAST Microbial Genomes |
|
|
|
|
|
|
|
| BLAST RefSeqGene |
|
|
|
|
|
|
|
|
| BLAST RefSeqGene |
|
|
|
|
|
|
|
|
| Batch
Entrez |
|
|
|
|
|
|
|
|
| CDTree |
|
|
|
|
|
|
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|
|
| COBALT |
|
|
|
|
|
|
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|
|
| Cn3D |
|
|
|
|
|
|
|
|
|
| Concise
Microbial Protein BLAST |
|
|
|
|
|
|
|
| Conserved
Domain Search Service (CD Search) |
|
|
|
|
|
|
| E-Utilities |
|
|
|
|
|
|
|
|
|
| Frequency-weighted
Link (FLink) |
|
|
|
|
|
|
|
| Gene
Expression Omnibus (GEO) BLAST |
|
|
|
|
|
|
| Genome
BLAST |
|
|
|
|
|
|
|
|
| Genome
ProtMap |
|
|
|
|
|
|
|
|
| Genome
Remapping Service |
|
|
|
|
|
|
|
| Genome
Workbench |
|
|
|
|
|
|
|
|
| NCBI
Toolbox |
|
|
|
|
|
|
|
|
| OSIRIS |
|
|
|
|
|
|
|
|
|
| Open
Mass Spectrometry Search Algorithm (OMSSA) Search |
|
|
|
|
| Open
Reading Frame Finder (ORF Finder) |
|
|
|
|
|
|
| Primer-BLAST |
|
|
|
|
|
|
|
|
| ProSplign |
|
|
|
|
|
|
|
|
|
| PubChem
Power User Gateway (PUG) |
|
|
|
|
|
|
| PubChem Standardization Service |
|
|
|
|
|
|
|
| PubChem
Structure Search |
|
|
|
|
|
|
|
| SNP
Database Specialized Search Tools |
|
|
|
|
|
|
| Sequence
Viewer |
|
|
|
|
|
|
|
|
| Splign |
|
|
|
|
|
|
|
|
|
| Variation
Reporter |
|
|
|
|
|
|
|
|
| VecScreen |
|
|
|
|
|
|
|
|
|
| Vector
Alignment Search Tool (VAST) |
|
|
|
|
|
|
|
| Human
and other Vertebrate Genomes |
|
|
|
|
|
|
| |
|
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|
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|
|
| Model
organisms, comparative genomics |
|
|
|
|
|
|
| ABA -
Ascidian Body Atlas |
|
|
|
|
|
|
|
| ACeDB |
|
|
|
|
|
|
|
|
|
| AgBase |
|
|
|
|
|
|
|
|
|
| Animal Genome Size
Database |
|
|
|
|
|
|
|
| AnimalQTLdb |
|
|
|
|
|
|
|
|
| ArkDB |
|
|
|
|
|
|
|
|
|
| BodyMap-Xs |
|
|
|
|
|
|
|
|
| BodyMap |
|
|
|
|
|
|
|
|
|
| Bovine Genome |
|
|
|
|
|
|
|
|
| cBARBEL |
|
|
|
|
|
|
|
|
|
| CCDS |
|
|
|
|
|
|
|
|
|
| ChickVD |
|
|
|
|
|
|
|
|
|
| CleanEST |
|
|
|
|
|
|
|
|
|
| COG - Eukaryotic
Orthologous Groups of proteins |
|
|
|
|
|
| CORG |
|
|
|
|
|
|
|
|
|
| Cre Transgenic Database |
|
|
|
|
|
|
|
| DBTGR |
|
|
|
|
|
|
|
|
|
| diArk |
|
|
|
|
|
|
|
|
|
| Edinburgh
Mouse (EMAP) Atlas |
|
|
|
|
|
|
|
| EGO |
|
|
|
|
|
|
|
|
|
| EMMA |
|
|
|
|
|
|
|
|
|
| Ensembl |
|
|
|
|
|
|
|
|
|
| Ensembl Genomes |
|
|
|
|
|
|
|
|
| Entrez
Gene |
|
|
|
|
|
|
|
|
| euGenes |
|
|
|
|
|
|
|
|
|
| EuroPhenome |
|
|
|
|
|
|
|
|
| EVOG |
|
|
|
|
|
|
|
|
|
| ExDom |
|
|
|
|
|
|
|
|
|
| FREP |
|
|
|
|
|
|
|
|
|
| GALA |
|
|
|
|
|
|
|
|
|
| Gallus Gbrowse |
|
|
|
|
|
|
|
|
| GEISHA |
|
|
|
|
|
|
|
|
|
| GeneNest |
|
|
|
|
|
|
|
|
|
| GeneSpeed |
|
|
|
|
|
|
|
|
| GXD |
|
|
|
|
|
|
|
|
|
| HomoloGene |
|
|
|
|
|
|
|
|
| Homophila |
|
|
|
|
|
|
|
|
| IKMC |
|
|
|
|
|
|
|
|
|
| MamPol |
|
|
|
|
|
|
|
|
|
| MFunGD |
|
|
|
|
|
|
|
|
|
| MGD |
|
|
|
|
|
|
|
|
|
| Mouse Phenome Database |
|
|
|
|
|
|
|
| Mouse SAGE |
|
|
|
|
|
|
|
|
| Mouse
Transposon Insertion Database |
|
|
|
|
|
|
| Mouse Tumor Biology
Database |
|
|
|
|
|
|
|
| MUGEN Mouse
Database |
|
|
|
|
|
|
|
| Narcisse |
|
|
|
|
|
|
|
|
|
| Newt-omics |
|
|
|
|
|
|
|
|
| Non-Human Genome
Segmental Duplication Database |
|
|
|
|
|
| OGEE |
|
|
|
|
|
|
|
|
|
| OMIA |
|
|
|
|
|
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|
|
| OPTIC |
|
|
|
|
|
|
|
|
|
| OrthoDB |
|
|
|
|
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|
|
| PathBase |
|
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|
| PBmice |
|
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|
| PEDE |
|
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|
| PhylomeDB |
|
|
|
|
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|
|
| PhyloPat |
|
|
|
|
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|
|
| PigGIS |
|
|
|
|
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|
|
| Pseudofam |
|
|
|
|
|
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|
|
| Rat Genome Database |
|
|
|
|
|
|
|
|
| RatMap |
|
|
|
|
|
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|
| RIKEN mammals |
|
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|
| RTCGD |
|
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|
| SNPSTR |
|
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|
| SpBase |
|
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| SPEED |
|
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| TAED |
|
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| TreeFam |
|
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| UniTrap |
|
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| UTGB/medaka |
|
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| VEGA |
|
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| X:MAP |
|
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|
| XenBase |
|
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| Xpro |
|
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|
| ZFIN |
|
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|
| zfishbook |
|
|
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|
|
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|
|
| Human
genome databases, maps and viewers |
|
|
|
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|
|
| Cancer Chromosomes |
|
|
|
|
|
|
|
|
| ENCODE Project at UCSC |
|
|
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|
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|
|
| Ensembl |
|
|
|
|
|
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|
|
| GeneAnnot |
|
|
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|
|
| GeneCards |
|
|
|
|
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|
|
| GeneLoc |
|
|
|
|
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|
|
| HOWDY |
|
|
|
|
|
|
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|
|
| Human
BAC Ends Database |
|
|
|
|
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|
|
| IXDB |
|
|
|
|
|
|
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|
|
| QTL
Matchmaker |
|
|
|
|
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|
|
| The Chromosome 7 Annotation
Project |
|
|
|
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|
|
| TIARA |
|
|
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|
|
|
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|
|
| TRBase |
|
|
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|
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|
|
| UCSC Genome Browser |
|
|
|
|
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|
|
| UniSTS |
|
|
|
|
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|
|
| X:MAP |
|
|
|
|
|
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|
|
| Human
ORFs |
|
|
|
|
|
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|
|
| ASDB -
Alternative Splicing Database |
|
|
|
|
|
|
| CCDS |
|
|
|
|
|
|
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|
|
| ENCODE Project at UCSC |
|
|
|
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|
|
| EROP-Moscow |
|
|
|
|
|
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|
|
| Evola |
|
|
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|
|
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|
|
| FANTOM |
|
|
|
|
|
|
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|
|
| FLJ-DB |
|
|
|
|
|
|
|
|
|
| GeneAnnot |
|
|
|
|
|
|
|
|
| GeneSpeed |
|
|
|
|
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|
|
| H-InvDB |
|
|
|
|
|
|
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|
|
| HGPD |
|
|
|
|
|
|
|
|
|
| Hoppsigen |
|
|
|
|
|
|
|
|
|
| HPRD - Human Protein Reference
Database |
|
|
|
|
|
|
| HS3D -
Homo Sapiens Splice Sites Dataset |
|
|
|
|
|
|
| HUGE - Human
Unidentified Gene-Encoded large proteins |
|
|
|
|
|
| Human Proteinpedia |
|
|
|
|
|
|
|
|
| IPI - International Protein
Index |
|
|
|
|
|
|
|
| LIFEdb |
|
|
|
|
|
|
|
|
|
| Mammalian Gene Collection |
|
|
|
|
|
|
|
| NetAffx |
|
|
|
|
|
|
|
|
|
| ORFDB |
|
|
|
|
|
|
|
|
|
| PlasmID |
|
|
|
|
|
|
|
|
|
| PReMod |
|
|
|
|
|
|
|
|
|
| SYSTERS |
|
|
|
|
|
|
|
|
|
| The Gene Indices |
|
|
|
|
|
|
|
|
| trome, trEST and trGEN |
|
|
|
|
|
|
|
| UniGene |
|
|
|
|
|
|
|
|
|
| VEGA |
|
|
|
|
|
|
|
|
|
| Human
Genes and Diseases |
|
|
|
|
|
|
|
| Protein Mutant Database |
|
|
|
|
|
|
|
| CancerResource |
|
|
|
|
|
|
|
|
| General
human genetics databases |
|
|
|
|
|
|
| BodyParts3D |
|
|
|
|
|
|
|
|
| Comparative Toxicogenomics
Database |
|
|
|
|
|
|
| dbCRID |
|
|
|
|
|
|
|
|
|
| dbSNP-Q |
|
|
|
|
|
|
|
|
|
| DG-CST |
|
|
|
|
|
|
|
|
|
| GenAtlas |
|
|
|
|
|
|
|
|
|
| Gene
Wiki |
|
|
|
|
|
|
|
|
|
| GeneCards |
|
|
|
|
|
|
|
|
|
| Genetics Home Reference |
|
|
|
|
|
|
|
| HAGR - Human Ageing
Genomic Resources |
|
|
|
|
|
|
| HCAD - Human
Chromosome Aberration Database |
|
|
|
|
|
| HERVd - Human Endogenous
Retrovirus database |
|
|
|
|
|
| HGNC Database |
|
|
|
|
|
|
|
|
| Human PAML Browser |
|
|
|
|
|
|
|
|
| MSY Breakpoint
Mapper |
|
|
|
|
|
|
|
| MutDB |
|
|
|
|
|
|
|
|
|
| NCBI
Epigenomics |
|
|
|
|
|
|
|
|
| OMIM
- Online Mendelian Inheritance in Man |
|
|
|
|
|
|
| SNP2NMD |
|
|
|
|
|
|
|
|
|
| General
polymorphism databases |
|
|
|
|
|
|
|
| ALFRED |
|
|
|
|
|
|
|
|
|
| Allele Frequency
Net |
|
|
|
|
|
|
|
|
| CTGA |
|
|
|
|
|
|
|
|
|
| Cypriot national
mutation database |
|
|
|
|
|
|
| D-HaploDB |
|
|
|
|
|
|
|
|
| Database of
Genomic Variants |
|
|
|
|
|
|
|
| Database of Genomic
Variants archive (DGVa) |
|
|
|
|
|
|
| dbDNV |
|
|
|
|
|
|
|
|
|
| dbQSNP |
|
|
|
|
|
|
|
|
|
| dbRIP |
|
|
|
|
|
|
|
|
|
| dbSNP |
|
|
|
|
|
|
|
|
|
| F-SNP |
|
|
|
|
|
|
|
|
|
| FINDbase |
|
|
|
|
|
|
|
|
|
| HaploReg |
|
|
|
|
|
|
|
|
|
| HapMap Project |
|
|
|
|
|
|
|
|
| HGVbaseG2P |
|
|
|
|
|
|
|
|
| HGVS Databases |
|
|
|
|
|
|
|
|
| HuRef |
|
|
|
|
|
|
|
|
|
| HvrBase++ |
|
|
|
|
|
|
|
|
|
| IGDD |
|
|
|
|
|
|
|
|
|
| IPD - Immuno Polymorphism
Database |
|
|
|
|
|
|
| JSNP |
|
|
|
|
|
|
|
|
|
| MouseIndelDB |
|
|
|
|
|
|
|
|
| OMIM
- Online Mendelian Inheritance in Man |
|
|
|
|
|
|
| PharmGKB |
|
|
|
|
|
|
|
|
| Patrocles |
|
|
|
|
|
|
|
|
|
| PharmGKB |
|
|
|
|
|
|
|
|
| PhenomicDB |
|
|
|
|
|
|
|
|
| PolyDoms |
|
|
|
|
|
|
|
|
|
| Polymorphix |
|
|
|
|
|
|
|
|
| rSNP
Guide |
|
|
|
|
|
|
|
|
| SNAP |
|
|
|
|
|
|
|
|
|
| SNP2NMD |
|
|
|
|
|
|
|
|
|
| SNP@Ethnos |
|
|
|
|
|
|
|
|
| SNPedia |
|
|
|
|
|
|
|
|
|
| SNPeffect |
|
|
|
|
|
|
|
|
|
| SNPlogic |
|
|
|
|
|
|
|
|
|
| TopoSNP |
|
|
|
|
|
|
|
|
|
| TPMD |
|
|
|
|
|
|
|
|
|
| VarySysDB |
|
|
|
|
|
|
|
|
|
| VnD |
|
|
|
|
|
|
|
|
|
| YH database |
|
|
|
|
|
|
|
|
| Cancer
gene databases |
|
|
|
|
|
|
|
| Atlas of Genetics
and Cytogenetics in Oncology and Haematology |
|
|
|
|
| Cancer Chromosomes |
|
|
|
|
|
|
|
|
| CancerGenes |
|
|
|
|
|
|
|
|
| CanGEM |
|
|
|
|
|
|
|
|
|
| canSAR |
|
|
|
|
|
|
|
|
|
| CaSNP |
|
|
|
|
|
|
|
|
|
| CCDB |
|
|
|
|
|
|
|
|
|
| CGED |
|
|
|
|
|
|
|
|
|
| ChimerDB |
|
|
|
|
|
|
|
|
|
| COLT-Cancer |
|
|
|
|
|
|
|
|
| COSMIC -
Catalogue Of Somatic Mutations In Cancer |
|
|
|
|
|
| CTDatabase |
|
|
|
|
|
|
|
|
| Database
of Germline p53 Mutations |
|
|
|
|
|
|
| dbDEPC |
|
|
|
|
|
|
|
|
|
| DDOC |
|
|
|
|
|
|
|
|
|
| DDPC |
|
|
|
|
|
|
|
|
|
| EHCO |
|
|
|
|
|
|
|
|
|
| HLungDB |
|
|
|
|
|
|
|
|
|
| HPTAA |
|
|
|
|
|
|
|
|
|
| Human p53,
human hprt, rodent lacI and rodent lacZ databases |
|
|
|
|
| IARC TP53 Database |
|
|
|
|
|
|
|
|
| IGDB.NSCLC |
|
|
|
|
|
|
|
|
| ITTACA |
|
|
|
|
|
|
|
|
|
| MethyCancer |
|
|
|
|
|
|
|
|
| MoKCa |
|
|
|
|
|
|
|
|
|
| Mouse Tumor Biology
Database |
|
|
|
|
|
|
|
| Network of Cancer
Genes |
|
|
|
|
|
|
|
| OncoDB.HCC |
|
|
|
|
|
|
|
|
| Pancreas
Expression |
|
|
|
|
|
|
|
|
| PubMeth |
|
|
|
|
|
|
|
|
|
| RTCGD - Retroviral Tagged
Cancer Gene Database |
|
|
|
|
|
| SNP500Cancer |
|
|
|
|
|
|
|
|
| Stem Cell
Discovery Engine |
|
|
|
|
|
|
|
| SV40 Large
T-Antigen Mutant Database |
|
|
|
|
|
|
| Tumor
Associated Gene database |
|
|
|
|
|
|
|
| Tumor Gene Family
Databases (TGDBs) |
|
|
|
|
|
|
| UCSC Cancer
Genomics Browser |
|
|
|
|
|
|
|
| UMD-BRCA1/BRCA2 databases |
|
|
|
|
|
|
|
| Gene-,
system- or disease-specific databases |
|
|
|
|
|
|
| ADHDgene |
|
|
|
|
|
|
|
|
|
| ALPSbase |
|
|
|
|
|
|
|
|
|
| AlzGene |
|
|
|
|
|
|
|
|
|
| Androgen Receptor
Gene Mutations Database |
|
|
|
|
|
|
| Atlas of Genetics
and Cytogenetics in Oncology and Haematology |
|
|
|
|
| AutDB |
|
|
|
|
|
|
|
|
|
| AutismKB |
|
|
|
|
|
|
|
|
|
| Autophagy
Database |
|
|
|
|
|
|
|
|
| Beta Cell Genomics |
|
|
|
|
|
|
|
|
| BGED - Brain
Gene Expression Database |
|
|
|
|
|
|
| BGMUT |
|
|
|
|
|
|
|
|
|
| BTKbase |
|
|
|
|
|
|
|
|
|
| CADgene |
|
|
|
|
|
|
|
|
|
| CarpeDB |
|
|
|
|
|
|
|
|
|
| CASRDB |
|
|
|
|
|
|
|
|
|
| Collagen
Mutation Database |
|
|
|
|
|
|
|
| Cytokine Gene
Polymorphisms |
|
|
|
|
|
|
|
| dbLEP |
|
|
|
|
|
|
|
|
|
| Disease Ontology |
|
|
|
|
|
|
|
|
| DiseaseMeth |
|
|
|
|
|
|
|
|
| DistiLD |
|
|
|
|
|
|
|
|
|
| DNAreplication.net |
|
|
|
|
|
|
|
|
| DR.VIS |
|
|
|
|
|
|
|
|
|
| EICO DB -
Expression-based Imprint Candidate Organiser |
|
|
|
|
|
| EndoNet |
|
|
|
|
|
|
|
|
|
| EpoDB -
Erythropoiesis Database |
|
|
|
|
|
|
|
| ERGDB
- Estrogen Responsive Genes Database |
|
|
|
|
|
|
| ERGR |
|
|
|
|
|
|
|
|
|
| EyeSite |
|
|
|
|
|
|
|
|
|
| FUNPEP |
|
|
|
|
|
|
|
|
|
| G2Cdb |
|
|
|
|
|
|
|
|
|
| GOLD.db - Genomics Of
Lipid-associated Disorders |
|
|
|
|
|
| GWASdb |
|
|
|
|
|
|
|
|
|
| HaemB |
|
|
|
|
|
|
|
|
|
| HbVar |
|
|
|
|
|
|
|
|
|
| HDBase |
|
|
|
|
|
|
|
|
|
| HemBase |
|
|
|
|
|
|
|
|
|
| HemoPDB
- Hematopoietic Promoter Database |
|
|
|
|
|
| HORDE - Human
Olfactory Receptor Data Exploratorium |
|
|
|
|
|
| HOX-PRO |
|
|
|
|
|
|
|
|
|
| HPMR - Human Plasma
Membrane Receptome |
|
|
|
|
|
|
| HRTBLDb |
|
|
|
|
|
|
|
|
|
| Human PAX6 Allelic Variant
Database |
|
|
|
|
|
|
| IL2Rgbase |
|
|
|
|
|
|
|
|
|
| Imprinted Gene Catalogue |
|
|
|
|
|
|
|
| INFEVERS |
|
|
|
|
|
|
|
|
|
| Interferome |
|
|
|
|
|
|
|
|
| InterFil |
|
|
|
|
|
|
|
|
|
| KBERG |
|
|
|
|
|
|
|
|
|
| KinMutBase |
|
|
|
|
|
|
|
|
| Locus-specific
variation database |
|
|
|
|
|
|
|
| Lowe Syndrome
Mutation Database |
|
|
|
|
|
|
| MDPD |
|
|
|
|
|
|
|
|
|
| NCL Resource |
|
|
|
|
|
|
|
|
| NEIBank |
|
|
|
|
|
|
|
|
|
| PAHdb |
|
|
|
|
|
|
|
|
|
| PGDB |
|
|
|
|
|
|
|
|
|
| PHEXdb |
|
|
|
|
|
|
|
|
|
| Prostate Expression Database |
|
|
|
|
|
|
|
| PTCH1 Mutation Database |
|
|
|
|
|
|
|
| RAPID |
|
|
|
|
|
|
|
|
|
| RB1 Gene Mutation
Database |
|
|
|
|
|
|
|
| SCAdb |
|
|
|
|
|
|
|
|
|
| SelTarbase |
|
|
|
|
|
|
|
|
|
| SpliceDisease |
|
|
|
|
|
|
|
|
| SynDB |
|
|
|
|
|
|
|
|
|
| T1DBase - Type 1 Diabetes
Database |
|
|
|
|
|
|
| The Autism Chromosome
Rearrangement Database |
|
|
|
|
|
| The Lafora Database |
|
|
|
|
|
|
|
|
